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(license license:asl2.0))) +(define-public python-liana-py + (package + (name "python-liana-py") + (version "0.1.9") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/saezlab/liana-py") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "00lqrmi38wmdpjlcafgmrnkwsbp0yvm2rya6qs8y6jfizww9ff8i")))) + (build-system pyproject-build-system) + (arguments + (list #:test-flags '(list "-k" + ;; These tests require internet access. + (string-append "not test_generate_lr_resource" + " and not test_generate_nondefault_lr_resource")) + #:phases '(modify-phases %standard-phases + (add-before 'check 'set-home + ;; Some tests require home directory to be set. + (lambda _ + (setenv "HOME" "/tmp"))) + ;; Numba needs a writable directory to cache functions. + (add-before 'build 'set-numba-cache-dir + (lambda _ + (setenv "NUMBA_CACHE_DIR" "/tmp")))))) + (propagated-inputs (list python-anndata + python-black + python-cell2cell + python-decoupler-py + python-hypothesis + python-ipykernel + python-ipython + python-mofax + python-mudata + python-nbconvert + python-nbsphinx + python-numpydoc + python-omnipath + python-pandas + python-plotnine + python-pypandoc + python-scipy + python-requests + python-scanpy + python-statsmodels + python-tqdm + tzdata)) + (native-inputs (list python-pytest python-pytest-cov python-numpy)) + (home-page "https://github.com/saezlab/liana-py") + (synopsis "LIANA is a ligand-receptor analysis framework") + (description "This is a Ligand-Receptor inference framework. +The framework enables the use of any LR method +with any resources.") + (license license:gpl3+))) + (define-public python-logomaker (package (name "python-logomaker") base-commit: 445a0359083388b5ee686e6e855f94a3aac5f79c -- 2.34.1