From: vicvbcun <guix@ikherbers.com>
To: 56729@debbugs.gnu.org
Cc: "Ludovic Courtès" <ludo@gnu.org>, "Andreas Enge" <andreas.enge@inria.fr>
Subject: [bug#56729] [RFC PATCH v2 00/29] Add sagemath.
Date: Mon, 8 Aug 2022 17:45:35 +0200 [thread overview]
Message-ID: <cover.1659973115.git.guix@ikherbers.com> (raw)
In-Reply-To: <cover.1658595756.git.guix@ikherbers.com>
Hello guix!
This is a second try, hopefully this time without silly errors.
The packaging of sagemath is for now structured as follows:
- `sagemath-just-build' builds everything using the minimal set of
dependecies to avoid rebuilding where possible. As runtime
dependencies are missing, this is useless on its own.
- `sagemath-with-dependencies' adds all remaining dependencies as
propagated-inputs. This should work, if we set a few additional
environment variables.
- `sagemath-tests' simply runs the tests.
If I interpret the output correctly, these are the tests that are still
failing:
> sage/calculus/calculus.py # 6 doctests failed
> sage/categories/primer.py # 1 doctest failed
> sage/doctest/control.py # 3 doctests failed
> sage/doctest/sources.py # 1 doctest failed
> sage/doctest/test.py # 1 doctest failed
> sage/env.py # 4 doctests failed
> sage/doctest/forker.py # 1 doctest failed
> sage/functions/exp_integral.py # 1 doctest failed
> sage/interfaces/gap_workspace.py # 2 doctests failed
> sage/interfaces/maxima_abstract.py # 2 doctests failed
> sage/interfaces/maxima_lib.py # 2 doctests failed
> sage/lfunctions/sympow.py # 10 doctests failed
> sage/libs/eclib/interface.py # 7 doctests failed
> sage/misc/package_dir.py # 1 doctest failed
> sage/modular/abvar/abvar.py # 1 doctest failed
> sage/modular/hecke/submodule.py # 1 doctest failed
> sage/plot/plot3d/tachyon.py # 2 doctests failed
> sage/repl/display/jsmol_iframe.py # 11 doctests failed
> sage/repl/display/formatter.py # 4 doctests failed
> sage/repl/ipython_kernel/install.py # 1 doctest failed
> sage/repl/ipython_tests.py # 2 doctests failed
> sage/repl/rich_output/backend_ipython.py # 1 doctest failed
> sage/repl/rich_output/output_graphics.py # 25 doctests failed
> sage/repl/rich_output/output_graphics3d.py # 34 doctests failed
> sage/repl/rich_output/output_video.py # 14 doctests failed
> sage/repl/rich_output/backend_doctest.py # 17 doctests failed
> sage/schemes/elliptic_curves/ell_rational_field.py # 14 doctests failed
> sage/symbolic/integration/integral.py # 1 doctest failed
> sage/symbolic/relation.py # 1 doctest failed
> sage/tests/gap_packages.py # 1 doctest failed
> sage/tests/cmdline.py # 14 doctests failed
Some of these seem harmless, others seem more concerning (including
segmentation faults), some due to still missing dependencies.
Some Notes:
- We need to set some environment variables, so that sage can find all
dependencies (see `sagemath-tests'). I suppose we could wrap the
`sage' command, but this would of course add them as dependencies.
- For the `sagemath-data-*' packages, I couldn't find explicit Licenses.
In Sage's COPYING.txt it just says "None (database)" for license.
- How should we handle test failures? Given errors such as the ones
below, it seems delusional to expect every test to succeed.
> Failed example:
> solve_ineq_fourier([x+y<9,x-y>4],[y,x])
> Expected:
> [[y < min(x - 4, -x + 9)]]
> Got:
> [[y < min(-x + 9, x - 4)]]
> Failed example:
> FDS.basename
> Expected:
> 'sage.rings.integer'
> Got:
> '/gnu/store/.../lib/python3.9/site-packages/sage/rings/integer.pyx'
- `python-cython' is build-time dependency but may be needed at runtime.
This could cause issues when cross-compiling, right? I think its path
is only in the wrappers in bin/*.
vicvbcun (29):
gnu: Remove ecl-16.
gnu: edge-addition-planarity-suite: Update to 3.0.2.0.
gnu: gap: Update to 4.11.1.
gnu: cliquer: Update to 1.22.
gnu: lcalc: Update to 2.0.5.
gnu: ntl: Update to 11.5.1.
gnu: eclib: Update to 20220621.
gnu: lrcalc: Update to 2.1.
gnu: maxima: Update to 5.46.0.
gnu: python-sympy: Update to 1.10.1.
gnu: cddlib: Update to 0.94m.
gnu: Add python-memory-allocator.
gnu: Add python-pplpy.
gnu: Add primecount.
gnu: Add python-primecountpy.
gnu: Add python-lrcalc.
gnu: Add palp.
gnu: Add gfan.
gnu: Add flintqs.
gnu: Add tachyon.
gnu: Add sagemath-data-conway-polynomials.
gnu: Add sagemath-data-elliptic-curves.
gnu: Add sagemath-data-combinatorial-designs.
gnu: Add sagemath-data-graphs.
gnu: Add sagemath-data-poytopes-db.
gnu: Add pari-galdata.
gnu: Add sagemath-just-build.
gnu: Add sagemath-with-dependencies.
gnu: Add sagemath-tests.
gnu/local.mk | 9 +-
gnu/packages/algebra.scm | 203 +++--
gnu/packages/graph.scm | 4 +-
gnu/packages/maths.scm | 31 +-
.../ecl-16-format-directive-limit.patch | 83 --
.../ecl-16-ignore-stderr-write-error.patch | 17 -
gnu/packages/patches/ecl-16-libffi.patch | 16 -
.../patches/lcalc-default-parameters-1.patch | 26 -
.../patches/lcalc-default-parameters-2.patch | 58 --
gnu/packages/patches/lcalc-lcommon-h.patch | 13 -
.../patches/lcalc-using-namespace-std.patch | 43 -
gnu/packages/patches/lrcalc-includes.patch | 92 ---
gnu/packages/patches/tachyon-make-arch.patch | 13 +
gnu/packages/python-xyz.scm | 4 +-
gnu/packages/sagemath.scm | 780 ++++++++++++++++--
15 files changed, 833 insertions(+), 559 deletions(-)
delete mode 100644 gnu/packages/patches/ecl-16-format-directive-limit.patch
delete mode 100644 gnu/packages/patches/ecl-16-ignore-stderr-write-error.patch
delete mode 100644 gnu/packages/patches/ecl-16-libffi.patch
delete mode 100644 gnu/packages/patches/lcalc-default-parameters-1.patch
delete mode 100644 gnu/packages/patches/lcalc-default-parameters-2.patch
delete mode 100644 gnu/packages/patches/lcalc-lcommon-h.patch
delete mode 100644 gnu/packages/patches/lcalc-using-namespace-std.patch
delete mode 100644 gnu/packages/patches/lrcalc-includes.patch
create mode 100644 gnu/packages/patches/tachyon-make-arch.patch
base-commit: f6904c0b19c2fcca41bbf1400c738bd833fec9a8
--
2.37.0
next prev parent reply other threads:[~2022-08-08 15:48 UTC|newest]
Thread overview: 90+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-07-23 19:59 [bug#56729] [RFC PATCH 00/10] Add sagemath vicvbcun
2022-07-23 20:51 ` [bug#56729] [RFC PATCH 01/10] gnu: edge-addition-planarity-suite: Update to 3.0.2.0 vicvbcun
2022-07-23 20:51 ` [bug#56729] [RFC PATCH 02/10] gnu: gap: Update to 4.11.1 vicvbcun
2022-08-03 9:25 ` [bug#56729] [RFC PATCH v2] " vicvbcun
2022-07-23 20:51 ` [bug#56729] [RFC PATCH 03/10] gnu: Remove ecl-16 vicvbcun
2022-07-23 20:51 ` [bug#56729] [RFC PATCH 04/10] gnu: cliquer: Update to 1.22 vicvbcun
2022-07-23 20:51 ` [bug#56729] [RFC PATCH 05/10] gnu: lcalc: Update to 2.0.5 vicvbcun
2022-07-23 20:52 ` [bug#56729] [RFC PATCH 06/10] gnu: ntl: Update to 11.5.1 vicvbcun
2022-07-23 20:52 ` [bug#56729] [RFC PATCH 07/10] gnu: eclib: Update to 20220621 vicvbcun
2022-07-23 20:52 ` [bug#56729] [RFC PATCH 08/10] gnu: Add python-memory-allocator vicvbcun
2022-07-23 20:52 ` [bug#56729] [RFC PATCH 09/10] gnu: Add python-pplpy vicvbcun
2022-07-23 20:52 ` [bug#56729] [RFC PATCH 10/10] gnu: Add sagemath vicvbcun
2022-08-01 9:24 ` [bug#56729] [RFC PATCH 00/10] " Ludovic Courtès
2022-08-03 9:21 ` guix
2022-08-11 18:05 ` Andreas Enge
2022-08-08 14:40 ` Andreas Enge
2022-08-08 16:20 ` guix
2022-08-09 10:47 ` Andreas Enge
2022-08-09 10:55 ` ( via Guix-patches via
2022-08-09 12:19 ` Andreas Enge
2022-08-09 13:40 ` vicvbcun
2022-08-12 8:50 ` Andreas Enge
2022-08-12 8:58 ` Andreas Enge
2022-08-09 21:32 ` Maxime Devos
2022-08-10 8:26 ` Andreas Enge
2022-08-10 9:03 ` Andreas Enge
2022-08-06 1:28 ` vicvbcun
2022-08-08 15:45 ` vicvbcun [this message]
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 01/29] gnu: Remove ecl-16 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 02/29] gnu: edge-addition-planarity-suite: Update to 3.0.2.0 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 03/29] gnu: gap: Update to 4.11.1 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 04/29] gnu: cliquer: Update to 1.22 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 05/29] gnu: lcalc: Update to 2.0.5 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 06/29] gnu: ntl: Update to 11.5.1 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 07/29] gnu: eclib: Update to 20220621 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 08/29] gnu: lrcalc: Update to 2.1 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 09/29] gnu: maxima: Update to 5.46.0 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 10/29] gnu: python-sympy: Update to 1.10.1 vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 11/29] gnu: cddlib: Update to 0.94m vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 12/29] gnu: Add python-memory-allocator vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 13/29] gnu: Add python-pplpy vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 14/29] gnu: Add primecount vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 15/29] gnu: Add python-primecountpy vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 16/29] gnu: Add python-lrcalc vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 17/29] gnu: Add palp vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 18/29] gnu: Add gfan vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 19/29] gnu: Add flintqs vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 20/29] gnu: Add tachyon vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 21/29] gnu: Add sagemath-data-conway-polynomials vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 22/29] gnu: Add sagemath-data-elliptic-curves vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 23/29] gnu: Add sagemath-data-combinatorial-designs vicvbcun
2022-08-08 15:45 ` [bug#56729] [RFC PATCH v2 24/29] gnu: Add sagemath-data-graphs vicvbcun
2022-08-08 15:46 ` [bug#56729] [RFC PATCH v2 25/29] gnu: Add sagemath-data-poytopes-db vicvbcun
2022-08-08 15:46 ` [bug#56729] [RFC PATCH v2 26/29] gnu: Add pari-galdata vicvbcun
2022-08-08 15:46 ` [bug#56729] [RFC PATCH v2 27/29] gnu: Add sagemath-just-build vicvbcun
2022-08-08 15:46 ` [bug#56729] [RFC PATCH v2 28/29] gnu: Add sagemath-with-dependencies vicvbcun
2022-08-08 15:46 ` [bug#56729] [RFC PATCH v2 29/29] gnu: Add sagemath-tests vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 00/32] Add sagemath vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 01/32] gnu: python-cysignals: Update to 1.11.2 vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 02/32] gnu: cliquer: Update to 1.22 vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 03/32] gnu: Add python-memory-allocator vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 04/32] gnu: python-gmpy2: Move to (gnu packages multiprecision) vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 05/32] gnu: Add python-pplpy vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 06/32] gnu: Add primecount vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 07/32] gnu: Add python-primecountpy vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 08/32] gnu: Add python-lrcalc vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 09/32] gnu: Add palp vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 10/32] gnu: Add gfan vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 11/32] gnu: Add sympow vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 12/32] download: Add SageMath mirrors vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 13/32] gnu: Add sagemath-data-combinatorial-designs vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 14/32] gnu: Add sagemath-data-conway-polynomials vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 15/32] gnu: Add sagemath-data-elliptic-curves vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 16/32] gnu: Add sagemath-data-graphs vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 17/32] gnu: Add sagemath-data-polytopes-db vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 18/32] gnu: pari-gp: Use G-expression vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 19/32] gnu: pari-gp: Install galdata vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 20/32] gnu: gap: Build reproducibly vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 21/32] gnu: gap: Compile atlasrep package vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 22/32] gnu: gap: Remove leftover source and build files vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 23/32] gnu: maxima: Build with ecl vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 24/32] gnu: maxima: Install maxima.fas vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 25/32] gnu: maxima: Apply matrix exponentiation patch vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 26/32] gnu: Add tachyon vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 27/32] gnu: singular: Update to 4.3.2 vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 28/32] gnu: singular: Don't compress info file vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 29/32] gnu: eclib: Update to 20230424 vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 30/32] gnu: python-pythran: Update to 0.13.1 vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 31/32] gnu: Add python-sagemath-standard vicvbcun
2023-05-29 20:38 ` [bug#56729] [RFC PATCH v3 32/32] gnu: Add sagemath vicvbcun
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