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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <66843@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#66843] [PATCH 09/11] gnu: Add r-piano.
Date: Tue, 31 Oct 2023 11:57:27 +0100	[thread overview]
Message-ID: <c89d20246a39ee97e7fbd69dbf9ea554ccb560ee.1698749849.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <4d5576bdd09911a6a51bbe87a1b905bd07ca0c4b.1698749849.git.madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-piano): New variable.

Change-Id: I1bc2387563510c47614748423a3b510adc0486aa
---
 gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6a3606b399..e2fd9c5016 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9109,6 +9109,43 @@ (define-public r-pfamanalyzer
 domain isotypes from pfam data.")
     (license license:expat)))
 
+(define-public r-piano
+  (package
+    (name "r-piano")
+    (version "2.16.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "piano" version))
+       (sha256
+        (base32 "0rm9afgq4n7yinmx09b0xd17wgzhbswm80vcjmmwxr6fv1741xfy"))))
+    (properties `((upstream-name . "piano")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biobase
+           r-biocgenerics
+           r-dt
+           r-fgsea
+           r-gplots
+           r-htmlwidgets
+           r-igraph
+           r-marray
+           r-relations
+           r-scales
+           r-shiny
+           r-shinydashboard
+           r-shinyjs
+           r-visnetwork))
+    (native-inputs (list r-knitr))
+    (home-page "https://varemo.github.io/piano/")
+    (synopsis "Platform for integrative analysis of omics data")
+    (description
+     "Piano performs gene set analysis using various statistical methods, from
+different gene level statistics and a wide range of gene-set collections.  The
+package contains functions for combining the results of multiple runs of gene
+set analyses.")
+    (license license:gpl2+)))
+
 ;; This is a CRAN package, but it depends on a Bioconductor package:
 ;; r-aroma-light, r-dnacopy..
 (define-public r-pscbs
-- 
2.41.0





  parent reply	other threads:[~2023-10-31 11:16 UTC|newest]

Thread overview: 13+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-10-31 10:53 [bug#66843] [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 01/11] gnu: Add r-r3cseq Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 02/11] gnu: Add r-r4rna Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 03/11] gnu: Add r-nistunits Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 04/11] gnu: Add r-celestial Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 05/11] gnu: Add r-magicaxis Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 06/11] gnu: Add r-relations Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 07/11] gnu: Add r-profmem Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 08/11] gnu: Add r-bench Mădălin Ionel Patrașcu
2023-10-31 10:57   ` Mădălin Ionel Patrașcu [this message]
2023-10-31 10:57   ` [bug#66843] [PATCH 10/11] gnu: Add r-coregx Mădălin Ionel Patrașcu
2023-10-31 10:57   ` [bug#66843] [PATCH 11/11] gnu: Add r-radiogx Mădălin Ionel Patrașcu
2023-10-31 13:00 ` bug#66843: [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq Ricardo Wurmus

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