From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: 63976@debbugs.gnu.org
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#63976] [PATCH] gnu: Add python-mudata.
Date: Fri, 9 Jun 2023 16:56:34 +0200 [thread overview]
Message-ID: <b6ce59ff756491be94ba63edc8c7bade4d615ef8.1686322594.git.navid.afkhami@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (python-mudata): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1caea80f86..13ae47d858 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3352,6 +3352,32 @@ (define-public python-mofax
models trained with MOFA+ in Python.")
(license license:expat))))
+(define-public python-mudata
+ (let ((commit "392f5464135d687fe64bc571d35cbf557b796ff0")
+ (revision "0"))
+ (package
+ (name "python-mudata")
+ (version (git-version "0.2.3" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/scverse/mudata")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02h0k1q57589r0hdv8nwg1vk7g2ljvn5g66c47fy5gdilbm3gjws"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-anndata python-h5py python-pandas python-flit-core))
+ (native-inputs (list python-numpy python-pytest python-zarr))
+ (home-page "https://github.com/scverse/mudata")
+ (synopsis "Python package for multi-omics data analysis")
+ (description
+ "Mudata is a Python package for multi-omics data analysis.
+It is designed to provide functionality to load, process, and store
+multimodal omics data.")
+ (license license:bsd-3))))
+
(define-public python-pyega3
(package
(name "python-pyega3")
base-commit: dd587a4fefbd8841f609910af36e13aa890781b7
prerequisite-patch-id: c5352e197d46cff8e37f0ff85044983c550a9663
--
2.34.1
next reply other threads:[~2023-06-09 14:57 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-06-09 14:56 Navid Afkhami [this message]
2023-06-09 15:09 ` bug#63976: [PATCH] gnu: Add python-mudata Ricardo Wurmus
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