From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:bcc0::]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id mn2yOTrUeWBNKwAAgWs5BA (envelope-from ) for ; Fri, 16 Apr 2021 20:15:22 +0200 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id eOXXMzrUeWB/MAAAB5/wlQ (envelope-from ) for ; Fri, 16 Apr 2021 18:15:22 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 9D6301E141 for ; Fri, 16 Apr 2021 20:15:22 +0200 (CEST) Received: from localhost ([::1]:59186 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXSzx-00029H-LR for larch@yhetil.org; Fri, 16 Apr 2021 14:15:21 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:39142) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lXSzh-00027c-2u for guix-patches@gnu.org; Fri, 16 Apr 2021 14:15:07 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:58331) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lXSze-0002li-Os for guix-patches@gnu.org; Fri, 16 Apr 2021 14:15:04 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lXSze-0004fS-K4 for guix-patches@gnu.org; Fri, 16 Apr 2021 14:15:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#47826] [PATCH] gnu: Update blast+ to 2.11.0. Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 16 Apr 2021 18:15:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47826 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Leo Famulari Cc: 47826@debbugs.gnu.org Received: via spool by 47826-submit@debbugs.gnu.org id=B47826.161859688617899 (code B ref 47826); Fri, 16 Apr 2021 18:15:02 +0000 Received: (at 47826) by debbugs.gnu.org; 16 Apr 2021 18:14:46 +0000 Received: from localhost ([127.0.0.1]:41643 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXSzK-0004eX-Br for submit@debbugs.gnu.org; Fri, 16 Apr 2021 14:14:46 -0400 Received: from eggs.gnu.org ([209.51.188.92]:54706) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lXSzE-0004eC-FM for 47826@debbugs.gnu.org; Fri, 16 Apr 2021 14:14:40 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:45853) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXSz9-0002WI-4t; Fri, 16 Apr 2021 14:14:31 -0400 Received: from 2001-1c02-0b18-2900-222e-248e-9586-e52d.cable.dynamic.v6.ziggo.nl ([2001:1c02:b18:2900:222e:248e:9586:e52d]:52704) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1lXSz7-0006jB-RV; Fri, 16 Apr 2021 14:14:30 -0400 Message-ID: From: Roel Janssen Date: Fri, 16 Apr 2021 20:14:27 +0200 In-Reply-To: References: Content-Type: text/plain; charset="UTF-8" User-Agent: Evolution 3.38.4 (3.38.4-1.fc33) MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1618596922; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post; bh=SXXEc7l+Zvhg0Z2kyeYxwyPtgZN8y/VIW0RKtddpzas=; b=fjdKcIiZR/m2n1zlHW8ULI+e/UTQVf8vvTYxVS/V71BH7qc/R1VVxLuuWsU5ClFa0zeHw+ LDhp1uRLMc6ccxgikuIxijgSEMl0wZZE4rkkm42lkjYB16flfl1OcwqoRvYSIgjJbuC6Rx bFTSJxa2NgwN3nQN3UXD98L6/dsu67YDbNpPWho12u+zt8EKwQJSTsAORzvE/uZpFtGG5k OpKG2OS/2ENZk+CuVZnz+KxnjOZofLbFjjTtKipz9CD35ZDC4gRX1Yk/MV+j52qW75AOwD To2J0IL7Tf66Yjc6/h2vrO42w4PI9urMWvjjAhZs6reLt2zgSZFAsi3BpmDySQ== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1618596922; a=rsa-sha256; cv=none; b=Bosol6xdNXp8IrcUh/ACxG5mvnMX+lglC/6phk/e5M68Z5yd/XMW5Fk75PQhV5JRSe3qCv bEIV1ed35D5eBvj1OacqPA1FX93eUmTDUerARUmFJkRWVu0xxvo/ddPZsbeF84r7u9BmKJ A49mcusib1zQXCaou00sN+/6YbAePnClCAhtBIfyH6/EIY/JQgfzj/GVGNUMzSyawi+ngD eqSMCpJVrU3P5lI8uIUmtSOtCpyI1YG1bWUl/mkD4HGROOVjEiQ06+EITFPgz8I20JQ6s9 eQpNz76VSM7XJ7F9gTRbhwDEzmUAEDIhqqxamukyIUnU4VjzJIbewUlwtzlOJg== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=none; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: -2.94 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 9D6301E141 X-Spam-Score: -2.94 X-Migadu-Scanner: scn0.migadu.com X-TUID: YaamRyzfLDiW Hi Leo, On Fri, 2021-04-16 at 12:37 -0400, Leo Famulari wrote: > On Fri, Apr 16, 2021 at 01:22:59PM +0200, Roel Janssen wrote: > > Hi Guix, > > > > Here's a patch to update blast+ to 2.11.0. > > > > Kind regards, > > Roel Janssen > > > > > From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00 > > 2001 > > From: Roel Janssen > > Date: Fri, 16 Apr 2021 13:20:53 +0200 > > Subject: [PATCH] gnu: Update blast+ to 2.11.0. > > > > * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0. > > LGTM, assuming the packages the depend on it still build. > Let's see if I got this right: $ ./pre-inst-env guix refresh --list-dependent blast+ /home/roel/Programming/guix/gnu/packages/bioinformatics.go Building the following 2 packages would ensure 2 dependent packages are rebuilt: roary@3.12.0 proteinortho@6.0.14 So I built roary and proteinortho with the blast+ patch applied, and both build fine. Can I conclude from this that packages depending on blast+ still build fine? Kind regards, Roel Janssen