From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <66843@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#66843] [PATCH 09/11] gnu: Add r-piano.
Date: Tue, 31 Oct 2023 11:57:27 +0100 [thread overview]
Message-ID: <c89d20246a39ee97e7fbd69dbf9ea554ccb560ee.1698749849.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <4d5576bdd09911a6a51bbe87a1b905bd07ca0c4b.1698749849.git.madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-piano): New variable.
Change-Id: I1bc2387563510c47614748423a3b510adc0486aa
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6a3606b399..e2fd9c5016 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9109,6 +9109,43 @@ (define-public r-pfamanalyzer
domain isotypes from pfam data.")
(license license:expat)))
+(define-public r-piano
+ (package
+ (name "r-piano")
+ (version "2.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "piano" version))
+ (sha256
+ (base32 "0rm9afgq4n7yinmx09b0xd17wgzhbswm80vcjmmwxr6fv1741xfy"))))
+ (properties `((upstream-name . "piano")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-biocgenerics
+ r-dt
+ r-fgsea
+ r-gplots
+ r-htmlwidgets
+ r-igraph
+ r-marray
+ r-relations
+ r-scales
+ r-shiny
+ r-shinydashboard
+ r-shinyjs
+ r-visnetwork))
+ (native-inputs (list r-knitr))
+ (home-page "https://varemo.github.io/piano/")
+ (synopsis "Platform for integrative analysis of omics data")
+ (description
+ "Piano performs gene set analysis using various statistical methods, from
+different gene level statistics and a wide range of gene-set collections. The
+package contains functions for combining the results of multiple runs of gene
+set analyses.")
+ (license license:gpl2+)))
+
;; This is a CRAN package, but it depends on a Bioconductor package:
;; r-aroma-light, r-dnacopy..
(define-public r-pscbs
--
2.41.0
next prev parent reply other threads:[~2023-10-31 11:16 UTC|newest]
Thread overview: 13+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-10-31 10:53 [bug#66843] [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 01/11] gnu: Add r-r3cseq Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 02/11] gnu: Add r-r4rna Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 03/11] gnu: Add r-nistunits Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 04/11] gnu: Add r-celestial Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 05/11] gnu: Add r-magicaxis Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 06/11] gnu: Add r-relations Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 07/11] gnu: Add r-profmem Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 08/11] gnu: Add r-bench Mădălin Ionel Patrașcu
2023-10-31 10:57 ` Mădălin Ionel Patrașcu [this message]
2023-10-31 10:57 ` [bug#66843] [PATCH 10/11] gnu: Add r-coregx Mădălin Ionel Patrașcu
2023-10-31 10:57 ` [bug#66843] [PATCH 11/11] gnu: Add r-radiogx Mădălin Ionel Patrașcu
2023-10-31 13:00 ` bug#66843: [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq Ricardo Wurmus
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