[bug#72219] [PATCH 00/34] Astronomy update 2024/07

[bug#72219] [PATCH 00/34] Astronomy update 2024/07

[Sharlatan Hellseher]

Hi Guix!

Non of the Windows upgrades whoopsy could stop me to prepare a patch series on
this day because it's 20th of the current month and it's time for new Astro
packages and refreshing exiting ones to the latest versions ^.-

Let's starts from main highlights:
- stellarium is refreshed to the latest upstream version, it's a lovely
  virtual observatory.
- CFITSIO is on the latest available version, quite a de facto software widely
  used developing by NASA
- Initiation of bringing <https://glueviz.org/> to Guix
- More packages from Astropy affilated list
  <https://www.astropy.org/affiliated/registry.json>
- License checked for Guix <https://github.com/iraf-community/iraf/issues/403>

I've introduced python-pandas.  Maybe someone from Python team would have tie
to check the build against the latest version.

- added [10/10]
  - [X] python-ads :: Python client to NASA's Astrophysics Data System
  - [X] python-dunamai :: Dynamic version generation
  - [X] python-echo :: Callback Properties in Python
  - [X] python-glue-core :: Multidimensional data visualization project
  - [X] python-kanon :: History of astronomy
  - [X] python-looseversion :: Version numbering for anarchists and software
    realists
  - [X] python-mpl-scatter-density :: Matplotlib helpers to make density
    scatter plots
  - [X] python-poetry-dynamic-versioning :: Poetry plugin enabling VCS tags
    dynamic versioning
  - [X] python-sbpy :: Python module for small-body planetary astronomy
  - [X] python-sncosmo :: Package for supernova cosmology based on astropy

- updated [16/16]
  - [X] cfitsio :: 4.4.1->4.4.1
  - [X] python-asdf :: 3.2.0->3.3.0
  - [X] python-asdf-zarr :: 0.0.3->0.0.4
  - [X] python-astropy-iers-data :: 0.2024.6.17.0.31.35->0.2024.7.15.0.31.42
  - [X] python-crds :: 11.17.25->11.17.26
  - [X] python-czml3 :: 0.7.0->1.0.1
  - [X] python-extension-helpers :: 1.0.0->1.1.1
  - [X] python-jwst :: 1.14.0->1.15.1
  - [X] python-photutils :: 1.12->1.13.0
  - [X] python-pytest-openfiles :: 0.5.0->0.6.0
  - [X] python-stdatamodels :: 1.10.1->2.0.0
  - [X] python-stpipe :: 0.5.2->0.6.0
  - [X] python-sunpy :: 5.1.4->5.1.5
  - [X] python-tweakwcs :: 0.8.7->0.8.8
  - [X] skymaker :: 4.2.0-0.1a69c47->3.10.5, upstream applied proper tag.
  - [X] stellarium :: 24.1->24.2

Next month continue with IRAF tests,
bringing more Glue's projects.

Build stats:
--8<---------------cut here---------------start------------->8---
> ./pre-inst-env guix build python-sncosmo python-looseversion python-glue-core
  python-mpl-scatter-density python-echo python-sbpy python-ads python-kanon
  python-poetry-dynamic-versioning python-dunamai python-fast-histogram
  python-tweakwcs python-sunpy python-stdatamodels python-stpipe
  python-pytest-openfiles python-extension-helpers python-photutils python-jwst
  python-czml3 python-crds python-astropy-iers-data python-asdf-zarr python-asdf
  stellarium skymaker cfitsio python-pytest@8.2.2 python-pluggy@1.5.0

/gnu/store/ns119hfqrd7kz0af3qlf7b9ir2mpqk1g-python-pluggy-1.5.0
/gnu/store/v9y084shj351x9s1dlzr6dl032c0g5dn-python-pytest-8.2.2
/gnu/store/36zj3j2n36kdi2xwi1zls3jsblcdp5jq-cfitsio-4.4.1
/gnu/store/1pi4qc8qvs8jinjvhrnsxwh3maz6gykc-skymaker-3.10.5
/gnu/store/9zpxqd2rwckzy6xi9wmlpq489a3b84ll-stellarium-24.2
/gnu/store/fkdybvr09dm1pvxqic0rsx0pzrk89mrx-python-asdf-3.3.0
/gnu/store/ysqyz642y6hqvkybb7jg9p6m8700w373-python-asdf-zarr-0.0.4
/gnu/store/s8vc67v9ddv5min3c67ydans6vzf4092-python-astropy-iers-data-0.2024.7.15.0.31.42
/gnu/store/jdl0g478f57i7lrbanjp5n0x3q0naanj-python-crds-11.17.26
/gnu/store/zvmv2y4cwbyjchza5qihnijpmjyhwx93-python-czml3-1.0.1
/gnu/store/sfhvcb3mgb9xwbypnj98nyyqfy1hw4wx-python-jwst-1.15.1
/gnu/store/969qhwxdqz7zbpfgskik45p3bdxdx2ps-python-photutils-1.13.0
/gnu/store/sfh1dycvwpi0p6xf3m8cakpqmgw86f3m-python-extension-helpers-1.1.1
/gnu/store/wwybid4chi7y6vmv847p7c2vybsrzlfc-python-pytest-openfiles-0.6.0
/gnu/store/jx1gmdxm2x0cx0bx9f5ll0alqr0q21gc-python-stpipe-0.6.0
/gnu/store/2rs35qldzyjz5pjbnzbzqz5azhk5xrfy-python-stdatamodels-2.0.0
/gnu/store/b576zmal4ayb2jsh92g4csk31sg355b1-python-sunpy-5.1.5
/gnu/store/d0ynp4b2alzwsxvjmyqcxgsgv4xgjh2h-python-tweakwcs-0.8.8
/gnu/store/4p5yj8wrlbbfd4xcshga7gqzarx0fh0y-python-fast-histogram-0.14
/gnu/store/3rxmz18yd4mjskjcvcahksvf2nxnzhnm-python-dunamai-1.21.2
/gnu/store/wy459isgl5w3a7rinvdvh5dikzd304in-python-poetry-dynamic-versioning-1.4.0
/gnu/store/qjwnalk04j3r9bcwbs5zhcrmdki24yh8-python-kanon-0.6.6
/gnu/store/8pa2nx8awqbxfd615mx9fcx23y6m5k2z-python-ads-0.12.6
/gnu/store/kbdfcdflhx2r0rairacm0z166xga4j9c-python-sbpy-0.4.0
/gnu/store/v53plfas0n51p8rvpyihnbd9xapzc1c0-python-echo-0.8.0
/gnu/store/dbzjfyq6vpc44y679pm8v3a01sb84w3q-python-mpl-scatter-density-0.7
/gnu/store/ajmny6xgn3alyqr35q6acwhjs8h8cp6p-python-glue-core-1.21.1
/gnu/store/1gl6kc45997gddfb076d4zp65ziji9pg-python-looseversion-1.3.0
/gnu/store/cxpxslld7ryc92d90r71ar30fdjn0k61-python-sncosmo-2.11.1
--8<---------------cut here---------------end--------------->8---

Dependent build stats:
--8<---------------cut here---------------start------------->8---
> ./pre-inst-env guix refresh --list-dependent python-sncosmo
  python-looseversion python-glue-core python-mpl-scatter-density python-echo
  python-sbpy python-ads python-kanon python-poetry-dynamic-versioning
  python-dunamai python-fast-histogram python-tweakwcs python-sunpy
  python-stdatamodels python-stpipe python-pytest-openfiles
  python-extension-helpers python-photutils python-jwst python-czml3 python-crds
  python-astropy-iers-data python-asdf-zarr python-asdf stellarium skymaker
  cfitsio python-pytest@8.2.2 python-pluggy@1.5.0

Building the following 35 packages would ensure 99 dependent packages are
rebuilt: alfa@2.2 splash@3.10.3 python-cesium@0.12.1 scamp@2.10.0
python-viresclient@0.11.6 python-sncosmo@2.11.1 python-regularizepsf@0.3.4
python-astroplan@0.10 python-poliastro@0.17.0 python-naima@0.10.0
python-kanon@0.6.6 siril@1.2.3 aoflagger@3.4.0 indi@2.0.8 swarp@2.41.5
gnuastro@0.22 imppg@0.6.5 stellarium@24.2 julia-wcs@0.6.2 sextractor@2.28.0
glnemo2@1.21.0 phd2@2.6.13 julia-fitsio@0.17.1 gwenview@24.05.2 labplot@2.10.1
python-asdf-compression@0.0.1-0.57cc7e7 python-radiospectra@0.5.0
python-astroalign@2.5.1 python-glue-core@1.21.1 python-aplpy@2.1.0
python-statmorph@0.5.7 ginga-qt5@5.1.0 python-sbpy@0.4.0
python-jwst-reffiles@1.0.1 python-asdf-zarr@0.0.4

/gnu/store/ysqyz642y6hqvkybb7jg9p6m8700w373-python-asdf-zarr-0.0.4
/gnu/store/84xcn2nv0fbs1r3mi5bbvk1nizbxw0as-python-jwst-reffiles-1.0.1
/gnu/store/kbdfcdflhx2r0rairacm0z166xga4j9c-python-sbpy-0.4.0
/gnu/store/yj563zbqhj2zbm03fcaj9fxnvcckb4bf-ginga-qt5-5.1.0
/gnu/store/5kssg5pfnqzj9df9rq12sqk2lvq1dgmq-python-statmorph-0.5.7
/gnu/store/9i9x0q1cqyl4b0rfjn1mn03rg7q4cpwk-python-aplpy-2.1.0
/gnu/store/ajmny6xgn3alyqr35q6acwhjs8h8cp6p-python-glue-core-1.21.1
/gnu/store/cs637gjcifi3imm7gj9rfdcqrfpf52wq-python-astroalign-2.5.1
/gnu/store/8wab1lqkbjhadkxrk106j8dyk06hnamz-python-radiospectra-0.5.0
/gnu/store/n6ymz88zf75x5fkivsb1rc1l5pv1bya6-python-asdf-compression-0.0.1-0.57cc7e7
/gnu/store/rkna1j5rkc42ks6xfpxmwl1dr545hv8r-labplot-2.10.1
/gnu/store/djq4rfacn22f7bs18snwawziiv05lkxh-gwenview-24.05.2
/gnu/store/4cza9f5qk8y7326i28ljv904hsavq8mi-julia-fitsio-0.17.1
/gnu/store/klrrb07aysli7pr90v9rlqbk9bbbkdm8-phd2-2.6.13
/gnu/store/8nmxsypv7syl1v568cfi972k997bjmah-glnemo2-1.21.0
/gnu/store/qiqm65f1gpwqvb4354562k4cmk5vnnba-sextractor-2.28.0
/gnu/store/zn15n151bl873q6z5pw2vmrxxjq91g9g-julia-wcs-0.6.2
/gnu/store/9zpxqd2rwckzy6xi9wmlpq489a3b84ll-stellarium-24.2
/gnu/store/rhsp7k9gaf35qhgqwmw4ynfyr0apvv5i-imppg-0.6.5
/gnu/store/i6cmrrfsqdcjdai2aqyx50pgr5c5k7bq-gnuastro-0.22
/gnu/store/q8xal91m54rd6j56jjpfwpkp9hch74f5-swarp-2.41.5
/gnu/store/k0l0j3mh601ihw9jj8ll2dddxakhrr14-indi-2.0.8
/gnu/store/q9vnz58wmrfylzcyfwirn51q4m5w68l3-aoflagger-3.4.0
/gnu/store/nym050j7b129kv55cg9kswlpl4fx13r5-siril-1.2.3
/gnu/store/qjwnalk04j3r9bcwbs5zhcrmdki24yh8-python-kanon-0.6.6
/gnu/store/071mvwx4dlfvm62b09arng6qf6zblj8b-python-naima-0.10.0
/gnu/store/b8i5znj8vh0wz2kq0xcjravvyvvcrbkq-python-poliastro-0.17.0
/gnu/store/y2540nlhvrkc1jyd7dvzlgrmd3mp8x6f-python-astroplan-0.10
/gnu/store/pzyimqdd5rmdn2lhj6f732j5s8plrk27-python-regularizepsf-0.3.4
/gnu/store/cxpxslld7ryc92d90r71ar30fdjn0k61-python-sncosmo-2.11.1
/gnu/store/q5imkcphlwhxincl22j4g4wmgvcw2va1-python-viresclient-0.11.6
/gnu/store/badbkwhfdzwn8ndvwcvdqnhhqsfc4b7z-scamp-2.10.0
/gnu/store/811y20h97ci19mkk1qxaf3v7alfkz83b-python-cesium-0.12.1
/gnu/store/8rkv3a7fywh9bdg8yk4z5jpz45lrrgq8-splash-3.10.3
/gnu/store/ng6yvr2fl556l5l69px8j8ak0m1h5x57-alfa-2.2
--8<---------------cut here---------------end--------------->8---

Sharlatan Hellseher (34):
  gnu: Add python-pluggy-next.
  gnu: Add python-pytest-8.
  gnu: cfitsio: Update to 4.4.1.
  gnu: skymaker: Update to 3.10.5.
  gnu: skymaker: Fix indentation.
  gnu: stellarium: Update to 24.2.
  gnu: python-asdf: Update to 3.3.0.
  gnu: python-asdf-zarr: Update to 0.0.4.
  gnu: python-astropy-iers-data: Update to 0.2024.7.15.0.31.42.
  gnu: python-crds: Update to 11.17.26.
  gnu: python-czml3: Update to 1.0.1.
  gnu: python-czml3: Adjust indentation.
  gnu: python-jwst: Update to 1.15.1.
  gnu: python-photutils: Update to 1.13.0.
  gnu: python-extension-helpers: Update to 1.1.1.
  gnu: python-extension-helpers: Enable tests.
  gnu: python-pytest-openfiles: Update to 0.6.0.
  gnu: python-pytest-openfiles: Simplify package.
  gnu: python-stpipe: Update to 0.6.0.
  gnu: python-stpipe: Improve indentation.
  gnu: python-stdatamodels: Update to 2.0.0.
  gnu: python-sunpy: Update to 5.1.5.
  gnu: python-tweakwcs: Update to 0.8.8.
  gnu: python-fast-histogram: Adjust inputs.
  gnu: Add python-dunamai.
  gnu: Add python-poetry-dynamic-versioning.
  gnu: Add python-kanon.
  gnu: Add python-ads.
  gnu: Add python-sbpy.
  gnu: Add python-echo.
  gnu: Add python-mpl-scatter-density.
  gnu: Add python-glue-core.
  gnu: Add python-looseversion.
  gnu: Add python-sncosmo.

 gnu/packages/astronomy.scm      | 482 ++++++++++++++++++++++++++------
 gnu/packages/check.scm          |  30 ++
 gnu/packages/python-build.scm   |  12 +
 gnu/packages/python-check.scm   |  16 +-
 gnu/packages/python-science.scm |  46 ++-
 gnu/packages/python-xyz.scm     | 211 ++++++++++++--
 6 files changed, 666 insertions(+), 131 deletions(-)


base-commit: 1fa4d658d808202f98003d1488f8e44daee370a9
-- 
2.41.0

[bug#72219] [PATCH 01/34] gnu: Add python-pluggy-next.

[Sharlatan Hellseher]

* gnu/packages/python-build.scm (python-pluggy-next): New variable.

Change-Id: If3ec3f930a799df9602db71112a6c6a5272b524c
---
 gnu/packages/python-build.scm | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 71f9e5c7da..72da369208 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -87,6 +87,18 @@ (define-public python-pluggy
    (home-page "https://pypi.org/project/pluggy/")
    (license license:expat)))
 
+(define-public python-pluggy-next
+  (package/inherit python-pluggy
+    (name "python-pluggy")
+    (version "1.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pluggy" version))
+       (sha256
+        (base32 "1w8c3mpliqm9biqw75ci8cfj1x5pb6g5zwblqp27ijgxjj7aizrc"))))
+    (build-system pyproject-build-system)))
+
 (define-public python-toml
   (package
     (name "python-toml")
-- 
2.41.0

[bug#72219] [PATCH 02/34] gnu: Add python-pytest-8.

[Sharlatan Hellseher]

* gnu/packages/check.scm (python-pytest-8): New variable.

Change-Id: Ie584a48a2749cc7b196e373fe4e6e08f47165620
---
 gnu/packages/check.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 3bfcf5a37e..77e5bd6ef6 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1388,6 +1388,36 @@ (define-public python-pytest
 and many external plugins.")
     (license license:expat)))
 
+(define-public python-pytest-8
+  (package/inherit python-pytest
+    (name "python-pytest")
+    (version "8.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pytest" version))
+       (sha256
+        (base32 "0xvr25qvmdh6z03jpgg24adhgqkvkal2g2v8vk63j6909q8bhjyy"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-k" (string-append
+                    "not test_code_highlight_continuation"
+                    " and not test_code_highlight"
+                    " and not test_code_highlight_custom_theme"
+                    " and not test_code_highlight_invalid_theme"
+                    " and not test_code_highlight_invalid_theme_mode"
+                    " and not test_code_highlight_simple"
+                    " and not test_color_yes"
+                    " and not test_comparisons_handle_colors"
+                    " and not test_empty_NO_COLOR_and_FORCE_COLOR_ignored"
+                    " and not test_remove_dir_prefix"))))
+    (propagated-inputs
+     (modify-inputs (package-propagated-inputs python-pytest)
+       (append python-exceptiongroup)
+       (replace "python-pluggy" python-pluggy-next)))))
+
 (define-public python-pytest-next
   (package/inherit python-pytest
     (name "python-pytest")
-- 
2.41.0

[bug#72219] [PATCH 03/34] gnu: cfitsio: Update to 4.4.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (cfitsio): Update to 4.4.1.

Change-Id: Ia589fb141192b59ee5e422a8106da89dff931e85
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 01ef7304d9..bbffe744ab 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -536,7 +536,7 @@ (define-public celestia-gtk
 (define-public cfitsio
   (package
     (name "cfitsio")
-    (version "4.4.0")
+    (version "4.4.1")
     (source
      (origin
        (method url-fetch)
@@ -544,7 +544,7 @@ (define-public cfitsio
              "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
              "cfitsio-" version ".tar.gz"))
        (sha256
-        (base32 "1abb4ky6pjyi9f9ly8qjmkb5h25d5xxqlrxrgjg86q77bbwhr44m"))))
+        (base32 "098x1l8ijwsjp2ivp3v7pamrmpgwj5xmgb4yppm9w3w044zxr8b6"))))
     (build-system gnu-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#72219] [PATCH 04/34] gnu: skymaker: Update to 3.10.5.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (skymaker): Update to 3.10.5.

Change-Id: Ib66f35834bdf3d6ce7d1b6924415a3e49b3ae7f9
---
 gnu/packages/astronomy.scm | 13 +++++--------
 1 file changed, 5 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index bbffe744ab..ae2593e8e4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1467,27 +1467,24 @@ (define-public splash
     (license license:gpl2+)))
 
 (define-public skymaker
-  ;; XXX: No version tag available in GitHub.
-  ;; See: https://github.com/astromatic/skymaker/issues/3
-  (let ((commit "1a69c4716bdc9b5c6d4a917b0bc2dbd47635c459")
-        (revision "0"))
     (package
       (name "skymaker")
-      (version (git-version "4.2.0" revision commit))
+      (version "3.10.5")
       (source
        (origin
          (method git-fetch)
          (uri (git-reference
                (url "https://github.com/astromatic/skymaker")
-               (commit commit)))
+               (commit version)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "1vin4vgvcmqmwjdchsxnap374559rksz55xmaliawnl3qpzxn1nk"))))
+          (base32 "0kcy0lfm25gihahpr41ghhw3b8znzczzg9rrlkfih043h2pfsm5l"))))
       (build-system gnu-build-system)
       (arguments
        (list
         #:configure-flags
         #~(list
+           "CPPFLAGS=-fcommon"
            (string-append
             "--with-fftw-libdir=" #$(this-package-input "fftwf") "/lib")
            (string-append
@@ -1503,7 +1500,7 @@ (define-public skymaker
 object lists in ASCII generated by the Stuff program to produce realistic
 astronomical fields.  SkyMaker is part of the
 @uref{https://www.astromatic.net/projects/efigi, EFIGI} development project.")
-      (license license:gpl3+))))
+      (license license:gpl3+)))
 
 (define-public stackistry
   (package
-- 
2.41.0

[bug#72219] [PATCH 05/34] gnu: skymaker: Fix indentation.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (skymaker): Fix indentation.

Change-Id: I2eeecb451d3da7004794ba55f687a2630ef20bcd
---
 gnu/packages/astronomy.scm | 62 +++++++++++++++++++-------------------
 1 file changed, 31 insertions(+), 31 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ae2593e8e4..98e08fb6bd 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1467,40 +1467,40 @@ (define-public splash
     (license license:gpl2+)))
 
 (define-public skymaker
-    (package
-      (name "skymaker")
-      (version "3.10.5")
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/astromatic/skymaker")
-               (commit version)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "0kcy0lfm25gihahpr41ghhw3b8znzczzg9rrlkfih043h2pfsm5l"))))
-      (build-system gnu-build-system)
-      (arguments
-       (list
-        #:configure-flags
-        #~(list
-           "CPPFLAGS=-fcommon"
-           (string-append
-            "--with-fftw-libdir=" #$(this-package-input "fftwf") "/lib")
-           (string-append
-            "--with-fftw-incdir=" #$(this-package-input "fftwf") "/include"))))
-      (native-inputs
-       (list autoconf automake libtool pkg-config))
-      (inputs
-       (list fftwf))
-      (home-page "https://www.astromatic.net/software/skymaker")
-      (synopsis "Astronomical image simulator")
-      (description
-       "SkyMaker is a program that simulates astronomical images.  It accepts
+  (package
+    (name "skymaker")
+    (version "3.10.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/astromatic/skymaker")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0kcy0lfm25gihahpr41ghhw3b8znzczzg9rrlkfih043h2pfsm5l"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:configure-flags
+      #~(list
+         "CPPFLAGS=-fcommon"
+         (string-append
+          "--with-fftw-libdir=" #$(this-package-input "fftwf") "/lib")
+         (string-append
+          "--with-fftw-incdir=" #$(this-package-input "fftwf") "/include"))))
+    (native-inputs
+     (list autoconf automake libtool pkg-config))
+    (inputs
+     (list fftwf))
+    (home-page "https://www.astromatic.net/software/skymaker")
+    (synopsis "Astronomical image simulator")
+    (description
+     "SkyMaker is a program that simulates astronomical images.  It accepts
 object lists in ASCII generated by the Stuff program to produce realistic
 astronomical fields.  SkyMaker is part of the
 @uref{https://www.astromatic.net/projects/efigi, EFIGI} development project.")
-      (license license:gpl3+)))
+    (license license:gpl3+)))
 
 (define-public stackistry
   (package
-- 
2.41.0

[bug#72219] [PATCH 06/34] gnu: stellarium: Update to 24.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (stellarium): Update to 24.2.

Change-Id: I316fee7463b9185fa264fdcd68e55f424b2d8f32
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 98e08fb6bd..96a5bd4004 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1566,7 +1566,7 @@ (define-public stackistry
 (define-public stellarium
   (package
     (name "stellarium")
-    (version "24.1")
+    (version "24.2")
     (source
      (origin
        (method git-fetch)
@@ -1575,7 +1575,7 @@ (define-public stellarium
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "15r8vg1xb4q8vwy10dfs4543bg6r3463sgrpkqk6fpxx46d8axxp"))))
+        (base32 "01iq1cxbhr3xknzpk4spflxj3msf9wk19b4lqlifi1pwaz18pb5n"))))
     (build-system cmake-build-system)
     ;; TODO: Complete documentation build and split into dedicated outputs.
     (arguments
-- 
2.41.0

[bug#72219] [PATCH 07/34] gnu: python-asdf: Update to 3.3.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf): Update to 3.3.0.
[native-inputs]: Remove python-pytest; add python-pytest-8.

Change-Id: Ia2d284156553741dea8cd5481840a79bb18d5f8e
---
 gnu/packages/astronomy.scm | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 96a5bd4004..7623b72fb4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -740,18 +740,18 @@ (define-public python-aplpy
 (define-public python-asdf
   (package
     (name "python-asdf")
-    (version "3.2.0")
+    (version "3.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "asdf" version))
        (sha256
-        (base32 "1wj556g15gwp6ir5hg083l15sifdsf23giqkx0jbn4lgdwjffbgr"))))
+        (base32 "0pwy8p3idz40a1z07d0lvvd0mwwya8g52wrp72frgpagjkvj3ska"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
-      #~(list "-n" "auto" "-p" "no:legacypath")
+      #~(list "-p" "no:legacypath")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'patch-pypojrect-toml
@@ -767,7 +767,9 @@ (define-public python-asdf
      (list python-fsspec
            python-packaging
            python-psutil
-           python-pytest
+           ;; 3.3.0+ requries newer version of pytest, see
+           ;; <https://github.com/asdf-format/asdf/issues/1804>.
+           python-pytest-8
            python-pytest-doctestplus
            python-pytest-remotedata
            python-pytest-xdist
-- 
2.41.0

[bug#72219] [PATCH 08/34] gnu: python-asdf-zarr: Update to 0.0.4.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf-zarr): Update to 0.0.4.

Change-Id: I4bb166d2b2c89d9159a52da91ea581a0c41614e1
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 7623b72fb4..31da463f26 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4832,13 +4832,13 @@ (define python-asdf-unit-schemas
 (define-public python-asdf-zarr
   (package
     (name "python-asdf-zarr")
-    (version "0.0.3")
+    (version "0.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "asdf_zarr" version))
        (sha256
-        (base32 "0ax7c9xarh6fi2yxm1z2p90mc3d57q23a7wc8av30xg8ririrl4s"))))
+        (base32 "0xddz4hnsypyvqxhi43alaqh2vl1ripcl4p63qn6dk2v90lra8c0"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-asdf python-fsspec python-zarr))
-- 
2.41.0

[bug#72219] [PATCH 09/34] gnu: python-astropy-iers-data: Update to 0.2024.7.15.0.31.42.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.7.15.0.31.42.

Change-Id: I14116d99a5852b389e1b7695c479a6a98c86f8fd
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 31da463f26..c642e4dbcd 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1782,13 +1782,13 @@ (define-public python-astropy-iers-data
     ;; In case of changing the source method git-fetch, consider to check the
     ;; tag as it's not following the PyPI version, see
     ;; <https://github.com/astropy/astropy-iers-data/issues/17>.
-    (version "0.2024.6.17.0.31.35")
+    (version "0.2024.7.15.0.31.42")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "astropy_iers_data" version))
        (sha256
-        (base32 "1sqp7g3akbv0d10jil5rkssldc5j57xqnl7wyg2dy5ayk2hdrq56"))))
+        (base32 "18wpqjyjqpxhp1x9rh1dxqmmif2amsbwwbw0zwfjh0dyrbb28c3h"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#72219] [PATCH 10/34] gnu: python-crds: Update to 11.17.26.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-crds): Update to 11.17.26.

Change-Id: Ifdee55f01db207bb36d8e408d393d51865927579
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c642e4dbcd..20063c3b06 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2172,13 +2172,13 @@ (define-public python-cmyt
 (define-public python-crds
   (package
     (name "python-crds")
-    (version "11.17.25")
+    (version "11.17.26")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "crds" version))
        (sha256
-        (base32 "18j0mn11nfgnbx42h1hzhfmyzg9ww9bgmrjxss8ni98kdj35q9kv"))))
+        (base32 "1qw1j3gz8l2z4ra33hl4zblc90kvwjf2ajb343n0xmf7lzs1gwc7"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#72219] [PATCH 11/34] gnu: python-czml3: Update to 1.0.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-czml3): Update to 1.0.1.

Change-Id: Ib9d21c24befcebb81455dafd4563570b97570613
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 20063c3b06..4f51cbfc63 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2217,7 +2217,7 @@ (define-public python-crds
 (define-public python-czml3
   (package
     (name "python-czml3")
-    (version "0.7.0")
+    (version "1.0.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2226,7 +2226,7 @@ (define-public python-czml3
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0pbwcsmc9nw591rck586ca9hwwhmm54rjjmp8gflhzq8b7f48lkc"))))
+                "1vm9ajpnwxncvsl1ix3jarqyi14b0703g12wsr8b0agkrjlpmvmx"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-attrs
-- 
2.41.0

[bug#72219] [PATCH 12/34] gnu: python-czml3: Adjust indentation.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-czml3): Adjust indentation.

Change-Id: I28fefff7cec5d6c1d69ce4b760da607289ce6e1e
---
 gnu/packages/astronomy.scm | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4f51cbfc63..65a9b733a1 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2218,15 +2218,15 @@ (define-public python-czml3
   (package
     (name "python-czml3")
     (version "1.0.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/poliastro/czml3")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1vm9ajpnwxncvsl1ix3jarqyi14b0703g12wsr8b0agkrjlpmvmx"))))
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/poliastro/czml3")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1vm9ajpnwxncvsl1ix3jarqyi14b0703g12wsr8b0agkrjlpmvmx"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-attrs
-- 
2.41.0

[bug#72219] [PATCH 13/34] gnu: python-jwst: Update to 1.15.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-jwst): Update to 1.15.1.

Change-Id: I19b2c0eb1a27857c5df1b2c356248c279adeab81
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 65a9b733a1..73deeef890 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4147,13 +4147,13 @@ (define-public python-jplephem
 (define-public python-jwst
   (package
     (name "python-jwst")
-    (version "1.14.0")
+    (version "1.15.1")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "jwst" version))
               (sha256
                (base32
-                "0knl2x0z3djsln8mi3a4bkxjz49iwmnr1v6wwsk13zvpkfq21vv4"))
+                "1nl5fixakqvjhg9q5biivwaqpi6lzx9w4fq0n6imwccag2gv1va3"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
2.41.0

[bug#72219] [PATCH 14/34] gnu: python-photutils: Update to 1.13.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-photutils): Update to 1.13.0.
[native-inputs]: Remove python-cython; add python-cython-3.

Change-Id: Id73418fc2324882055015fb2bb2664b00b38a1a3
---
 gnu/packages/astronomy.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 73deeef890..da63bbc5d0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2499,13 +2499,13 @@ (define-public python-photutils
     (name "python-photutils")
     ;; PyPI version for source archive is missing minor 0, See
     ;; <https://github.com/astropy/photutils/issues/1727>
-    (version "1.12")
+    (version "1.13.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "photutils" version))
        (sha256
-        (base32 "0y4kcj6qjnzwjswc0c2iimh11b0jz6b9ianbh58w4gnb4y71lr6r"))))
+        (base32 "1lhpcxh2adknzlmrddqd712yzpwdlqlw9jn49ajj4kz5z7822dns"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -2548,7 +2548,7 @@ (define-public python-photutils
            python-shapely
            python-tqdm))
     (native-inputs
-     (list python-cython
+     (list python-cython-3
            python-extension-helpers
            python-pytest-astropy
            python-pytest-xdist
-- 
2.41.0

[bug#72219] [PATCH 15/34] gnu: python-extension-helpers: Update to 1.1.1.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.1.1.

Change-Id: Ia5fa0b445232314134d0127add75fcf2082bbc59
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index fcf01f3d04..036bda6262 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5047,13 +5047,13 @@ (define-public python-exceptiongroup
 (define-public python-extension-helpers
 (package
   (name "python-extension-helpers")
-  (version "1.0.0")
+  (version "1.1.1")
   (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "extension-helpers" version))
       (sha256
-        (base32 "1rjha07ds633fb81hn3i2yzk3v2flbi6qa091ix4mkvrgk3gl6ya"))))
+        (base32 "001zd6gfs9yrwjny1fxzycxx0kcasshlyl6rh1kgzm13ll2d6pgr"))))
   (build-system pyproject-build-system)
   ;; FIXME: pytest failed to load test suit, find out why.
   ;;  - _pytest.pathlib.ImportPathMismatchError: ('extension_helpers.conftes
-- 
2.41.0

[bug#72219] [PATCH 16/34] gnu: python-extension-helpers: Enable tests.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-extension-helpers): Adjust
indentation.
[source]: Swap to git checkout which contains tests.
[arguments]: <#:tests-flags>: Disable one failing tests.
<#:phases>: Add 'set-version phase. Use custom 'check phase.
[native-inputs]: Remove python-coverage. Add python-tomli.

Change-Id: I8a04811e43bc0f1c2e0761aca87c4888a1444fc1
---
 gnu/packages/python-xyz.scm | 66 +++++++++++++++++++++++--------------
 1 file changed, 42 insertions(+), 24 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 036bda6262..7ef8488bfc 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5045,33 +5045,51 @@ (define-public python-exceptiongroup
     (license license:expat)))
 
 (define-public python-extension-helpers
-(package
-  (name "python-extension-helpers")
-  (version "1.1.1")
-  (source
-    (origin
-      (method url-fetch)
-      (uri (pypi-uri "extension-helpers" version))
-      (sha256
-        (base32 "001zd6gfs9yrwjny1fxzycxx0kcasshlyl6rh1kgzm13ll2d6pgr"))))
-  (build-system pyproject-build-system)
-  ;; FIXME: pytest failed to load test suit, find out why.
-  ;;  - _pytest.pathlib.ImportPathMismatchError: ('extension_helpers.conftes
-  (arguments (list #:tests? #f))
-  (native-inputs
-    (list python-coverage
-          python-pytest
-          python-pytest-astropy
-          python-pytest-cov
-          python-setuptools-scm))
-  (home-page "https://extension-helpers.readthedocs.io")
-  (synopsis "Astropy ecosystem utilities for building and installing packages")
-  (description
-    "The extension-helpers package includes convenience helpers to assist with
+  (package
+    (name "python-extension-helpers")
+    (version "1.1.1")
+    (source
+     (origin
+       (method git-fetch) ; no tests in the PyPI tarball
+       (uri (git-reference
+             (url "https://github.com/astropy/extension-helpers")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1lkhypg21ydx03z03dppbf05zff40dyl0kn6nichzfdfpqnr5055"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; It tries to install it via pip: E ModuleNotFoundError: No module named
+      ;; 'helpers_test_package_fd9cc3a9_11fa_4a1a_b80e_c5b043949604'
+      #:test-flags #~(list "-k" "not test_only_pyproject[True]")
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; LookupError: setuptools-scm was unable to detect version for
+          ;; /tmp/guix-build-python-extension-helpers-1.1.1.drv-0/source.
+          (add-before 'build 'set-version
+            (lambda _
+              (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
+          (replace 'check
+            (lambda* (#:key tests? test-flags #:allow-other-keys)
+              (when tests?
+                (setenv "HOME" "/tmp")
+                (with-directory-excursion "/tmp"
+                  (apply invoke "pytest" "-v" test-flags))))))))
+    (native-inputs
+     (list python-pytest
+           python-pytest-astropy
+           python-pytest-cov
+           python-setuptools-scm
+           python-tomli))
+    (home-page "https://extension-helpers.readthedocs.io")
+    (synopsis "Astropy ecosystem utilities for building and installing packages")
+    (description
+     "The extension-helpers package includes convenience helpers to assist with
 building Python packages with compiled C/Cython extensions.  It is developed by
 the Astropy project but is intended to be general and usable by any Python
 package.")
-  (license license:bsd-3)))
+    (license license:bsd-3)))
 
 (define-public python-extras
   (package
-- 
2.41.0

[bug#72219] [PATCH 17/34] gnu: python-pytest-openfiles: Update to 0.6.0.

[Sharlatan Hellseher]

* gnu/packages/python-check.scm (python-pytest-openfiles): Update to 0.6.0.

Change-Id: I629c0b1ad56c313a850cbca6f58e66bb1d9920d7
---
 gnu/packages/python-check.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index cb46af3490..b6e401b443 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -840,13 +840,13 @@ (define-public python-pytest-metadata
 (define-public python-pytest-openfiles
   (package
     (name "python-pytest-openfiles")
-    (version "0.5.0")
+    (version "0.6.0")
     (source
      (origin
        (method url-fetch)
-       (uri (pypi-uri "pytest-openfiles" version))
+       (uri (pypi-uri "pytest_openfiles" version))
        (sha256
-        (base32 "0n0a7fdc9m86360y96l23fvdmd6rw04bl6h5xqgl9qxfv08jk70p"))))
+        (base32 "14x9f1l9a5ghf527i5qfcfa003mkrky1dhx2hfwq5nma9v1n0lgz"))))
     (build-system python-build-system)
     (arguments
      '(#:phases
-- 
2.41.0

[bug#72219] [PATCH 18/34] gnu: python-pytest-openfiles: Simplify package.

[Sharlatan Hellseher]

* gnu/packages/python-check.scm (python-pytest-openfiles)
[build-system]: Swap to pyproject-build-system.
[arguments]: <#:phases>: Use default 'chck phase.

Change-Id: I3bbbacd8694afdfee020f11d37f5c035bdad73f9
---
 gnu/packages/python-check.scm | 10 +---------
 1 file changed, 1 insertion(+), 9 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index b6e401b443..74e833686f 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -847,15 +847,7 @@ (define-public python-pytest-openfiles
        (uri (pypi-uri "pytest_openfiles" version))
        (sha256
         (base32 "14x9f1l9a5ghf527i5qfcfa003mkrky1dhx2hfwq5nma9v1n0lgz"))))
-    (build-system python-build-system)
-    (arguments
-     '(#:phases
-       (modify-phases %standard-phases
-         (replace 'check
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             ;; Make the installed plugin discoverable by Pytest.
-             (add-installed-pythonpath inputs outputs)
-             (invoke "pytest" "-vv"))))))
+    (build-system pyproject-build-system)
     (native-inputs
      (list python-setuptools-scm python-pytest))
     (propagated-inputs
-- 
2.41.0

[bug#72219] [PATCH 19/34] gnu: python-stpipe: Update to 0.6.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stpipe): Update to 0.6.0.

Change-Id: I381ba0d90aeb78055669c3d063bc82ae54ad42df
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index da63bbc5d0..b5eb1527d0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3522,13 +3522,13 @@ (define-public python-stdatamodels
 (define-public python-stpipe
   (package
     (name "python-stpipe")
-    (version "0.5.2")
+    (version "0.6.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "stpipe" version))
               (sha256
                (base32
-                "0r29m143ll1j9irixazrkqggzg9xbkcw7fl9xmi69zpxbh5mjgz0"))
+                "0iipbz5ydxxxk44q8ab0ylk7jpxjfhag4vgkhvpj67zs4s45sd8a"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
2.41.0

[bug#72219] [PATCH 20/34] gnu: python-stpipe: Improve indentation.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stpipe): Improve indentation.

Change-Id: I0889f1374aa0024c34eaf9a670c3d8beda40011a
---
 gnu/packages/astronomy.scm | 42 ++++++++++++++++++++++----------------
 1 file changed, 24 insertions(+), 18 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b5eb1527d0..e3494c9b07 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3523,30 +3523,36 @@ (define-public python-stpipe
   (package
     (name "python-stpipe")
     (version "0.6.0")
-    (source (origin
-              (method url-fetch)
-              (uri (pypi-uri "stpipe" version))
-              (sha256
-               (base32
-                "0iipbz5ydxxxk44q8ab0ylk7jpxjfhag4vgkhvpj67zs4s45sd8a"))
-              (modules '((guix build utils)))
-              (snippet
-               '(begin
-                  ;; Replace reference to external configobj.
-                  (substitute* (find-files "." "\\.py$")
-                    (("from astropy.extern import configobj") "import configobj")
-                    (("from astropy.extern.configobj import validate") "import validate")
-                    (("from astropy.extern.configobj.configobj import ") "from configobj import ")
-                    (("from astropy.extern.configobj.validate import ") "from validate import "))))))
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "stpipe" version))
+       (sha256
+        (base32 "0iipbz5ydxxxk44q8ab0ylk7jpxjfhag4vgkhvpj67zs4s45sd8a"))
+       (modules '((guix build utils)))
+       (snippet
+        '(begin
+           ;; Replace reference to external configobj.
+           (substitute* (find-files "." "\\.py$")
+             (("from astropy.extern import configobj") "import configobj")
+             (("from astropy.extern.configobj import validate") "import validate")
+             (("from astropy.extern.configobj.configobj import ") "from configobj import ")
+             (("from astropy.extern.configobj.validate import ") "from validate import "))))))
     (arguments
      (list
       ;; See https://github.com/spacetelescope/stpipe/issues/114
       #:test-flags #~(list "-k" "not test_roman_datamodel")))
     (build-system pyproject-build-system)
     (propagated-inputs
-     (list python-asdf python-astropy python-crds python-stdatamodels))
-    (native-inputs (list python-pytest python-pytest-doctestplus
-                         python-pytest-openfiles python-setuptools-scm))
+     (list python-asdf
+           python-astropy
+           python-crds
+           python-stdatamodels))
+    (native-inputs
+     (list python-pytest
+           python-pytest-doctestplus
+           python-pytest-openfiles
+           python-setuptools-scm))
     (home-page "https://github.com/spacetelescope/stpipe")
     (synopsis "Framework for calibration pipeline software")
     (description
-- 
2.41.0

[bug#72219] [PATCH 21/34] gnu: python-stdatamodels: Update to 2.0.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stdatamodels): Update to 2.0.0.

Change-Id: I98fcdc66ea6bf161503139a6192316a3748f0215
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e3494c9b07..43b0f217c1 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3477,13 +3477,13 @@ (define-public python-stcal
 (define-public python-stdatamodels
   (package
     (name "python-stdatamodels")
-    (version "1.10.1")
+    (version "2.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "stdatamodels" version))
        (sha256
-        (base32 "1h0imp6j9qrjadhvvqcgrx6dq94qhi0023c8c8r2wddhqrh0h5lg"))))
+        (base32 "0a47xf1zv71kv166z6rd9v75bw0jjmg70180af4yi4v4y7gnxvmm"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#72219] [PATCH 22/34] gnu: python-sunpy: Update to 5.1.5.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-sunpy): Update to 5.1.5.

Change-Id: If735089d542dfe376da0f11bc66163c5857f7158
---
 gnu/packages/astronomy.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 43b0f217c1..9814557b99 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2952,19 +2952,19 @@ (define-public python-sgp4
 (define-public python-sunpy
   (package
     (name "python-sunpy")
-    (version "5.1.4")
+    (version "5.1.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "sunpy" version))
        (sha256
-        (base32 "0c41h0ml8wh1jfjpny824jpjnaw6rrm6vklvjk2h1sw2iza71syb"))))
+        (base32 "1jdkkcv247chsj08wrxxv0m577ji5cg7mxx5pw7q0ahmnq93xk2p"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
       #~(list
-         "-n" "auto"
+         "--numprocesses" "auto"
          "-k" (string-append
                ;; XXX: Failed: DID NOT RAISE <class 'ModuleNotFoundError'>
                ;; It struggles to find python-opencsv package info with
-- 
2.41.0

[bug#72219] [PATCH 23/34] gnu: python-tweakwcs: Update to 0.8.8.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.8.

Change-Id: I9a324c7ec06e960da0fdd23c3b005c0351af8fef
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9814557b99..e8a1f52f26 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5118,13 +5118,13 @@ (define-public python-skyfield
 (define-public python-tweakwcs
   (package
     (name "python-tweakwcs")
-    (version "0.8.7")
+    (version "0.8.8")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "tweakwcs" version))
        (sha256
-        (base32 "0cch4z5zmmi1s02n1wdwss8p7qhrzyiajkaik0gga510kgdsvx48"))))
+        (base32 "148as0x1szk1wv13bwk947qs3rw5xj2286ccdbhzfzarng58a386"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-astropy
-- 
2.41.0

[bug#72219] [PATCH 24/34] gnu: python-fast-histogram: Adjust inputs.

[Sharlatan Hellseher]

* gnu/packages/python-science.scm (python-fast-histogram): Fix lint
warnings and adjust inputs.
[native-inputs]: Add python-setuptools-scm.

Change-Id: Ic51660d7542114f2bb45be4720ab4d899633e56d
---
 gnu/packages/python-science.scm | 15 +++++++++------
 1 file changed, 9 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 8ba3432637..7012a942d3 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1551,17 +1551,20 @@ (define-public python-fast-histogram
             (lambda _
               (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (propagated-inputs (list python-numpy))
-    (native-inputs (list python-hypothesis python-pytest))
+    (native-inputs
+     (list python-hypothesis
+           python-pytest
+           python-setuptools-scm))
     (home-page "https://github.com/astrofrog/fast-histogram")
     (synopsis "Fast simple 1D and 2D histograms")
     (description
      "The fast-histogram mini-package aims to provide simple and fast
-histogram functions for regular bins that don't compromise on performance. It
+histogram functions for regular bins that don't compromise on performance.  It
 doesn't do anything complicated - it just implements a simple histogram
-algorithm in C and keeps it simple. The aim is to have functions that are fast
-but also robust and reliable. The result is a 1D histogram function here that
-is 7-15x faster than @code{numpy.histogram}, and a 2D histogram function that
-is 20-25x faster than @code{numpy.histogram2d}.")
+algorithm in C and keeps it simple.  The aim is to have functions that are
+fast but also robust and reliable.  The result is a 1D histogram function here
+that is 7-15x faster than @code{numpy.histogram}, and a 2D histogram function
+that is 20-25x faster than @code{numpy.histogram2d}.")
     (license license:bsd-3)))
 
 (define-public python-fastcluster
-- 
2.41.0

[bug#72219] [PATCH 25/34] gnu: Add python-dunamai.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-dunamai): New variable.

Change-Id: Iabb0221c615ee345d1e557d2d428254929823283
---
 gnu/packages/python-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7ef8488bfc..195437c72d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -23435,6 +23435,47 @@ (define-public python-dulwich
     ;; Can be used with either license.
     (license (list license:asl2.0 license:gpl2+))))
 
+(define-public python-dunamai
+  (package
+    (name "python-dunamai")
+    (version "1.21.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "dunamai" version))
+       (sha256
+        (base32 "1i35i8ym6n8mpgrq31hivrvfciy12gv26jwlzimmkx9jy2spz0h5"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-k" "not test__version__from_git__shallow")
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; These steps are taked from NixOS package definition:
+          ;; nixpkgs/pkgs/development/python-modules/dunamai/default.nix
+          (add-before 'check 'pre-check
+            (lambda _
+              (setenv "PATH" (string-append #$output "/bin:" (getenv "PATH")))
+              (setenv "HOME" "/tmp")
+              (invoke "git" "config" "--global" "user.email" "nobody@example.com")
+              (invoke "git" "config" "--global" "user.name" "Nobody"))))))
+    (propagated-inputs
+     (list python-packaging))
+    (native-inputs
+     (list git-minimal
+           python-poetry-core
+           python-pytest))
+    (home-page "https://github.com/mtkennerly/dunamai")
+    (synopsis "Dynamic version generation")
+    (description
+     "Dunamai is Python library and command line tool for producing dynamic,
+standards-compliant version strings, derived from tags in your version control
+system.  This facilitates uniquely identifying nightly or per-commit builds in
+continuous integration and releasing new versions of your software simply by
+creating a tag.")
+    (license license:expat)))
+
 (define-public python-pbkdf2
   (package
     (name "python-pbkdf2")
-- 
2.41.0

[bug#72219] [PATCH 26/34] gnu: Add python-poetry-dynamic-versioning.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-poetry-dynamic-versioning): New
variable.

Change-Id: I2a9a38b2002426f5265cf0203b88dd523d1fa2b8
---
 gnu/packages/python-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 195437c72d..d36c96004e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1765,6 +1765,46 @@ (define-public python-plotille
 scatter plots, histograms and heatmaps in the terminal using braille dots.")
     (license license:expat)))
 
+(define-public python-poetry-dynamic-versioning
+  (package
+    (name "python-poetry-dynamic-versioning")
+    (version "1.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "poetry_dynamic_versioning" version))
+       (sha256
+        (base32 "19v9jrawbx1nwnwrd6giyzwfq50y2mjzkrsx0ga2sbx2a2yphlbj"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "--ignore=tests/test_integration.py"
+              ;; E RuntimeError: Unable to detect version control system. Not
+              ;; installed: Git, Mercurial, Darcs, Subversion, Bazaar, Fossil,
+              ;; Pijul.
+              "-k"
+              (string-append
+               "not test__get_version__defaults"
+               " and not test__get_version__format_jinja"
+               " and not test__get_version__format_jinja_with_enforced_style"
+               " and not test__get_version__format_jinja_imports_with_module_only"
+               " and not test__get_version__format_jinja_imports_with_module_and_item"))))
+    (native-inputs
+     (list python-poetry-core
+           python-pytest))
+    (propagated-inputs
+     (list poetry
+           python-dunamai
+           python-jinja2
+           python-tomlkit))
+    (home-page "https://github.com/mtkennerly/poetry-dynamic-versioning")
+    (synopsis "Poetry plugin enabling VCS tags dynamic versioning")
+    (description
+     "This package provides a build backend that patches Poetry Core to enable
+the versioning system in PEP 517 build frontends.")
+    (license license:expat)))
+
 (define-public python-portpicker
   (package
     (name "python-portpicker")
-- 
2.41.0

[bug#72219] [PATCH 27/34] gnu: Add python-kanon.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-kanon): New variable.

Change-Id: Ibff5d7b92f819c41bfb7f6b76e73c5815c8f3cae
---
 gnu/packages/astronomy.scm | 83 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 83 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e8a1f52f26..fa832ee93f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2381,6 +2381,89 @@ (define-public python-hvpy
 @url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.")
     (license license:bsd-2)))
 
+(define-public python-kanon
+  (package
+    (name "python-kanon")
+    (version "0.6.6")
+    (source
+     (origin
+       (method git-fetch)               ; no release in PyPI
+       (uri (git-reference
+             (url "https://github.com/ALFA-project-erc/kanon")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0sg9yrsas5xmhbw6mhfyxsxh9i060af6v02whr9fqgv687fiyrhc"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list ;"--numprocesses" "auto"
+              ;; XXX: This tests failing a lot.
+              "-k" (string-append "not test_attribute_forwardin"
+                                  " and not test_declination"
+                                  " and not test_init_basedquantity"
+                                  " and not test_ptolemy_viz"
+                                  " and not test_ptolemy_viz"
+                                  " and not test_quantity"
+                                  " and not test_read"
+                                  " and not test_shifting"
+                                  " and not test_sun_true_position"
+                                  " and not test_sun_true_position")
+              "--ignore=kanon/tables/__init__.py")
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; See <https://github.com/ALFA-project-erc/kanon/issues/149>.
+          (delete 'sanity-check)
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "pyproject.toml"
+                (("version = \"0.0.0\"") (string-append "version = \"" #$version "\""))
+                ;; RuntimeError: Unable to detect version control
+                ;; system. Checked: Git. Not installed: Mercurial, Darcs,
+                ;; Subversion, Bazaar, Fossil, Pijul.  See
+                ;; <https://github.com/blacklanternsecurity/bbot/issues/1257>.
+                (("enable = true") "enable = false"))))
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              (setenv "HOME" "/tmp"))))))
+    (native-inputs
+     (list git-minimal
+           python-poetry-core
+           python-poetry-dynamic-versioning
+           python-pytest-astropy
+           python-pytest-xdist
+           python-requests-mock))
+    (propagated-inputs
+     (list python-astropy
+           python-matplotlib
+           python-numpy
+           python-pandas-1
+           python-requests
+           python-scipy
+           ;; Optional
+           python-ipykernel
+           python-papermill))
+    (home-page "https://dishas.obspm.fr")
+    (synopsis "History of astronomy")
+    (description "This package provides a history of astronomy library.
+Current Features:
+@itemize
+@item define standard positional numeral systems with standard arithmetics
+(BasedReal)
+@item set your own precision contexts and algorithms on arithmetical
+operations (PrecisionContext)
+@item keep track of all operations
+@item build or import ancient astronomical tables
+@item perform arithmetical and statistical operations
+@item support for BasedReal values
+@item define new calendar types
+@item date conversions
+@item collection of mathematical models used for all kinds of geocentric
+astronomical tables
+@end itemize")
+    (license license:bsd-3)))
+
 (define-public python-mpl-animators
   (package
     (name "python-mpl-animators")
-- 
2.41.0

[bug#72219] [PATCH 28/34] gnu: Add python-ads.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-ads): New variable.

Change-Id: Ia4ae54c90cd77ff15c8171a992ddc1ce823557e8
---
 gnu/packages/astronomy.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index fa832ee93f..c25e49e411 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -89,6 +89,7 @@ (define-module (gnu packages astronomy)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages version-control)
   #:use-module (gnu packages video)
+  #:use-module (gnu packages web)
   #:use-module (gnu packages wxwidgets)
   #:use-module (gnu packages xiph)
   #:use-module (gnu packages xml)
@@ -677,6 +678,31 @@ (define-public psfex
 model-fitting photometry or morphological analyses.")
     (license license:gpl3+)))
 
+(define-public python-ads
+  (package
+    (name "python-ads")
+    (version "0.12.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "ads" version))
+       (sha256
+        (base32 "18aizbsmhwz99flz8n101mi0n0lk3m3qqzfvmxrmjwqvydfypjml"))))
+    (build-system pyproject-build-system)
+    (native-inputs
+     (list python-httpretty))
+    (propagated-inputs
+     (list python-mock
+           python-requests
+           python-six
+           python-werkzeug))
+    (home-page "http://www.github.com/andycasey/ads/")
+    (synopsis "Python client to NASA's Astrophysics Data System")
+    (description
+     "This package provdies a Python Module to Interact with NASA's
+@acronym{Astrophysics Data System,ADS} that Doesn't Suck™.")
+    (license license:expat)))
+
 (define-public python-aplpy
   (package
     (name "python-aplpy")
-- 
2.41.0

[bug#72219] [PATCH 29/34] gnu: Add python-sbpy.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-sbpy): New variable.

Change-Id: I456f1400ce072d3a2e4cd263349f57c5779f36c5
---
 gnu/packages/astronomy.scm | 68 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 68 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c25e49e411..307d85578f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -57,6 +57,7 @@ (define-module (gnu packages astronomy)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages image)
   #:use-module (gnu packages image-processing)
+  #:use-module (gnu packages jupyter)
   #:use-module (gnu packages libevent)
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages lua)
@@ -4641,6 +4642,73 @@ (define-public python-pysynphot
 spectra, and data.")
       (license license:bsd-3))))
 
+(define-public python-sbpy
+  (package
+    (name "python-sbpy")
+    (version "0.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "sbpy" version))
+       (sha256
+        (base32 "18f3056fgzpvjj43m845wl9znl4dqxs8f8qv3gpay7kik4l8a1fc"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; See <https://github.com/NASA-Planetary-Science/sbpy/issues/397>.
+      #~(list "--ignore=sbpy/spectroscopy/tests/test_specgrad.py"
+              ;; See <https://github.com/NASA-Planetary-Science/sbpy/issues/398>
+              "-k" (string-append "not test_from_fluxd"
+                                  " and not test_bandpass"
+                                  " and not test_spectral_density_vega_bp"))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'set-home-env
+            (lambda _
+              ;; Tests require HOME to be set.
+              ;;  No such file or directory: '/homeless-shelter/.astropy'
+              (setenv "HOME" "/tmp"))))))
+    (propagated-inputs
+     (list python-ads
+           python-astropy
+           python-astroquery
+           python-ginga
+           python-numpy
+           python-photutils
+           python-pyyaml
+           python-scipy
+           python-synphot))
+    (native-inputs
+     (list python-pytest
+           python-pytest-astropy
+           python-pytest-doctestplus
+           python-pytest-remotedata
+           python-pytest-xdist
+           python-setuptools-scm))
+    (home-page "https://sbpy.org")
+    (synopsis "Python module for small-body planetary astronomy")
+    (description
+     "@code{sbpy} is a package for small-body planetary astronomy.  It is
+meant to supplement functionality provided by @code{astropy} with functions
+and methods that are frequently used in the context of planetary astronomy
+with a clear focus on asteroids and comets.
+Features:
+@itemize
+@item observation planning tools tailored to moving objects
+@item photometry models for resolved and unresolved observations
+@item wrappers and tools for astrometry and orbit fitting
+@item spectroscopy analysis tools and models for reflected solar light and
+emission from gas
+@item cometary gas and dust coma simulation and analysis tools
+@item asteroid thermal models for flux estimation and size/albedo estimation
+@item image enhancement tools for comet comae and PSF subtraction tools
+@item lightcurve and shape analysis tools
+@item access tools for various databases for orbital and physical data, as
+well as ephemerides services
+@end itemize")
+    (license license:bsd-3)))
+
 (define-public python-sep
   (package/inherit libsep
     (name "python-sep")
-- 
2.41.0

[bug#72219] [PATCH 30/34] gnu: Add python-echo.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-echo): New variable.

Change-Id: Id506a7b4ed9681227372455f9d96a0957eb845a7
---
 gnu/packages/python-xyz.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d36c96004e..1ac9884c59 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2382,6 +2382,42 @@ (define-public python-easygui
 simple function calls.")
     (license license:bsd-3)))
 
+(define-public python-echo
+  (package
+    (name "python-echo")
+    (version "0.8.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "echo" version))
+       (sha256
+        (base32 "1hr2kgjmf5gcjbg1mry03ca1dayfwy8mi8as42jfg0apsa3bfvvj"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'start-xorg-server
+            (lambda _
+              ;; The test suite requires a running X server.
+              (system "Xvfb :99 -screen 0 1024x768x24 &")
+              (setenv "DISPLAY" ":99.0"))))))
+    (propagated-inputs
+     (list python-numpy
+           python-qtpy
+           python-pyqt-6))
+    (native-inputs
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools-scm
+           xorg-server-for-tests))
+    (home-page "https://github.com/glue-viz/echo")
+    (synopsis "Callback Properties in Python")
+    (description
+     "Echo is a small library for attaching callback functions to property
+state changes.")
+    (license license:expat)))
+
 (define-public python-pymd4c
   (package
     (name "python-pymd4c")
-- 
2.41.0

[bug#72219] [PATCH 31/34] gnu: Add python-mpl-scatter-density.

[Sharlatan Hellseher]

* gnu/packages/python-science.scm (python-mpl-scatter-density): New variable.

Change-Id: Id4ea80b2c62642affbe1944e0c5126a1c53d16c3
---
 gnu/packages/python-science.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 7012a942d3..4bb8ac342d 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -779,6 +779,37 @@ (define-public python-meshzoo
 spheres, cubes, etc.")
     (license license:gpl3+)))
 
+(define-public python-mpl-scatter-density
+  (package
+    (name "python-mpl-scatter-density")
+    (version "0.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "mpl-scatter-density" version))
+       (sha256
+        (base32 "083n4xkwjmxvij9i1xhfnxz8vk39ay0baam4nf0khvcihw47bkna"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; See <https://github.com/astrofrog/mpl-scatter-density/issues/42>.
+      #:test-flags #~(list "-k" "not test_default_dpi")))
+    (propagated-inputs
+     (list python-fast-histogram
+           python-matplotlib
+           python-numpy))
+    (native-inputs
+     (list python-pytest
+           python-pytest-cov
+           python-pytest-mpl
+           python-setuptools-scm))
+    (home-page "https://github.com/astrofrog/mpl-scatter-density")
+    (synopsis "Matplotlib helpers to make density scatter plots")
+    (description
+     "This package provides functionality to make it easy to make scatter
+density maps, both for interactive and non-interactive use.")
+    (license license:bsd-2)))
+
 (define-public python-pyamg
   (package
     (name "python-pyamg")
-- 
2.41.0

[bug#72219] [PATCH 32/34] gnu: Add python-glue-core.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-glue-core): New variable.

Change-Id: I7fde0a36e35bf30e42cc419fdf4573a3924e032d
---
 gnu/packages/astronomy.scm | 45 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 307d85578f..df9f50285f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1147,6 +1147,51 @@ (define-public ginga-qt5
        (prepend python-pyqt)))
     (synopsis "Qt5 image viewer build based on python-ginga library")))
 
+(define-public python-glue-core
+  (package
+    (name "python-glue-core")
+    (version "1.21.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "glue_core" version))
+       (sha256
+        (base32 "1xms896ds70sbym1cr5lrbjl4i8vixy3mcc6qsg1b3ppvky76vmn"))))
+    (build-system pyproject-build-system)
+    (propagated-inputs
+     (list ;; python-astrodendro ; optional, not packed
+           python-astropy
+           python-dill
+           python-echo
+           python-fast-histogram
+           python-ipython
+           python-matplotlib
+           python-mpl-scatter-density
+           python-numpy
+           python-openpyxl
+           python-pandas
+           ;; python-pyavm ; optional, not packed
+           python-scikit-image
+           python-scipy
+           python-setuptools
+           python-shapely
+           python-spectral-cube
+           python-xlrd))
+    (native-inputs
+     (list python-h5py
+           python-objgraph
+           python-pytest
+           python-pytest-cov
+           python-pytest-mpl
+           python-setuptools
+           python-setuptools-scm))
+    (home-page "http://glueviz.org")
+    (synopsis "Multidimensional data visualization project")
+    (description
+     "Glue is a python project to link visualizations of scientific datasets
+across many files.")
+    (license license:bsd-3)))
+
 (define-public wcslib
   (package
     (name "wcslib")
-- 
2.41.0

[bug#72219] [PATCH 33/34] gnu: Add python-looseversion.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-looseversion): New variable.

Change-Id: I862f10cf5c7285e171335abee429ae76140271dd
---
 gnu/packages/python-xyz.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1ac9884c59..226653cd65 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -34534,6 +34534,34 @@ (define-public python-logical-unification
 symbolic expressions in pure Python using the technique of logical unification.")
     (license license:bsd-3)))
 
+(define-public python-looseversion
+  (package
+    (name "python-looseversion")
+    (version "1.3.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "looseversion" version))
+       (sha256
+        (base32 "17k625ws83lwksa7yyy4mn0i39lmxgrzxihn22l335dvyvrnbppb"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; No tests provided.
+      #:tests? #f))
+    (native-inputs
+     (list python-hatchling))
+    (home-page "https://github.com/effigies/looseversion")
+    (synopsis "Version numbering for anarchists and software realists")
+    (description
+     "This package provides a drop-in replacement for the original
+@code{LooseVersion}.  It implements an identical interface and comparison
+logic to @code{LooseVersion}.  The only major change is that a
+@code{looseversion.LooseVersion} is comparable to a
+@code{distutils.version.LooseVersion}, which means tools should not need to
+worry whether all dependencies that use LooseVersion have migrated.")
+    (license license:psfl)))
+
 (define-public python-cons
   (package
     (name "python-cons")
-- 
2.41.0

[bug#72219] [PATCH 34/34] gnu: Add python-sncosmo.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-sncosmo): New variable.

Change-Id: I49b42a89e9bcabda1fa7193e40c5c43fbeaf1613
---
 gnu/packages/astronomy.scm | 77 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 77 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index df9f50285f..2ee206c766 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1192,6 +1192,83 @@ (define-public python-glue-core
 across many files.")
     (license license:bsd-3)))
 
+(define-public python-sncosmo
+  (package
+    (name "python-sncosmo")
+    (version "2.11.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "sncosmo" version))
+       (sha256
+        (base32 "0nmhrvaw22zxpmykl70a91mc88pxmw0x5fdxjiz3hdzkdbqrg0x9"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; Disable tests requireing remote access to download test data.
+      #~(list
+         "-k" (string-append "not test_megacampsf_bandpass"
+                             " and not test_builtins_remote_aa"
+                             " and not test_builtins_remote_nm"
+                             " and not test_builtins_remote_um"
+                             " and not test_builtins_remote_wfc3"
+                             " and not test_builtins_megacampsf"
+                             " and not test_builtins_timeseries_ascii"
+                             " and not test_builtins_timeseries_fits"
+                             " and not test_builtins_salt2model"
+                             " and not test_builtins_salt3model"
+                             " and not test_builtins_2011fe"
+                             " and not test_builtins_mlcs2k2"
+                             " and not test_builtins_snemo"
+                             " and not test_builtins_sugar"
+                             " and not test_builtins_magsys_fits"
+                             " and not test_builtins_magsys_csp"
+                             " and not test_builtins_magsys_ab_b12"
+                             " and not test_builtins_magsys_jla"
+                             " and not test_csp_magsystem"
+                             " and not test_compositemagsystem_band_error"
+                             " and not test_G10"
+                             " and not test_C11"
+                             " and not test_salt2source_timeseries_vs_snfit"
+                             " and not test_salt2source_rcov_vs_snfit"
+                             " and not test_bandflux"
+                             " and not test_bandflux_multi"
+                             " and not test_bandflux_zpsys"
+                             " and not test_bandfluxcov"
+                             " and not test_bandmag"
+                             " and not test_sugarsource"))
+      #:phases
+      #~(modify-phases %standard-phases
+         (add-after 'unpack 'relax-requirements
+           (lambda _
+             (substitute* "setup.cfg"
+               ;; pyyaml>=6.0.1
+               (("6.0.1") "6.0"))))
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              (setenv "HOME" "/tmp")
+              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+    (propagated-inputs
+     (list python-astropy
+           python-extinction
+           python-looseversion
+           python-numpy
+           python-pyyaml
+           python-scipy))
+    (native-inputs
+     (list ;; python-iminuit ; not packed, optional
+           python-cython
+           python-pytest
+           python-pytest-astropy
+           python-pytest-cov))
+    (home-page "https://sncosmo.readthedocs.org")
+    (synopsis "Package for supernova cosmology based on astropy")
+    (description
+     "SNCosmo is a Python library for supernova cosmology analysis.  It aims
+to make such analysis both as flexible and clear as possible.")
+    (license license:bsd-3)))
+
 (define-public wcslib
   (package
     (name "wcslib")
-- 
2.41.0

bug#72219: [PATCH 00/34] Astronomy update 2024/07

[Sharlatan Hellseher]

[-- Attachment #1: Type: text/plain, Size: 55 bytes --]


Pushed as b5c33f99e3...1b7d53dad7 to master.

--
Oleg

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 832 bytes --]