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bh=JizUg2PTHzKguqbdRXiFFMylA1YhcnQByy/5VlEDi0Q=; b=AYdeZqF1wCjOz3DD2RZG4QMOfN tQ5W5VT9NwPmeXtIKhUUAiNuyFCwgnj6mH0PgPPdWBDHuDMPWyr3GyhWRA0rmzVbeMx2pfvNihRog etdt8v4LKIg5fZZm8/bD9xMpB1NphaFsC7Zdmwa23LBQR2chp5lT3+/6y3PatE2K5smGYWsTeEZ7E pbTQKtVIdhKdbbNtMvh44YqvAtZYyL33zSOhTFLzFdsDNPmVoRKpehqNZgeQjKMWxwbTB+qXWmOaZ IUArhflLzzO8mQ1DTlZ1B51EohzyfG5hnlUMuT/LeQabkJxxSvt3xcktXeGc7LkNau/d9lSRY1Qus uZaVndTw==; Received: from [192.168.2.1] (port=57298 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1rjk5r-0007VG-0r; Mon, 11 Mar 2024 18:09:47 +0000 From: Arun Isaac Date: Mon, 11 Mar 2024 18:11:18 +0000 Message-ID: X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=139.59.75.54; envelope-from=arunisaac@systemreboot.net; helo=mugam.systemreboot.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US X-Migadu-Spam-Score: -3.88 X-Spam-Score: -3.88 X-Migadu-Queue-Id: EBD653FE41 X-Migadu-Scanner: mx13.migadu.com X-TUID: SdoMuyRZMuNE This patchset adds toil. The linter warns that there is a collision between different versions of python-pyparsing. However, it is not possible to avoid that collision without upgrading python-pyparsing. And, the python-pyparsing upgrade is very complex. It requires rebuilding the world. It also introduces a dependency cycle since the latest version of python-pyparsing switches to the pyproject-build-system. Arun Isaac (7): gnu: Add python-typing-extensions-4.10. gnu: Add python-pypubsub. gnu: Add python-addict. gnu: Add python-prefixed. gnu: Add python-enlighten. gnu: Add python-cwltool. gnu: Add python-toil. gnu/packages/bioinformatics.scm | 74 +++++++++++++++++++++++++++++ gnu/packages/python-build.scm | 13 ++++++ gnu/packages/python-xyz.scm | 83 +++++++++++++++++++++++++++++++++ 3 files changed, 170 insertions(+) base-commit: 001dfb89579856b8695b33b59f484f36e313347f -- 2.41.0