From mboxrd@z Thu Jan 1 00:00:00 1970 From: Arun Isaac Subject: bug#39204: r-rgdal: Reading of vector GIS data causes segfault Date: Sun, 23 Feb 2020 01:12:17 +0530 Message-ID: References: <20200120154302.ijni47ou4fk4wd77@wzguix> Mime-Version: 1.0 Content-Type: multipart/signed; boundary="==-=-="; micalg=pgp-sha256; protocol="application/pgp-signature" Return-path: Received: from eggs.gnu.org ([2001:470:142:3::10]:54568) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1j5ag3-0004US-UO for bug-guix@gnu.org; Sat, 22 Feb 2020 14:43:04 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1j5ag2-0003t6-SF for bug-guix@gnu.org; Sat, 22 Feb 2020 14:43:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:44042) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1j5ag1-0003sP-Ud for bug-guix@gnu.org; Sat, 22 Feb 2020 14:43:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1j5ag1-0007FM-Td for bug-guix@gnu.org; Sat, 22 Feb 2020 14:43:01 -0500 Sender: "Debbugs-submit" Resent-Message-ID: In-Reply-To: List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+gcggb-bug-guix=m.gmane-mx.org@gnu.org Sender: "bug-Guix" To: zimoun Cc: 39204@debbugs.gnu.org --==-=-= Content-Type: multipart/mixed; boundary="=-=-=" --=-=-= Content-Type: text/plain Let's try to debug the problem you are facing. After applying the attached patch, please provide the complete outputs of the following commands. If the output is too long, feel free to send it as an email attachment. $ ./pre-inst-env guix build r-gdal $ ./pre-inst-env guix environment --container --ad-hoc r r-rgdal -- Rscript -e 'library(rgdal); dsn <- system.file("vectors", package = "rgdal")[1]; ogrInfo(dsn=dsn, layer="cities")' Thank you for your patience! Cheers! :-) --=-=-= Content-Type: text/x-patch; charset=utf-8 Content-Disposition: inline; filename=0001-gnu-r-rgdal-Replace-proj.4-with-proj.patch Content-Transfer-Encoding: quoted-printable From=207b2430788c2d168bd2a8a848e488a0e03140057b Mon Sep 17 00:00:00 2001 From: Arun Isaac Date: Sun, 23 Feb 2020 00:46:32 +0530 Subject: [PATCH] gnu: r-rgdal: Replace proj.4 with proj. * gnu/packages/cran.scm (r-rgdal)[inputs]: Replace proj.4 with proj. =2D-- gnu/packages/cran.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b731ddc29e..05759459af 100644 =2D-- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -18,6 +18,7 @@ ;;; Copyright =C2=A9 2018, 2019 Brett Gilio ;;; Copyright =C2=A9 2019 Nicol=C3=B2 Balzarotti ;;; Copyright =C2=A9 2019 Wiktor =C5=BBelazny +;;; Copyright =C2=A9 2020 Arun Isaac ;;; ;;; This file is part of GNU Guix. ;;; @@ -15907,7 +15908,7 @@ effect size.") (build-system r-build-system) (inputs `(("gdal" ,gdal) =2D ("proj.4" ,proj.4) + ("proj" ,proj) ("zlib" ,zlib))) (propagated-inputs `(("r-sp" ,r-sp))) =2D-=20 2.23.0 --=-=-=-- --==-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQEzBAEBCAAdFiEEf3MDQ/Lwnzx3v3nTLiXui2GAK7MFAl5RhBkACgkQLiXui2GA K7NckggAwRAvTsNloPg7aj35kib5+2LVDE1pgSLfB0FbeAuWULJ4mFi1KJWefiuU lj9HzLbdwSmpxGkUYkbnOKogVM6R/1t7//wkemO64w1ZrHcpvmMYXaoz6OEx2wos l+2grsBVhZIRPXMKfhXtQQf2mZ0rEIbJmFtYPmD50sqUsraU1OfQSkPJxsOGni90 8iLvQuLHMENxpue3cqXfw87sA44PuxY4vVJoIgb90gOKugIVyFpoznDJSrfxsAp6 T8CkI7QDT4IASXrVGMoKSfZfrMK05ubWu+RcQgEYtZBAf7UlcfCq7ntN7V8VBJqw 1sb79KyhVGvRIQmrfTfJ99HZiKYbDQ== =DcAf -----END PGP SIGNATURE----- --==-=-=--