From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1.migadu.com ([2001:41d0:303:e224::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms1.migadu.com with LMTPS id cGLcN97RK2Y8PwAA62LTzQ:P1 (envelope-from ) for ; Fri, 26 Apr 2024 18:10:07 +0200 Received: from aspmx1.migadu.com ([2001:41d0:303:e224::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1.migadu.com with LMTPS id cGLcN97RK2Y8PwAA62LTzQ (envelope-from ) for ; Fri, 26 Apr 2024 18:10:06 +0200 X-Envelope-To: larch@yhetil.org Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=nK8LVAKS; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Seal: i=1; s=key1; d=yhetil.org; t=1714147806; a=rsa-sha256; cv=none; b=MCrQ2Xcajxc6x1k1vUcoigT0Mhf1IpVcxdeA6DV52i9DZwTaOP55BdXk2vq2t0Ql9KuC80 h/+hp2Cd9sEUrKshuC403hqaLZCPKWxytvCcC9roVAWKeVexKfBwVML5OI1FlXXoY6Tw67 KPXHklPUmJvsH/ZfY2f87zEgT/u2ZPBeVl/uhScR8Uhdfj1Wt0R20vaxi3gMJbz0F5mMkg +bPbju9WBLlDqlfd9ZDqhGUP/G5FC5tXP7QChrcyB8MzuHQQwB2b0wMxqsa0+W8lIExX5H wIy0mD5UOsIruydAUlZ5ITvWGBbwau6aLarJ7tS/hgIAGaGaUCVSDHQc/mndTg== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=nK8LVAKS; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1714147806; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:list-id:list-help: list-unsubscribe:list-subscribe:list-post:dkim-signature; bh=d6jeTnj+R/6LXzAOmoi00rutygxwDEsCOs9GDiJmHfk=; b=curQxgTlWGNTcy9v8xyrhigEkcmCs/QdBiGKio7m1lAr5ByhG8LSUXdwDWvtyZK4aVIus/ O1qMX0GtExFOd/j58xN1JzKhfczLj/DoAeoxeE4sRLVxArVwA28NfVwCreph9EQfPY7OAO 1UnRwtB/JB77Wl9NX3bkf4HG/VIQrc960wqMRim7thxBzzXjJUkYYau0Px6iG32wFl+v4i GE5PQrPJ2Jktr0vA6gO6l4V1wA+mpMmmsV//XMzMH+ddoK42UGlfFtU8nDxUiB4tLstjB0 G2m1CNuAWTgSp17o2Bc8CoNxsLpHTuBz162bqIjWXHGqk9WZCCWo9exXzGYmcQ== Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id C5AF634CD5 for ; Fri, 26 Apr 2024 18:10:06 +0200 (CEST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1s0O91-0000I9-9T; Fri, 26 Apr 2024 12:09:51 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1s0O8x-0000Hr-IL for guix-patches@gnu.org; Fri, 26 Apr 2024 12:09:47 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1s0O8x-0003Du-7R for guix-patches@gnu.org; Fri, 26 Apr 2024 12:09:47 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1s0O9F-00083U-Df for guix-patches@gnu.org; Fri, 26 Apr 2024 12:10:05 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#70595] [PATCH] gnu: Add python-pyahocorasick. Resent-From: nafkhamdc Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 26 Apr 2024 16:10:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 70595 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 70595@debbugs.gnu.org Cc: nafkhamdc X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.171414779930893 (code B ref -1); Fri, 26 Apr 2024 16:10:05 +0000 Received: (at submit) by debbugs.gnu.org; 26 Apr 2024 16:09:59 +0000 Received: from localhost ([127.0.0.1]:38261 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s0O99-00082D-1O for submit@debbugs.gnu.org; Fri, 26 Apr 2024 12:09:59 -0400 Received: from lists.gnu.org ([2001:470:142::17]:36348) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s0O96-00081G-9b for submit@debbugs.gnu.org; Fri, 26 Apr 2024 12:09:57 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1s0O8e-0000Ff-Qg for guix-patches@gnu.org; Fri, 26 Apr 2024 12:09:30 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1s0O8b-0003Ai-DH for guix-patches@gnu.org; Fri, 26 Apr 2024 12:09:28 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1714147752; x=1715962153; bh=7M8bd+yW8cntPgk HwiloZSXIdMkpd14mld/3Q4NHGA8=; b=nK8LVAKSP3shzZ/CFmgR9yeow2mpyfC wRgjhwEgCedXNC/sq4nOJvULrphBVDW0WVQQls1jJGbD+pDh1T6tfqyON9+fq+oZ ej7z+RauGGHBErc8k8JExHOI9gPRCaLQNvsnP4AxnkslTzSkO9IMTc8VzHj7P2w+ ANnLsHRpGn3s= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id A82D730044C for ; Fri, 26 Apr 2024 18:09:12 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Fri, 26 Apr 2024 18:09:12 +0200 From: nafkhamdc Date: Fri, 26 Apr 2024 16:08:12 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28346.000 X-TM-AS-Result: No-10--5.157600-5.000000 X-TMASE-MatchedRID: n8dyCgqCzutYhP20o6vOMFY9XYa1m8xAJ3y+iqiko29rIVA3IGfCC6DE DQa+uiKUQpP6/vBOuJPABo6AR1sb2oqKGmXzWdcHju2XlcEx9HRR3UkpERYmZGkcgSWdFe6f//X ooDAENi9x/PQ8RbmEmSPm0XhuHgZh3nPCNtVaqRjlSuHlq6Rvf6CfX1AcCU7M6eOTk8IYERCvKD X50Hs6PObIo6/v7awTyrzRjZhtElOvngkjHjojpBTT3CijgvDY28gAxP/Ts6L1VGQ8lr6yrg9dk +6tnSFLX4OlTtVi7Dr3ZSz2FRccuTxB4qAbAXZo7OqOsfUdfsQ= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.157600-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28346.000 X-TM-SNTS-SMTP: A82D30FB3F2D87B5716DBF5F64F11188258CE08634771EDB67689B95CC96A1302000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Queue-Id: C5AF634CD5 X-Migadu-Scanner: mx12.migadu.com X-Migadu-Spam-Score: 3.71 X-Spam-Score: 3.71 X-TUID: ODVLyPm53ci5 * gnu/packages/bioinformatics.scm (python-pyahocorasick): New variable. Change-Id: I468bed450351b49cf81344a328841cd77f67cb4e --- gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa6bce5591..287dad4326 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6383,6 +6383,29 @@ (define-public python-pyani average nucleotide identity.") (license license:expat))) +(define-public python-pyahocorasick + (package + (name "python-pyahocorasick") + (version "2.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/WojciechMula/pyahocorasick") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1fsnivwcw56q7lwz41c5kbfvxv0v17mmkx43i2a293l49fxj08j8")))) + (build-system pyproject-build-system) + (native-inputs (list python-pytest python-twine python-wheel)) + (home-page "https://github.com/WojciechMula/pyahocorasick") + (synopsis "Library for finding multiple key strings in text") + (description + "Pyahocorasick is a fast, memory-efficient library for multi-pattern string search. +This means that you can find multiple key strings occurrences +at once in some input text.") + (license license:bsd-3))) + (define-public exonerate (package (name "exonerate") base-commit: 9593750698394b6fecd73e7fca00409ea1ffa2e3 -- 2.34.1