all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
blob f6f6099e42d40c697441e69a82016eca500ea20c 21520 bytes (raw)
name: gnu/packages/jsoftware.scm 	 # note: path name is non-authoritative(*)

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
 
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2021 B. Wilson <elaexuotee@wilsonb.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages jsoftware)
  #:use-module (guix records)
  #:use-module (guix packages)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix git-download)
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system trivial)
  #:use-module (guix build utils)
  #:use-module (guix utils)
  #:use-module (gnu packages)
  #:use-module (gnu packages libedit)
  #:use-module (gnu packages llvm)
  #:use-module (gnu packages maths)
  #:use-module (guix gexp)
  #:use-module (ice-9 match))


(define (jname prefix jtype)
  "Return a package name for the given prefix and jtype, e.g. `jlib',
  `jlib-beta', `j', and `j-beta'."
  (let ((postfix (if (eq? jtype 'release) ""
                   (string-append "-" (symbol->string jtype)))))
    (string-append prefix postfix)))

(define (jversion->string version revision)
  "Return a string representation of a J version and (optional) revision pair."
  (let ((postfix (if (not revision) ""
                   (string-append "-" revision))))
    (string-append version postfix)))

(define (jinfo->git-tag jversion jtype jrevision)
  "Given version parameters, construct a git tag for upstream releases."
  (let ((postfix (if (not jrevision) ""
                   (string-append "-" jrevision))))
    (string-append "j" jversion "-" (symbol->string jtype) postfix)))

(define-record-type* <jlib-build-configuration>
  jlib-build-configuration make-jlib-build-configuration
  jlib-build-configuration?
  (builder      jlib-build-configuration-builder (default "guix.gnu.org"))
  (version      jlib-build-configuration-version (default #f))
  (revision     jlib-build-configuration-revision (default #f))
  (hash         jlib-build-configuration-hash (default #f))
  (type         jlib-build-configuration-type (default 'release))
  (patches      jlib-build-configuration-patches (default '()))
  (extra-inputs jlib-build-configuration-extra-inputs (default '()))
  (extra-envars jlib-build-configuration-extra-envars (default '())))

(define make-jlib
  (match-lambda
    (($ <jlib-build-configuration>
        builder jversion revision hash type patches extra-inputs extra-envars)
     (package
       (name (jname "jlib" type))
       (version (jversion->string jversion revision))
       (source
        (origin
          (method git-fetch)
          (uri (git-reference
                (url "https://github.com/jsoftware/jsource")
                (commit (jinfo->git-tag jversion type revision))))
          (sha256 (base32 hash))
          (file-name (git-file-name name version))
          (patches patches)))
       (properties `((jversion . ,jversion)
                     (jrevision . ,revision)
                     (jtype . ,type)))
       (build-system gnu-build-system)
       (native-inputs `(("clang-toolchain" ,clang-toolchain)))
       (inputs (cons* `("libedit" ,libedit)
                      `("libomp" ,libomp)
                      extra-inputs))
       (arguments
        `(#:modules (((ice-9 ftw) #:select (scandir))
                     ((ice-9 popen) #:select (open-pipe* close-pipe))
                     ((ice-9 regex) #:select (match:substring string-match))
                     ((ice-9 threads) #:select (parallel par-for-each))
                     ((srfi srfi-26) #:select (cut))
                     ((srfi srfi-1) #:select (fold))
                     ,@%gnu-build-system-modules)
          #:phases
          ;; Upstream's build system consists of ad-hoc scripts that build
          ;; build up (very complicated) environment variables to pass to make.
          ;; The basic build process looks like this:
          ;;
          ;;   1) Copy jsrc/jversion-x.h to jsrc/jversion.h and edit values;
          ;;   2) Set jplatform and j64x environment variables;
          ;;   3) Run make2/build_jconsole.sh and make2/build_libj.sh;
          ;;
          ;; However, upstream expects users to run J directly from the source
          ;; directory; they do not supply a make `install' target.  Thus it
          ;; takes some massaging to install files in FHS-style directories.
          (modify-phases %standard-phases
            ;; In particular, we have to set up
            ;;
            ;;   1) jsrc/jversion.h as in a typical build;
            ;;   2) jlibrary/bin/profilex.ijs to point to writable directories;
            ;;   3) make2/build_*.sh to respect standard build conventions;
            ;;   4) jsrc/jconsole.c to fix libedit dlopen; and
            ;;   5) Hard coded references to addons directory.
            (replace 'configure
              (lambda* (#:key target inputs outputs #:allow-other-keys)
                (let* ((clang-toolchain (assoc-ref inputs "clang-toolchain"))
                       (clang (string-append clang-toolchain "/bin/clang"))
                       (libedit (assoc-ref inputs "libedit"))
                       (out (assoc-ref outputs "out"))
                       (share (string-append out "/share/j")))
                  ;; Set up build constants
                  (copy-file "jsrc/jversion-x.h" "jsrc/jversion.h")
                  (substitute* "jsrc/jversion.h"
                    (("^#define jversion.*$")
                     (format #f "#define jversion ~s\n" ,version))
                    (("^#define jtype.*$")
                     (format #f "#define jtype ~s\n" (symbol->string ',type)))
                    (("^#define jbuilder.*$")
                     (format #f "#define jbuilder ~s\n" ,builder)))
                  ;; Create profilex.ijs overrides to point to the correct
                  ;; store items.  Note that we set ~install and ~addons
                  ;; directories to reside under ~user to allow installing
                  ;; and loading addons.  TODO: Guix-ify J addons as well.
                  (call-with-output-file "jlibrary/bin/profilex.ijs"
                    (lambda (port)
                      (display
                        (string-join
                          (list
                            (format #f "system=. '~a/system'" share)
                            (format #f "tools=. '~a/tools'" share)
                            ;; Upstream defaults to spamming $HOME with
                            ;; unhidden userdata directories.  Set this to be
                            ;; $HOME/.j/<jtype>/<jversion> instead
                            "'jtype jversion'=. (3&{,{.) <;._2 ,&'/' 9!:14''"
                            "jversion=. ({.~ i.&'-') jversion"
                            "jsuffix=. >@{&('';'-beta') jtype -: 'beta'"
                            "user=. home,'/.j/',jversion,jsuffix"
                            "addons=. user,'/addons'"
                            "break=. user,'/break'"
                            "config=. user,'/config'"
                            "install=. user,'/install'"
                            "snap=. user,'/snap'"
                            "temp=. user,'/temp'"
                            "\n")
                          "\n")
                        port)))
                  ;; Munge the build scripts into reason:
                  ;; 1. Short-circuit the fragile compiler detection;
                  ;; 2. Make sure to include our CFLAGS and LFLAGS; and
                  ;; 3. Propagate script errors to top level.
                  (for-each
                   (lambda (file)
                     (with-directory-excursion "make2"
                       (substitute* file
                         ;; The `compiler' variable doesn't point to the actual
                         ;; compiler.  It is just a switch to tell the build
                         ;; scripts whether to use gcc- or clang-specific
                         ;; flags.
                         (("^compiler=.*$") "compiler=clang\n")
                         (("^LDFLAGS=\"" def) (string-append def "$LDFLAGS "))
                         (("^(common=\")(\\$USETHREAD.*)$" _ def rest)
                          (string-append def "$CFLAGS " rest))
                         (("^#!.*" shebang)
                          (string-append shebang "set -o errexit\n")))))
                     '("build_jconsole.sh" "build_libj.sh"))
                  ;; The jconsole manually loads libedit with dlopen.  The path
                  ;; must be absolute to correctly point to our input.
                  (substitute* "jsrc/jconsole.c"
                    (("libedit\\.so\\.[0-9]" so-file)
                     (format #f "~a/lib/~a" libedit so-file)))
                  ;; The ~addons/dev directory supplies tentative J-script
                  ;; definitions of new J engine functionality.  Since we point
                  ;; ~addons under the ~user directory, we move it under
                  ;; ~system instead, which sits as-is in the output.
                  (with-directory-excursion "jsrc"
                    (for-each
                      (lambda (file)
                        (substitute* file (("~addons/dev") "~system/dev")))
                      (scandir "."
                        (lambda (f) (eq? (stat:type (stat f)) 'regular)))))
                  ;; Implementation of 9!:14 records build time which breaks
                  ;; build reproducibility.  Note that upstream code depends on
                  ;; the exact format of these strings, so we need to mimic the
                  ;; standard.
                  (substitute* "jsrc/j.c"
                    (("__DATE__") "\"Jan 01 1970\"")
                    (("__TIME__") "\"00:00:00\""))
                  ;; Upstream recommends using clang, with GCC support being
                  ;; second-class, often resulting in build failures.
                  (setenv "CC" clang))))
            ;; The build output depends primarily on the values of the
            ;; `jplatform' and `j64x' environment variables.  If the target is
            ;; ARM, then `jplatform' is "raspberry", otherwise it is `linux'.
            ;; In addition to 32- and 64- bit versions, `j64x' controlls
            ;; whether AVX or AVX2 variants of libj are built.
            ;;
            ;; However, build targets are not fine-grained enough to
            ;; distinguish between CPU features.  Thus we build and install all
            ;; variants of libj, expecting jconsole to be called with a wrapper
            ;; script that detects AVX features and loads the appropriate libj
            ;; at runtime.
            (replace 'build
              (lambda _
                (setenv "USE_OPENMP" "1")
                (setenv "USE_THREAD" "1")
                (for-each (lambda (var-val) (apply setenv var-val))
                          (quote ,extra-envars))
                ;; The build scripts assume that PWD is make2.
                (with-directory-excursion "make2"
                  (let* ((platform ,(if (target-arm?) "raspberry" "linux"))
                         (jplat (string-append "jplatform=" platform))
                         (target-bit ,(if (target-64bit?) "64" "32"))
                         (jbit (string-append "j64x=" "j" target-bit))
                         (jbit-avx (string-append jbit "avx"))
                         (jbit-avx2 (string-append jbit "avx2")))
                    (parallel
                      ;; Since jconsole doesn't depend on AVX features, we just
                      ;; build it once.
                      (invoke "env" jplat jbit "./build_jconsole.sh")
                      (invoke "env" jplat jbit "./build_libj.sh")
                      (if ,(target-64bit?)
                        (parallel
                          (invoke "env" jplat jbit-avx "./build_libj.sh")
                          (invoke "env" jplat jbit-avx2
                                  "./build_libj.sh"))))))))
            ;; The test suite is expected to be run as follows for each variant
            ;; of libj that we build:
            ;;
            ;;     $ echo 'RUN ddall' | jconsole test/tsu.ijs
            ;;
            ;; This requires a working jconsole with accessible jlibrary files.
            ;; We simply place these all under test/bin.
            (replace 'check
               (lambda _
                 (let ((jplatform ,(if (target-arm?) "raspberry" "linux")))
                   (mkdir-p "test/bin")
                   (for-each
                     (lambda (dir)
                       (let ((source (string-append "jlibrary/" dir))
                             (dest (string-append "test/bin/" dir)))
                       (begin
                         (mkdir-p dest)
                         (copy-recursively source dest))))
                     '("system" "tools" "addons"))
                   ;; The jlibrary/dev directory only sometimes exists, but
                   ;; needs to be copied into the ~system directory when it
                   ;; does.
                   (if (access? "jlibrary/dev" R_OK)
                     (copy-recursively "jlibrary/dev" "test/bin/system/dev"))
                   (par-for-each
                     (lambda (dir)
                       (let* ((jbin (string-append "bin/" jplatform))
                              (jbit ,(if (target-64bit?) "j64" "j32"))
                              (jconsole (string-append jbin "/" jbit
                                                       "/jconsole"))
                              (source (string-append jbin "/" dir))
                              (dest (string-append "test/bin/" dir)))
                         (begin
                           (mkdir-p dest)
                           (copy-recursively source dest)
                           (install-file "jlibrary/bin/profile.ijs" dest)
                           (install-file jconsole dest)
                           (let* ((jc (string-append dest "/jconsole"))
                                  (tests "test/tsu.ijs")
                                  (port (open-pipe* OPEN_WRITE jc tests)))
                             (display "RUN ddall\n" port)
                             (when (not (zero? (status:exit-val
                                                 (close-pipe port))))
                               (error "Some J build tests failed."))))))
                     (scandir (string-append "bin/" jplatform)
                              (negate (cut member <> '("." "..")))))
                   #t)))
            ;; Now that everything is built, installation is fairly
            ;; straightforward, following FHS conventions.  The only quirk is
            ;; that we install jconsole under /libexec to make room for the
            ;; wrapper replacement under /bin.
            (replace 'install
              (lambda* (#:key outputs inputs #:allow-other-keys)
                (let* ((jplat ,(if (target-arm?) "raspberry" "linux"))
                       (jbit ,(if (target-64bit?) "j64" "j32"))
                       (jconsole (string-join
                                   `("bin" ,jplat ,jbit "jconsole") "/"))
                       (out (assoc-ref outputs "out"))
                       (etc (string-append out "/etc/j"))
                       (lib (string-append out "/lib/j"))
                       (libexec (string-append out "/libexec"))
                       (share (string-append out "/share/j"))
                       (system (string-append share "/system"))
                       (dev (string-append system "/dev")))
                  (mkdir-p lib)
                  (for-each
                    (lambda (jarch)
                      (let* ((jbin (string-join `("bin" ,jplat ,jarch) "/"))
                             (javx-match (string-match "avx.*" jarch))
                             (javx (if (not javx-match) ""
                                     (match:substring javx-match)))
                             (sep (if javx-match "-" ""))
                             (source (string-append jbin "/libj.so"))
                             (dest (format #f "~a/libj~a~a.so" lib sep javx)))
                        (copy-file source dest)))
                    (scandir (string-append "bin/" jplat)
                             (negate (cut member <> '("." "..")))))
                  (install-file jconsole libexec)
                  (copy-recursively "jlibrary/system" system)
                  (if (access? "jlibrary/dev" R_OK)
                    (copy-recursively "jlibrary/dev" dev))
                  (install-file "jlibrary/bin/profile.ijs" etc)
                  (install-file "jlibrary/bin/profilex.ijs" etc)))))))
       (home-page "https://www.jsoftware.com/")
       (synopsis "Ascii-only, array programming language in the APL family")
       (description
     "J is a high-level, general-purpose programming language that is
particularly suited to the mathematical, statistical, and logical analysis of
data. It is a powerful tool for developing algorithms and exploring problems
that are not already well understood.")
       (license license:gpl3+)))))


(define jlib-901
  (make-jlib
    (jlib-build-configuration
      (version "901")
      (revision "f")
      (hash "1776021m0j1aanzwg60by83n53pw7i6afd5wplfzczwk8bywax4p")
      (patches (search-patches "jsoftware-j901-f-fixes.patch")))))


(define jlib-build-configuration-with-sleef
  (jlib-build-configuration
    (extra-inputs `(("sleef" ,sleef)))
    (extra-envars `(("USE_SLEEF_SRC" "0")
                    ("LDFLAGS" "-lsleef")))))

(define jlib-902
  (make-jlib
    (jlib-build-configuration
      (inherit jlib-build-configuration-with-sleef)
      (version "902")
      (revision "b")
      (hash "0j67vgikqflwjqacsdicasvyv1k54s2c8vjgwmf0ix7l41p4xqz0"))))

(define jlib-903-beta
  (make-jlib
    (jlib-build-configuration
      (inherit jlib-build-configuration-with-sleef)
      (version "903")
      (revision "h")
      (type 'beta)
      (hash "13sw2ffgx6pm699qfi50drlp8y1vmzj4swzx82g6vhyjpjci1w4h"))))


(define (make-ijconsole jlib)
  "Generate a G-exp wrapper script that detects AVX/AVX2 support at runtime and
  executes jconsole with the appropriate libj.so and profile.ijs."
  (program-file (string-append "ijconsole-" (package-version jlib))
    #~(begin
        (use-modules ((ice-9 rdelim) #:select (read-line))
                     ((ice-9 regex) #:select (regexp-match? string-match)))

        (define (cpu-feature-line? string)
          (string-prefix? "flags" string))

        (define (contains-word? word string)
          (regexp-match?
            (string-match (string-join `("\\<" ,word "\\>") "")
                          string)))

        (define (has-cpu-feature? feature)
          (with-input-from-file "/proc/cpuinfo"
             (lambda ()
               (catch 'found
                 (lambda ()
                   (let loop ((line (read-line)))
                     (cond ((eof-object? line) #f)
                           ((and (cpu-feature-line? line)
                                 (contains-word? feature line))
                            (throw 'found))
                           (else (loop (read-line))))))
                 (const #t)))))

        (let* ((jconsole (string-append #$jlib "/libexec/jconsole"))
               (libj (format #f "~a/lib/j/libj-~a.so" #$jlib
                             (cond ((has-cpu-feature? "avx2") "avx2")
                                   ((has-cpu-feature? "avx") "avx")
                                   (else ""))))
               (jprofile (string-append #$jlib "/etc/j/profile.ijs")))
          (apply execl jconsole "ijconsole" "-lib" libj "-jprofile" jprofile
                 (cdr (command-line)))))))

(define (make-j jlib)
  "Generate a J package containing /bin/ijconsole-<jversion> linked against the
  given jlib library package.  Note that the ijconsole executable is versioned
  since it is typical for J users to have multiple versions installed on the
  same system."
  (let ((jversion (assq-ref (package-properties jlib) 'jversion))
        (jtype (assq-ref (package-properties jlib) 'jtype)))
    (package (inherit jlib)
      (name (jname "j" jtype))
      (source #f)
      (inputs `(("jlib" ,jlib)
                ("ijconsole" ,(make-ijconsole jlib))))
      (build-system trivial-build-system)
      (arguments
       `(#:modules ((guix build utils))
         #:builder
         (begin
           (use-modules (guix build utils))
           (let* ((ijconsole (assoc-ref %build-inputs "ijconsole"))
                  (out (assoc-ref %outputs "out"))
                  (bin (string-append out "/bin")))
             (mkdir-p bin)
             (symlink ijconsole
                      (string-append bin "/ijconsole-" ,jversion)))))))))

(define-public j-901 (make-j jlib-901))
(define-public j-902 (make-j jlib-902))
(define-public j-903-beta (make-j jlib-903-beta))

debug log:

solving f6f6099e42 ...
found f6f6099e42 in https://yhetil.org/guix/3LOAUDT0FLL4U.2SOD925YP915T@wilsonb.com/

applying [1/1] https://yhetil.org/guix/3LOAUDT0FLL4U.2SOD925YP915T@wilsonb.com/
diff --git a/gnu/packages/jsoftware.scm b/gnu/packages/jsoftware.scm
new file mode 100644
index 0000000000..f6f6099e42

Checking patch gnu/packages/jsoftware.scm...
Applied patch gnu/packages/jsoftware.scm cleanly.

index at:
100644 f6f6099e42d40c697441e69a82016eca500ea20c	gnu/packages/jsoftware.scm

(*) Git path names are given by the tree(s) the blob belongs to.
    Blobs themselves have no identifier aside from the hash of its contents.^

Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.