From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <66921@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#66921] [PATCH 5/5] gnu: Add r-screpertoire.
Date: Fri, 3 Nov 2023 17:30:04 +0100 [thread overview]
Message-ID: <d9923f797e2b8e0a387633afdab92f319c39ba2b.1699029004.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <295ae4566681826b406dea240db641124f1d60a0.1699029004.git.madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-screpertoire): New variable.
Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15
---
gnu/packages/bioconductor.scm | 43 +++++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b683868df5..8306b703de 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10014,6 +10014,49 @@ (define-public r-scmap
different experiment.")
(license license:gpl3)))
+(define-public r-screpertoire
+ (package
+ (name "r-screpertoire")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scRepertoire" version))
+ (sha256
+ (base32 "1wgs8dv5zl82iciy86w5ws1gq8v2piklcifbw7gmbw60kijyr2l1"))))
+ (properties `((upstream-name . "scRepertoire")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-doparallel
+ r-dplyr
+ r-ggalluvial
+ r-ggplot2
+ r-ggraph
+ r-igraph
+ r-plyr
+ r-powertcr
+ r-reshape2
+ r-rlang
+ r-seuratobject
+ r-singlecellexperiment
+ r-stringdist
+ r-stringr
+ r-summarizedexperiment
+ r-tidygraph
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/scRepertoire")
+ (synopsis "Toolkit for single-cell immune receptor profiling")
+ (description
+ "The scRepertoire package was built to process data derived from the 10x
+Genomics Chromium Immune Profiling for both @acronym{TCR, T-cell receptor} and
+@acronym{Ig, immunoglobulin} enrichment workflows and subsequently interacts with
+the popular Seurat and SingleCellExperiment R packages. It also allows for
+general analysis of single-cell clonotype information without the use of
+expression information. The package functions as a wrapper for Startrac and
+powerTCR R packages.")
+ (license license:gpl2)))
+
(define-public r-scry
(package
(name "r-scry")
--
2.41.0
next prev parent reply other threads:[~2023-11-03 16:32 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-11-03 16:27 [bug#66921] [patch] Add r-screpertoire, r-powertcr, r-evmix, r-truncdist and r-evd Mădălin Ionel Patrașcu
2023-11-03 16:30 ` [bug#66921] [PATCH 1/5] gnu: Add r-evd Mădălin Ionel Patrașcu
2023-11-03 16:30 ` [bug#66921] [PATCH 2/5] gnu: Add r-truncdist Mădălin Ionel Patrașcu
2023-11-03 16:30 ` [bug#66921] [PATCH 3/5] gnu: Add r-evmix Mădălin Ionel Patrașcu
2023-11-03 16:30 ` [bug#66921] [PATCH 4/5] gnu: Add r-powertcr Mădălin Ionel Patrașcu
2023-11-03 16:30 ` Mădălin Ionel Patrașcu [this message]
2023-11-04 22:14 ` bug#66921: [PATCH 1/5] gnu: Add r-evd Ricardo Wurmus
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