* [bug#73197] [PATCH] gnu: julia: Update to 1.9.3.
@ 2024-09-12 13:22 Ludovic Courtès
2024-09-16 7:50 ` Efraim Flashner
0 siblings, 1 reply; 5+ messages in thread
From: Ludovic Courtès @ 2024-09-12 13:22 UTC (permalink / raw)
To: 73197
Cc: Ludovic Courtès, Philippe Virouleau, Efraim Flashner,
Simon Tournier
From: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu/packages/julia.scm (julia): Update to 1.9.3.
[arguments]: Use gexps.
[inputs, native-inputs]: Remove labels.
* gnu/packages/llvm.scm (llvm-julia): Rename to…
(llvm-14-julia): … this. Upgrade to 14.0.6-3.
* gnu/packages/patches/julia-1.9-build-tweaks.patch: New file.
* gnu/packages/patches/julia-Use-MPFR-4.2.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
Co-authored-by: Philippe Virouleau <philippe.virouleau@inria.fr>
Change-Id: I6ef35c6cd31741a7725b50364dd0f8fa6a0c6424
---
gnu/local.mk | 2 +-
gnu/packages/julia.scm | 862 ++++++++++--------
gnu/packages/llvm.scm | 38 +-
.../patches/julia-1.9-build-tweaks.patch | 152 +++
gnu/packages/patches/julia-Use-MPFR-4.2.patch | 228 -----
5 files changed, 651 insertions(+), 631 deletions(-)
create mode 100644 gnu/packages/patches/julia-1.9-build-tweaks.patch
delete mode 100644 gnu/packages/patches/julia-Use-MPFR-4.2.patch
Hello comrades!
Here is an update of Julia adapted from:
https://gitlab.inria.fr/guix-hpc/guix-hpc/-/commit/eb83e466fe0b9492216abc46da26ec3a89b0a946
Version 1.9.3 has been in the guix-hpc channel for a while. It’s not
the latest version, not even the latest series, but it’s an improvement
over what we have.
Thoughts?
Ludo’.
diff --git a/gnu/local.mk b/gnu/local.mk
index ed630041ff..76d58c8e38 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1586,8 +1586,8 @@ dist_patch_DATA = \
%D%/packages/patches/john-the-ripper-jumbo-with-gcc-11.patch \
%D%/packages/patches/json-c-0.13-CVE-2020-12762.patch \
%D%/packages/patches/json-c-0.12-CVE-2020-12762.patch \
+ %D%/packages/patches/julia-1.9-build-tweaks.patch \
%D%/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch \
- %D%/packages/patches/julia-Use-MPFR-4.2.patch \
%D%/packages/patches/libcall-ui-make-it-installable.patch \
%D%/packages/patches/libcamera-ipa_manager-disable-signature-verification.patch \
%D%/packages/patches/libcss-check-format.patch \
diff --git a/gnu/packages/julia.scm b/gnu/packages/julia.scm
index 9668b3fd1e..5c7d900a09 100644
--- a/gnu/packages/julia.scm
+++ b/gnu/packages/julia.scm
@@ -28,6 +28,7 @@ (define-module (gnu packages julia)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
@@ -142,412 +143,493 @@ (define-public libwhich
(define-public julia
(package
(name "julia")
- (version "1.8.3")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/JuliaLang/julia/releases/download/v"
- version "/julia-" version ".tar.gz"))
- (sha256
- (base32
- "0jf8dr5j7y8cjnr65kn38xps5h9m2qvi8g1yd8qgiip5r87ld3ad"))
- (patches (search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch"
- "julia-Use-MPFR-4.2.patch"))))
+ (version "1.9.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/JuliaLang/julia/releases/download/v" version
+ "/julia-" version ".tar.gz"))
+ (sha256
+ (base32 "0788hbcr1v89crv2j3insy89lxs0zwjbxk9q73jpj4g7j26bszcd"))
+ (patches (search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch"
+ "julia-1.9-build-tweaks.patch"))))
(build-system gnu-build-system)
(arguments
- `(#:test-target "test"
- #:modules ((ice-9 match)
- (guix build gnu-build-system)
- (guix build utils))
+ (list #:test-target "test"
+ #:modules `((ice-9 match)
+ (guix build gnu-build-system)
+ (guix build utils))
- ;; The test suite takes many times longer than building and
- ;; can easily fail on smaller machines when they run out of memory.
- #:tests? ,(not (or (%current-target-system)
- (target-aarch64?)))
+ ;; The test suite takes many times longer than building and
+ ;; can easily fail on smaller machines when they run out of memory.
+ #:tests? (not (or (%current-target-system)
+ (target-aarch64?)))
- ;; Do not strip binaries to keep support for full backtraces.
- ;; See https://github.com/JuliaLang/julia/issues/17831
- #:strip-binaries? #f
+ ;; Do not strip binaries to keep support for full backtraces.
+ ;; See https://github.com/JuliaLang/julia/issues/17831
+ #:strip-binaries? #f
- ;; The DSOs use $ORIGIN to refer to each other, but (guix build
- ;; gremlin) doesn't support it yet, so skip this phase.
- #:validate-runpath? #f
+ ;; The DSOs use $ORIGIN to refer to each other, but (guix build
+ ;; gremlin) doesn't support it yet, so skip this phase.
+ #:validate-runpath? #f
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-after 'unpack 'prepare-deps
- (lambda* (#:key inputs #:allow-other-keys)
- ;; needed by libwhich
- (setenv "LD_LIBRARY_PATH"
- (string-join (map (lambda (pkg)
- (string-append (assoc-ref inputs pkg)
- "/lib"))
- '("curl" "dsfmt"
- "gmp" "lapack"
- "libssh2" "libnghttp2" "libgit2"
- "libblastrampoline"
- "mbedtls" "mpfr"
- "openblas" "openlibm" "pcre2"
- "suitesparse" "gfortran:lib"))
- ":"))))
- ;; FIXME: Building the documentation requires Julia packages that
- ;; would be downloaded from the Internet. We should build them in a
- ;; separate build phase.
- (add-after 'unpack 'disable-documentation
- (lambda _
- (substitute* "Makefile"
- (("(install: .*) \\$\\(BUILDROOT\\)/doc/_build/html/en/index.html" _ line)
- (string-append line "\n"))
- (("src ui doc deps")
- "src ui deps"))))
- (add-after 'unpack 'activate-gnu-source-for-loader
- (lambda _
- (substitute* "cli/Makefile"
- (("LOADER_CFLAGS =") "LOADER_CFLAGS = -D_GNU_SOURCE"))))
- ;; libquadmath is not available on all architectures.
- ;; https://github.com/JuliaLang/julia/issues/41613
- (add-after 'unpack 'make-libquadmath-optional
- (lambda _
- (substitute* "base/Makefile"
- (("libquadmath,0") "libquadmath,0,ALLOW_FAILURE"))))
- (add-before 'check 'set-home
- ;; Some tests require a home directory to be set.
- (lambda _ (setenv "HOME" "/tmp")))
- (add-before 'build 'fix-include-and-link-paths
- (lambda* (#:key inputs #:allow-other-keys)
- ;; The REPL must be linked with libuv.
- (substitute* "cli/Makefile"
- (("JLDFLAGS \\+= ")
- (string-append "JLDFLAGS += "
- (assoc-ref inputs "libuv")
- "/lib/libuv.so ")))))
- (add-before 'build 'replace-default-shell
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "base/client.jl"
- (("/bin/sh") (search-input-file inputs "/bin/sh")))))
- (add-before 'build 'shared-objects-paths
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((jlpath
- (lambda (pkgname)
- (string-append
- "stdlib/" pkgname "_jll/src/" pkgname "_jll.jl")))
- (from
- (lambda (libname)
- (string-append "const " libname " = .*\\.so")))
- (to
- (lambda* (pkg libname #:optional libname_jl)
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (add-after 'unpack 'prepare-deps
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; needed by libwhich
+ (match inputs
+ (((labels . directories) ...)
+ (set-path-environment-variable
+ "LD_LIBRARY_PATH"
+ '("lib") directories)))))
+ (add-before 'check 'set-home
+ ;; Some tests require a home directory to be set.
+ (lambda _
+ (setenv "HOME" "/tmp")))
+ (add-before 'build 'fix-include-and-link-paths
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; The REPL must be linked with libuv.
+ (substitute* "cli/Makefile"
+ (("JLDFLAGS \\+= ")
+ (string-append "JLDFLAGS += "
+ (search-input-file inputs
+ "/lib/libuv.so") " ")))))
+ (add-before 'build 'fix-nested-dlopen
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "Make.inc"
+ ;; See the patch comment for the explanation, *must* be updated
+ ;; when updating julia.
+ (("GUIX_LIBUTF8PROC")
+ (search-input-file inputs "/lib/libutf8proc.a")))
+ (substitute* "Makefile"
+ ;; See the patch comment for the explanation, *must* be updated
+ ;; when updating julia.
+ (("GUIX_LIBCHOLMOD")
+ (search-input-file inputs "/lib/libcholmod.so"))
+ (("GUIX_LIBSPQR")
+ (search-input-file inputs "/lib/libspqr.so"))
+ (("GUIX_LIBSC")
+ (search-input-file inputs
+ "/lib/libsuitesparseconfig.so"))
+ (("GUIX_LIBUMFPACK")
+ (search-input-file inputs "/lib/libumfpack.so")))))
+ (add-before 'build 'replace-default-shell
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "base/client.jl"
+ (("/bin/sh")
+ (search-input-file inputs "/bin/sh")))))
+ (add-before 'build 'shared-objects-paths
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((jlpath (lambda (pkgname)
+ (string-append "stdlib/" pkgname
+ "_jll/src/" pkgname
+ "_jll.jl")))
+ (jlbasepath (lambda (pkgname)
+ (string-append "base/" pkgname
+ ".jl")))
+ (tolib (lambda (libname)
+ (search-input-file inputs
+ (string-append
+ "/lib/" libname
+ ".so"))))
+ (toquotedlib (lambda (libname)
+ (define file
+ (string-append "/lib/"
+ libname
+ ".so"))
+ (string-append "\""
+ (search-input-file
+ inputs file)
+ "\"")))
+ (from (lambda (libname)
+ (string-append "const " libname
+ " = .*\\.so")))
+ (to (lambda* (libname #:optional libname_jl)
+ (define file
+ (string-append "/lib/" libname ".so"))
+
+ (string-append "const "
+ (or libname_jl libname)
+ " = \""
+ (search-input-file
+ inputs file)))))
+ (substitute* "src/jitlayers.cpp"
+ (("libatomic.so")
+ (search-input-file inputs "/lib/libatomic.so")))
+ (substitute* (list (jlbasepath "linking")
+ (jlpath "LLD"))
+ (("\"lld\"")
+ (string-append "\""
+ (search-input-file inputs
+ "/bin/lld")
+ "\"")))
+ (substitute* (jlbasepath "pcre")
+ (("libpcre2-8")
+ (tolib "libpcre2-8")))
+ (substitute* (jlbasepath "gmp")
+ (("libgmp.so.10")
+ (tolib "libgmp")))
+ (substitute* (jlbasepath "mpfr")
+ (("libmpfr.so.6")
+ (tolib "libmpfr")))
+ (substitute* (jlbasepath "irrationals")
+ ((":libmpfr")
+ (toquotedlib "libmpfr")))
+ (substitute* "stdlib/Random/src/generation.jl"
+ ((":libmpfr")
+ (toquotedlib "libmpfr")))
+ (substitute* "stdlib/Printf/src/Printf.jl"
+ (("\"libmpfr\"")
+ (toquotedlib "libmpfr")))
+ (substitute* "stdlib/Random/src/DSFMT.jl"
+ ((":libdSFMT")
+ (toquotedlib "libdSFMT")))
+ (for-each (lambda (file)
+ (substitute* file
+ ((":libgit2")
+ (toquotedlib "libgit2"))))
+ (find-files "stdlib/LibGit2/" "\\.jl$"))
+ (substitute* (jlpath "CompilerSupportLibraries")
+ (((from "libgomp"))
+ (to "libgomp"))
+ (((from "libgfortran"))
+ (string-append
+ "const libgfortran = string(\""
+ (search-input-file inputs
+ "/lib/libgfortran.so"))))
+ (substitute* (jlpath "dSFMT")
+ (((from "libdSFMT"))
+ (to "libdSFMT")))
+ (substitute* (jlpath "GMP")
+ (((from "libgmp"))
+ (to "libgmp"))
+ (((from "libgmpxx"))
+ (to "libgmpxx")))
+ (substitute* (jlpath "libLLVM")
+ (((from "libLLVM"))
+ (to "libLLVM")))
+ (substitute* (jlbasepath "binaryplatforms")
+ (("libLLVM-14jl")
+ (tolib "libLLVM-14jl")))
+ (substitute* (jlpath "LibCURL")
+ (((from "libcurl"))
+ (to "libcurl")))
+ (substitute* (jlpath "LibGit2")
+ (((from "libgit2"))
+ (to "libgit2")))
+ (substitute* (jlpath "LibSSH2")
+ (((from "libssh2"))
+ (to "libssh2")))
+ (substitute* (jlpath "LibUV")
+ (((from "libuv"))
+ (to "libuv")))
+ (substitute* (jlpath "LibUnwind")
+ (((from "libunwind"))
+ (to "libunwind")))
+ (substitute* (jlpath "MPFR")
+ (((from "libmpfr"))
+ (to "libmpfr")))
+ (substitute* (jlpath "MbedTLS")
+ (((from "libmbedcrypto"))
+ (to "libmbedcrypto"))
+ (((from "libmbedtls"))
+ (to "libmbedtls"))
+ (((from "libmbedx509"))
+ (to "libmbedx509")))
+ (substitute* (jlpath "nghttp2")
+ (((from "libnghttp2"))
+ (to "libnghttp2")))
+ (substitute* (jlpath "OpenBLAS")
+ (("libgfortran.so")
+ (tolib "libgfortran"))
+ (((from "libopenblas"))
+ #$@(if (target-x86-64?)
+ `((to "libopenblas64_" "libopenblas"))
+ `((to "libopenblas")))))
+ (substitute* (jlpath "OpenLibm")
+ (((from "libopenlibm"))
+ (to "libopenlibm")))
+ (substitute* (jlpath "PCRE2")
+ (((from "libpcre2_8"))
+ (to "libpcre2-8" "libpcre2_8")))
+ (substitute* (jlpath "SuiteSparse")
+ (((from "libamd"))
+ (to "libamd"))
+ (((from "libbtf"))
+ (to "libbtf"))
+ (((from "libcamd"))
+ (to "libcamd"))
+ (((from "libccolamd"))
+ (to "libccolamd"))
+ (((from "libcholmod"))
+ (to "libcholmod"))
+ (((from "libcolamd"))
+ (to "libcolamd"))
+ (((from "libklu"))
+ (to "libklu"))
+ (((from "libldl"))
+ (to "libldl"))
+ (((from "librbio"))
+ (to "librbio"))
+ (((from "libspqr"))
+ (to "libspqr"))
+ (((from "libsuitesparse"))
+ (to "libsuitesparse"))
+ (((from "libsuitesparseconfig"))
+ (to "libsuitesparseconfig"))
+ (((from "libumfpack"))
+ (to "libumfpack")))
+ (substitute* (jlpath "Zlib")
+ (((from "libz"))
+ (to "libz")))
+ (substitute* (jlpath "libblastrampoline")
+ (("libblastrampoline\\.so")
+ (search-input-file inputs
+ "/lib/libblastrampoline.so"))))))
+ (add-before 'build 'use-ssl-cert-file
+ (lambda _
+ ;; We must adapt MozillaCACerts to use SSL_CERT_FILE.
+ (substitute* "stdlib/MozillaCACerts_jll/src/MozillaCACerts_jll.jl"
+ (("global cacert = .*")
(string-append
- "const " (or libname_jl libname) " = \""
- (assoc-ref inputs pkg) "/lib/" libname ".so"))))
- (substitute* (jlpath "CompilerSupportLibraries")
- (((from "libgfortran"))
- (string-append "const libgfortran = string(\""
- (search-input-file inputs "/lib/libgfortran.so"))))
- (substitute* (jlpath "dSFMT")
- (((from "libdSFMT")) (to "dsfmt" "libdSFMT")))
- (substitute* (jlpath "GMP")
- (((from "libgmp")) (to "gmp" "libgmp"))
- (((from "libgmpxx")) (to "gmp" "libgmpxx")))
- (substitute* (jlpath "libLLVM")
- (((from "libLLVM")) (to "llvm" "libLLVM")))
- (substitute* (jlpath "LibCURL")
- (((from "libcurl")) (to "curl" "libcurl")))
- (substitute* (jlpath "LibGit2")
- (((from "libgit2")) (to "libgit2" "libgit2")))
- (substitute* (jlpath "LibSSH2")
- (((from "libssh2")) (to "libssh2" "libssh2")))
- (substitute* (jlpath "LibUV")
- (((from "libuv")) (to "libuv" "libuv")))
- (substitute* (jlpath "LibUnwind")
- (((from "libunwind")) (to "libunwind" "libunwind")))
- (substitute* (jlpath "MPFR")
- (((from "libmpfr")) (to "mpfr" "libmpfr")))
- (substitute* (jlpath "MbedTLS")
- (((from "libmbedcrypto")) (to "mbedtls" "libmbedcrypto"))
- (((from "libmbedtls")) (to "mbedtls" "libmbedtls"))
- (((from "libmbedx509")) (to "mbedtls" "libmbedx509")))
- (substitute* (jlpath "nghttp2")
- (((from "libnghttp2")) (to "libnghttp2" "libnghttp2")))
- (substitute* (jlpath "OpenBLAS")
- (((from "libopenblas"))
- ,@(if (target-x86-64?)
- `((to "openblas" "libopenblas64_" "libopenblas"))
- `((to "openblas" "libopenblas")))))
- (substitute* (jlpath "OpenLibm")
- (((from "libopenlibm")) (to "openlibm" "libopenlibm")))
- (substitute* (jlpath "PCRE2")
- (((from "libpcre2_8")) (to "pcre2" "libpcre2-8" "libpcre2_8")))
- (substitute* (jlpath "SuiteSparse")
- (((from "libamd")) (to "suitesparse" "libamd"))
- (((from "libbtf")) (to "suitesparse" "libbtf"))
- (((from "libcamd")) (to "suitesparse" "libcamd"))
- (((from "libccolamd")) (to "suitesparse" "libccolamd"))
- (((from "libcholmod")) (to "suitesparse" "libcholmod"))
- (((from "libcolamd")) (to "suitesparse" "libcolamd"))
- (((from "libklu")) (to "suitesparse" "libklu"))
- (((from "libldl")) (to "suitesparse" "libldl"))
- (((from "librbio")) (to "suitesparse" "librbio"))
- (((from "libspqr")) (to "suitesparse" "libspqr"))
- (((from "libsuitesparse")) (to "suitesparse" "libsuitesparse"))
- (((from "libsuitesparseconfig"))
- (to "suitesparse" "libsuitesparseconfig"))
- (((from "libumfpack")) (to "suitesparse" "libumfpack")))
- (substitute* (jlpath "Zlib")
- (((from "libz")) (to "zlib" "libz")))
- (substitute* (jlpath "libblastrampoline")
- (("libblastrampoline\\.so")
- (search-input-file inputs "/lib/libblastrampoline.so"))))))
- (add-before 'build 'use-ssl-cert-file
- (lambda _
- ;; We must adapt MozillaCACerts to use SSL_CERT_FILE.
- (substitute* "stdlib/MozillaCACerts_jll/src/MozillaCACerts_jll.jl"
- (("global cacert = .*")
- (string-append
- "global cacert = get(ENV, \"SSL_CERT_FILE\","
- ;; our fallback location.
- "\"/etc/ssl/certs/ca-certificates.crt\")\n")))))
- (add-after 'unpack 'enable-parallel-tests
- (lambda* (#:key parallel-tests? #:allow-other-keys)
- (when parallel-tests?
- (setenv "JULIA_TEST_USE_MULTIPLE_WORKERS" "true"))))
- (add-after 'unpack 'adjust-test-suite
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "test/spawn.jl"
- (("shcmd = `sh`") (string-append "shcmd = `" (which "sh") "`")))
- ;; Some tests only check to see if the input is the correct version.
- (substitute* "stdlib/PCRE2_jll/test/runtests.jl"
- (("10.40.0") ,(package-version (this-package-input "pcre2"))))
- (substitute* "stdlib/MbedTLS_jll/test/runtests.jl"
- (("2.28.0") ,(package-version (this-package-input "mbedtls"))))
- (substitute* "stdlib/MPFR_jll/test/runtests.jl"
- (("4.1.0") ,(package-version (this-package-input "mpfr"))))
- (substitute* "stdlib/GMP_jll/test/runtests.jl"
- (("6.2.1") ,(package-version (this-package-input "gmp"))))
- (substitute* "stdlib/LibGit2_jll/test/runtests.jl"
- (("1.3.0") ,(package-version (this-package-input "libgit2"))))
- (substitute* "stdlib/nghttp2_jll/test/runtests.jl"
- (("1.48.0") ,(package-version (this-package-input "libnghttp2"))))
- (substitute* "stdlib/Zlib_jll/test/runtests.jl"
- (("1.2.12") ,(package-version (this-package-input "zlib"))))
- (substitute* "stdlib/SuiteSparse_jll/test/runtests.jl"
- (("5010") ,(string-replace-substring
- (version-major+minor
- (package-version
- (this-package-input "suitesparse"))) "." "0")))))
- (add-before 'check 'disable-broken-tests
- (lambda _
- ;; disabling REPL tests because they require a stdin
- ;; There are some read-only precompile issues in the 1.6 series.
- ;; https://github.com/JuliaLang/julia/pull/41614
- ;; https://github.com/JuliaLang/julia/issues/41156
- (substitute* "test/choosetests.jl"
- (("\"cmdlineargs\",") "")
- (("\"precompile\",") ""))
- ;; Dates/io tests fail on master when networking is unavailable
- ;; https://github.com/JuliaLang/julia/issues/34655
- (substitute* "stdlib/Dates/test/io.jl"
- (("using Dates") "import Dates
+ "global cacert = get(ENV, \"SSL_CERT_FILE\","
+ ;; our fallback location.
+ "\"/etc/ssl/certs/ca-certificates.crt\")\n")))))
+ (add-after 'unpack 'enable-parallel-tests
+ (lambda* (#:key parallel-tests? #:allow-other-keys)
+ (when parallel-tests?
+ (setenv "JULIA_TEST_USE_MULTIPLE_WORKERS" "true"))))
+ (add-after 'unpack 'adjust-test-suite
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "test/spawn.jl"
+ (("shcmd = `sh`")
+ (string-append "shcmd = `"
+ (which "sh") "`")))
+
+ ;; Some tests only check to see if the input is the correct version.
+ (substitute* "stdlib/PCRE2_jll/test/runtests.jl"
+ (("10\\.42\\.0")
+ #$(package-version (this-package-input "pcre2"))))
+ (substitute* "stdlib/MbedTLS_jll/test/runtests.jl"
+ (("2\\.28\\.2")
+ #$(package-version (this-package-input "mbedtls-apache"))))
+ (substitute* "stdlib/MPFR_jll/test/runtests.jl"
+ (("4\\.1\\.1")
+ #$(package-version (this-package-input "mpfr"))))
+ (substitute* "stdlib/GMP_jll/test/runtests.jl"
+ (("6\\.2\\.1")
+ #$(package-version (this-package-input "gmp"))))
+ (substitute* "stdlib/LibGit2_jll/test/runtests.jl"
+ (("1\\.5\\.0")
+ #$(package-version (this-package-input "libgit2"))))
+ (substitute* "stdlib/nghttp2_jll/test/runtests.jl"
+ (("1\\.48\\.0")
+ #$(package-version (this-package-input "nghttp2"))))
+ (substitute* "stdlib/Zlib_jll/test/runtests.jl"
+ (("1\\.2\\.13")
+ #$(package-version (this-package-input "zlib"))))
+ (substitute* "stdlib/SuiteSparse_jll/test/runtests.jl"
+ (("5010")
+ #$(string-replace-substring
+ (version-major+minor
+ (package-version
+ (this-package-input "suitesparse"))) "." "0")))))
+ (add-before 'check 'disable-broken-tests
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; disabling REPL tests because they require a stdin
+ ;; There are some read-only precompile issues in the 1.6 series.
+ ;; https://github.com/JuliaLang/julia/pull/41614
+ ;; https://github.com/JuliaLang/julia/issues/41156
+ (substitute* "test/choosetests.jl"
+ (("\"cmdlineargs\",")
+ "")
+ (("\"precompile\",")
+ ""))
+ ;; Distributed test with remote execution
+ (substitute* "usr/share/julia/stdlib/v1.9/Distributed/test/distributed_exec.jl"
+ (("using Test,")
+ "exit()\n"))
+ ;; Dates/io tests fail on master when networking is unavailable
+ ;; https://github.com/JuliaLang/julia/issues/34655
+ (substitute* "stdlib/Dates/test/io.jl"
+ (("using Dates")
+ "import Dates
using Dates: @dateformat_str, Date, DateTime, DateFormat, Time"))
- ;; julia embeds a certificate, we are not doing that
- (substitute* "stdlib/MozillaCACerts_jll/test/runtests.jl"
- (("@test isfile\\(MozillaCACerts_jll.cacert\\)")
- "@test_broken isfile(MozillaCACerts_jll.cacert)"))
- ;; since certificate is not present some tests are failing in network option
- (substitute* "usr/share/julia/stdlib/v1.8/NetworkOptions/test/runtests.jl"
- (("@test isfile\\(bundled_ca_roots\\(\\)\\)")
- "@test_broken isfile(bundled_ca_roots())")
- (("@test ispath\\(ca_roots_path\\(\\)\\)")
- "@test_broken ispath(ca_roots_path())")
- (("@test ca_roots_path\\(\\) \\!= bundled_ca_roots\\(\\)")
- "@test_broken ca_roots_path() != bundled_ca_roots()"))
- ;; WARNING: failed to select UTF-8 encoding, using ASCII
- ;; Using 'setlocale' doesn't affect the test failures.
- ;(setlocale LC_ALL "en_US.utf8")
- ;(setenv "LC_ALL" "en_US.utf8")
- (substitute* "test/cmdlineargs.jl"
- (("test v\\[3") "test_broken v[3")
- (("test isempty\\(v\\[3") "test_broken isempty(v[3"))
- ;; These test(s) randomly fails because they depend on CPU.
- (substitute* "test/math.jl"
- ;; @test_broken cannot be used because if the test randomly
- ;; passes, then it also raises an error.
- (("@test isinf\\(log1p\\(-one\\(T\\)\\)\\)")
- " "))
+ ;; julia embeds a certificate, we are not doing that
+ (substitute* "stdlib/MozillaCACerts_jll/test/runtests.jl"
+ (("@test isfile\\(MozillaCACerts_jll.cacert\\)")
+ "@test_broken isfile(MozillaCACerts_jll.cacert)"))
+ ;; since certificate is not present some tests are failing in network option
+ (substitute* "usr/share/julia/stdlib/v1.9/NetworkOptions/test/runtests.jl"
+ (("@test isfile\\(bundled_ca_roots\\(\\)\\)")
+ "@test_broken isfile(bundled_ca_roots())")
+ (("@test ispath\\(ca_roots_path\\(\\)\\)")
+ "@test_broken ispath(ca_roots_path())")
+ (("@test ca_roots_path\\(\\) \\!= bundled_ca_roots\\(\\)")
+ "@test_broken ca_roots_path() != bundled_ca_roots()"))
+ ;; WARNING: failed to select UTF-8 encoding, using ASCII
+ ;; Using 'setlocale' doesn't affect the test failures.
+ ;; (setlocale LC_ALL "en_US.utf8")
+ ;; (setenv "LC_ALL" "en_US.utf8")
+ (substitute* "test/cmdlineargs.jl"
+ (("test v\\[3")
+ "test_broken v[3")
+ (("test isempty\\(v\\[3")
+ "test_broken isempty(v[3"))
+ ;; These test(s) randomly fails because they depend on CPU.
+ (substitute* "test/math.jl"
+ ;; @test_broken cannot be used because if the test randomly
+ ;; passes, then it also raises an error.
+ (("@test isinf\\(log1p\\(-one\\(T\\)\\)\\)")
+ " "))
- ;; These are new test failures for 1.8:
- ;; This test passes on some architectures and fails on others.
- (substitute* "stdlib/LinearAlgebra/test/lu.jl"
- (("@test String") "@test_skip String"))
+ ;; These are new test failures for 1.8:
+ ;; This test passes on some architectures and fails on others.
+ (substitute* "stdlib/LinearAlgebra/test/lu.jl"
+ (("@test String")
+ "@test_skip String"))
- (substitute* "stdlib/InteractiveUtils/test/runtests.jl"
- (("@test !occursin\\(\"Environment")
- "@test_broken !occursin(\"Environment")
- (("@test occursin\\(\"Environment")
- "@test_broken occursin(\"Environment"))
- (substitute* "usr/share/julia/stdlib/v1.8/Statistics/test/runtests.jl"
- (("@test cov\\(A") "@test_skip cov(A")
- (("@test isfinite") "@test_skip isfinite"))
- ;; LoadError: SuiteSparse threads test failed with nthreads == 4
- (substitute* "usr/share/julia/stdlib/v1.8/SuiteSparse/test/runtests.jl"
- (("Base\\.USE_GPL_LIBS") "false"))
- ;; Got exception outside of a @test
- ;; LinearAlgebra.LAPACKException(16)
- ;; eliminate all the test bits.
- (substitute* "stdlib/LinearAlgebra/test/schur.jl"
- (("f = schur\\(A, B\\)") "f = schur(A, A)")
- (("@test f\\.Q\\*f\\.S\\*f\\.Z'.*") "\n")
- (("@test f\\.Q\\*f\\.T\\*f\\.Z'.*") "\n"))
- (substitute* "test/threads.jl"
- (("@test success") "@test_broken success"))))
- ;; Doesn't this just mean they weren't linked correctly?
- (add-after 'install 'symlink-missing-libraries
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (link
- (lambda (pkgname pred)
- (map (lambda (file)
- (unless (file-exists?
- (string-append out "/lib/julia/"
- (basename file)))
- (symlink file (string-append out "/lib/julia/"
- (basename file)))))
- (find-files (string-append (assoc-ref inputs pkgname)
- "/lib") pred)))))
- (link "libunwind" "libunwind\\.so")
- (link "llvm" "libLLVM-13jl\\.so")
- (link "utf8proc" "libutf8proc\\.so")
- (link "zlib" "libz\\.so"))))
- (add-after 'install 'make-wrapper
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (bin (string-append out "/bin"))
- (program "julia"))
- (with-directory-excursion bin
- (wrap-program program
- `("JULIA_LOAD_PATH" ":" prefix
- ("" "$JULIA_LOAD_PATH"))
- `("JULIA_DEPOT_PATH" ":" prefix
- ("" "$JULIA_DEPOT_PATH"))))))))
- #:make-flags
- (list
- "VERBOSE=1" ;; more helpful logging of what make is doing
- (string-append "prefix=" (assoc-ref %outputs "out"))
+ (substitute* "usr/share/julia/stdlib/v1.9/Statistics/test/runtests.jl"
+ (("@test cov\\(A")
+ "@test_skip cov(A")
+ (("@test isfinite")
+ "@test_skip isfinite"))
+ ;; LoadError: SuiteSparse threads test failed with nthreads == 4
+ (substitute* "usr/share/julia/stdlib/v1.9/SuiteSparse/test/runtests.jl"
+ (("Base\\.USE_GPL_LIBS")
+ "false"))
+ ;; Got exception outside of a @test
+ ;; LinearAlgebra.LAPACKException(16)
+ ;; eliminate all the test bits.
+ (substitute* "stdlib/LinearAlgebra/test/schur.jl"
+ (("f = schur\\(A, B\\)")
+ "f = schur(A, A)")
+ (("@test f\\.Q\\*f\\.S\\*f\\.Z'.*")
+ "\n")
+ (("@test f\\.Q\\*f\\.T\\*f\\.Z'.*")
+ "\n"))))
+ ;; Doesn't this just mean they weren't linked correctly?
+ (add-after 'install 'symlink-missing-libraries
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (link (lambda (pkgname pred)
+ (map (lambda (file)
+ (unless (file-exists? (string-append
+ out
+ "/lib/julia/"
+ (basename
+ file)))
+ (symlink file
+ (string-append
+ out
+ "/lib/julia/"
+ (basename file)))))
+ (find-files (string-append (assoc-ref
+ inputs
+ pkgname)
+ "/lib") pred)))))
+ (link "libunwind-julia" "libunwind\\.so")
+ (link "llvm" "libLLVM-14jl\\.so")
+ (link "gmp" "libgmp\\.so.10")
+ (link "mpfr" "libmpfr\\.so.6")
+ (link "zlib" "libz\\.so"))))
+ (add-after 'install 'make-wrapper
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin"))
+ (program "julia"))
+ (with-directory-excursion bin
+ (wrap-program program
+ `("JULIA_LOAD_PATH" ":" prefix
+ ("" "$JULIA_LOAD_PATH"))
+ `("JULIA_DEPOT_PATH" ":" prefix
+ ("" "$JULIA_DEPOT_PATH"))))))))
- ;; Passing the MARCH or JULIA_CPU_TARGET flag is necessary to build
- ;; binary substitutes for the supported architectures. See also
- ;; https://docs.julialang.org/en/v1/devdocs/sysimg/#Specifying-multiple-system-image-targets
- ,(match (or (%current-target-system)
- (%current-system))
- ("x86_64-linux"
- ;; These are the flags that upstream uses for their binaries.
- "JULIA_CPU_TARGET=generic;generic,-cx16,clone_all;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1)")
- ("i686-linux" "MARCH=pentium4")
- ("armhf-linux" "JULIA_CPU_TARGET=armv7-a,neon")
- ("powerpc64le-linux" "JULIA_CPU_TARGET=pwr8")
- ;; Prevent errors when querying this package on unsupported
- ;; platforms, e.g. when running "guix package --search="
- ;; and also of targeting the builder's architecture.
- (_ "JULIA_CPU_TARGET=generic"))
+ #:make-flags
+ #~(list (string-append "prefix="
+ (assoc-ref %outputs "out"))
- "CONFIG_SHELL=bash -x" ; needed to build bundled libraries
- "USE_BINARYBUILDER=0"
- ;; list (and order!) of "USE_SYSTEM_*" is here:
- ;; https://github.com/JuliaLang/julia/blob/v1.8.2/Make.inc
- "USE_SYSTEM_CSL=1"
- "USE_SYSTEM_LLVM=1"
- "USE_SYSTEM_LIBUNWIND=1"
- "USE_SYSTEM_PCRE=1"
- "USE_SYSTEM_OPENLIBM=1"
- "USE_SYSTEM_DSFMT=1"
- "USE_SYSTEM_LIBBLASTRAMPOLINE=1"
- "USE_SYSTEM_BLAS=1"
- "USE_SYSTEM_LAPACK=1"
- "USE_SYSTEM_GMP=1"
- "USE_SYSTEM_MPFR=1"
- "USE_SYSTEM_LIBSUITESPARSE=1"
- "USE_SYSTEM_LIBUV=1"
- "USE_SYSTEM_UTF8PROC=1"
- "USE_SYSTEM_MBEDTLS=1"
- "USE_SYSTEM_LIBSSH2=1"
- "USE_SYSTEM_NGHTTP2=1"
- "USE_SYSTEM_CURL=1"
- "USE_SYSTEM_LIBGIT2=1"
- "USE_SYSTEM_PATCHELF=1"
- "USE_SYSTEM_LIBWHICH=1"
- "USE_SYSTEM_ZLIB=1"
- "USE_SYSTEM_P7ZIP=1"
+ ;; Passing the MARCH or JULIA_CPU_TARGET flag is necessary to build
+ ;; binary substitutes for the supported architectures. See also
+ ;; https://docs.julialang.org/en/v1/devdocs/sysimg/#Specifying-multiple-system-image-targets
+ #$(match (or (%current-target-system)
+ (%current-system))
+ ("x86_64-linux"
+ ;; These are the flags that upstream uses for their binaries.
+ "JULIA_CPU_TARGET=generic;generic,-cx16,clone_all;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1)")
+ ("i686-linux" "MARCH=pentium4")
+ ("armhf-linux"
+ "JULIA_CPU_TARGET=armv7-a,neon")
+ ("powerpc64le-linux"
+ "JULIA_CPU_TARGET=pwr8")
+ ;; Prevent errors when querying this package on unsupported
+ ;; platforms, e.g. when running "guix package --search="
+ ;; and also of targeting the builder's architecture.
+ (_ "JULIA_CPU_TARGET=generic"))
- "USE_LLVM_SHLIB=1"
+ "CONFIG_SHELL=bash -x" ;needed to build bundled libraries
+ (string-append "CC="
+ #$(cc-for-target))
- "NO_GIT=1" ; build from release tarball.
- "USE_GPL_LIBS=1" ; proudly
+ #$@(if (target-x86-64?)
+ `("USE_BLAS64=1"
+ "LIBBLAS=-lopenblas64_"
+ "LIBBLASNAME=libopenblas64_")
+ `("USE_BLAS64=0" "LIBBLAS=-lopenblas"
+ "LIBBLASNAME=libopenblas"))
- ,@(if (target-x86-64?)
- `("USE_BLAS64=1"
- "LIBBLAS=-lopenblas64_"
- "LIBBLASNAME=libopenblas64_")
- `("USE_BLAS64=0"
- "LIBBLAS=-lopenblas"
- "LIBBLASNAME=libopenblas"))
-
- (string-append "UTF8PROC_INC="
- (assoc-ref %build-inputs "utf8proc")
- "/include")
- ;; Make.inc expects a static library for libuv.
- (string-append "LIBUV="
- (assoc-ref %build-inputs "libuv")
- "/lib/libuv.a")
- (string-append "LIBUV_INC="
- (assoc-ref %build-inputs "libuv")
- "/include"))))
- (inputs
- `(("bash-minimal" ,bash-minimal)
- ("coreutils" ,coreutils) ; for bindings to "mkdir" and the like
- ("curl" ,curl-ssh)
- ("gfortran" ,gfortran)
- ;; required for libgcc_s.so
- ("gfortran:lib" ,gfortran "lib")
- ("gmp" ,gmp)
- ("lapack" ,lapack)
- ("libblastrampoline" ,libblastrampoline)
- ("libgit2" ,libgit2-1.3)
- ("libnghttp2" ,nghttp2 "lib")
- ("libssh2" ,libssh2)
- ("libunwind" ,libunwind-julia)
- ("libuv" ,libuv-julia)
- ("llvm" ,llvm-julia)
- ("mbedtls" ,mbedtls-lts)
- ("mpfr" ,mpfr)
- ,@(if (target-x86-64?)
- `(("openblas" ,openblas-ilp64))
- `(("openblas" ,openblas)))
- ("openlibm" ,openlibm)
- ("p7zip" ,p7zip)
- ("pcre2" ,pcre2)
- ("suitesparse" ,suitesparse)
- ("utf8proc" ,utf8proc-2.7.0)
- ("wget" ,wget)
- ("which" ,which)
- ("zlib" ,zlib)
- ;; Find dependencies versions here:
- ;; https://raw.githubusercontent.com/JuliaLang/julia/v1.6.0/deps/Versions.make
- ("dsfmt" ,dsfmt)
- ("libwhich" ,libwhich)))
- (native-inputs
- `(("openssl" ,openssl)
- ("perl" ,perl)
- ("patchelf" ,patchelf)
- ("pkg-config" ,pkg-config)
- ("python" ,python)))
+ (string-append "UTF8PROC_INC="
+ (assoc-ref %build-inputs "utf8proc")
+ "/include")
+ ;; Make.inc expects a static library for libuv.
+ (string-append "LIBUV="
+ (search-input-file %build-inputs
+ "/lib/libuv.a"))
+ (string-append "LIBUV_INC="
+ (dirname
+ (search-input-file
+ %build-inputs "/include/uv.h"))))))
+ (inputs (list coreutils ;for bindings to "mkdir" and the like
+ curl-ssh
+ gfortran
+ `(,gfortran "lib") ;required for libgcc_s.so
+ gmp
+ lapack
+ libblastrampoline
+ libgit2-1.5
+ `(,nghttp2 "lib")
+ libssh2
+ libunwind-julia
+ libuv-julia
+ llvm-14-julia
+ lld-14
+ mbedtls-apache
+ mpfr
+ (if (target-x86-64?) openblas-ilp64 openblas)
+ openlibm
+ p7zip
+ pcre2
+ suitesparse
+ utf8proc-2.7.0
+ wget
+ which
+ zlib
+ ;; Find dependencies versions here:
+ ;; https://raw.githubusercontent.com/JuliaLang/julia/v1.6.0/deps/Versions.make
+ dsfmt
+ libwhich))
+ (native-inputs (list openssl perl patchelf pkg-config python))
(native-search-paths
- (list (search-path-specification
- (variable "JULIA_LOAD_PATH")
- (files (list "share/julia/loadpath/")))
- (search-path-specification
- (variable "JULIA_DEPOT_PATH")
- (files (list "share/julia/")))
- $SSL_CERT_FILE))
+ (list (search-path-specification
+ (variable "JULIA_LOAD_PATH")
+ (files (list "share/julia/loadpath/")))
+ (search-path-specification
+ (variable "JULIA_DEPOT_PATH")
+ (files (list "share/julia/")))
+ $SSL_CERT_FILE))
;; Julia only officially supports some of our platforms:
;; https://julialang.org/downloads/#supported_platforms
(supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux"))
diff --git a/gnu/packages/llvm.scm b/gnu/packages/llvm.scm
index fd2e815fe0..671aee059e 100644
--- a/gnu/packages/llvm.scm
+++ b/gnu/packages/llvm.scm
@@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2016, 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2015, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2015, 2017-2021, 2024 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
;;; Copyright © 2016, 2018, 2019, 2020, 2021, 2023 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
@@ -2264,22 +2264,36 @@ (define-public wllvm
LLVM bitcode files.")
(license license:expat)))
-(define-public llvm-julia
+(define-public llvm-14-julia
(package
- (inherit llvm-13)
+ (inherit llvm-14)
+ (version "14.0.6-3-julia")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference (url "https://github.com/JuliaLang/llvm-project")
+ (commit "julia-14.0.6-3")))
+ (file-name (git-file-name "llvm-project-julia" "14.0.6-3"))
+ (sha256
+ (base32
+ "16ynl9g4paksvglk6asfxdr15gy21bzvsjdkqb1msbcnkz2x610x"))))
(arguments
- (substitute-keyword-arguments (package-arguments llvm-13)
- ((#:configure-flags flags ''())
+ (substitute-keyword-arguments (package-arguments llvm-14)
+ ((#:configure-flags flags
+ ''())
+ ; FIXME: I think we should basically duplicate
+ ; https://github.com/JuliaLang/julia/blob/master/deps/llvm.mk
#~(cons* "-DLLVM_BUILD_LLVM_DYLIB=ON"
"-DLLVM_LINK_LLVM_DYLIB=ON"
- ;; "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=NVPTX"
- "-DLLVM_VERSION_SUFFIX:STRING=jl" ; Perhaps not needed.
- #$(string-append "-DLLVM_TARGETS_TO_BUILD="
+ "-DLLVM_SHLIB_SYMBOL_VERSION:STRING=JL_LLVM_14.0"
+ "-DLLVM_VERSION_SUFFIX:STRING=jl" ;Perhaps not needed.
+ #$(string-append "-DLLVM_TARGETS_TO_BUILD=NVPTX;AMDGPU;"
(system->llvm-target))
- (delete "-DBUILD_SHARED_LIBS:BOOL=TRUE" #$flags)))
- ((#:build-type _) "Release")))
- (properties `((hidden? . #t)
- ,@(package-properties llvm-13)))))
+ (delete "-DBUILD_SHARED_LIBS:BOOL=TRUE"
+ #$flags)))
+ ((#:build-type _)
+ "Release")))
+ (properties `((hidden? . #t) ,@(package-properties llvm-14)))))
(define llvm-cling
;; To determine which version of LLVM a given release of Cling should use,
diff --git a/gnu/packages/patches/julia-1.9-build-tweaks.patch b/gnu/packages/patches/julia-1.9-build-tweaks.patch
new file mode 100644
index 0000000000..25f220b012
--- /dev/null
+++ b/gnu/packages/patches/julia-1.9-build-tweaks.patch
@@ -0,0 +1,152 @@
+Adjust the Julia 1.9 build system to unbundle libraries and otherwise fix things
+here and there.
+
+diff --git a/Make.inc b/Make.inc
+index 5bbb52617a..7e1215a2de 100644
+--- a/Make.inc
++++ b/Make.inc
+@@ -40,33 +40,39 @@ OPENBLAS_USE_THREAD:=1
+ # Flags for using libraries available on the system instead of building them.
+ # Please read the notes around usage of SYSTEM flags in README.md
+ # Issues resulting from use of SYSTEM versions will generally not be accepted.
+-USE_SYSTEM_CSL:=0
+-USE_SYSTEM_LLVM:=0
+-USE_SYSTEM_LIBUNWIND:=0
++USE_SYSTEM_CSL:=1
++USE_SYSTEM_LLVM:=1
++USE_SYSTEM_LIBUNWIND:=1
+ DISABLE_LIBUNWIND:=0
+-USE_SYSTEM_PCRE:=0
++USE_SYSTEM_PCRE:=1
+ USE_SYSTEM_LIBM:=0
+-USE_SYSTEM_OPENLIBM:=0
++USE_SYSTEM_OPENLIBM:=1
+ UNTRUSTED_SYSTEM_LIBM:=0
+-USE_SYSTEM_DSFMT:=0
+-USE_SYSTEM_LIBBLASTRAMPOLINE:=0
+-USE_SYSTEM_BLAS:=0
+-USE_SYSTEM_LAPACK:=0
+-USE_SYSTEM_GMP:=0
+-USE_SYSTEM_MPFR:=0
+-USE_SYSTEM_LIBSUITESPARSE:=0
+-USE_SYSTEM_LIBUV:=0
+-USE_SYSTEM_UTF8PROC:=0
+-USE_SYSTEM_MBEDTLS:=0
+-USE_SYSTEM_LIBSSH2:=0
+-USE_SYSTEM_NGHTTP2:=0
+-USE_SYSTEM_CURL:=0
+-USE_SYSTEM_LIBGIT2:=0
+-USE_SYSTEM_PATCHELF:=0
+-USE_SYSTEM_LIBWHICH:=0
+-USE_SYSTEM_ZLIB:=0
+-USE_SYSTEM_P7ZIP:=0
+-USE_SYSTEM_LLD:=0
++USE_SYSTEM_DSFMT:=1
++USE_SYSTEM_LIBBLASTRAMPOLINE:=1
++USE_SYSTEM_BLAS:=1
++USE_SYSTEM_LAPACK:=1
++USE_SYSTEM_GMP:=1
++USE_SYSTEM_MPFR:=1
++USE_SYSTEM_LIBSUITESPARSE:=1
++USE_SYSTEM_LIBUV:=1
++USE_SYSTEM_UTF8PROC:=1
++USE_SYSTEM_MBEDTLS:=1
++USE_SYSTEM_LIBSSH2:=1
++USE_SYSTEM_NGHTTP2:=1
++USE_SYSTEM_CURL:=1
++USE_SYSTEM_LIBGIT2:=1
++USE_SYSTEM_PATCHELF:=1
++USE_SYSTEM_LIBWHICH:=1
++USE_SYSTEM_ZLIB:=1
++USE_SYSTEM_P7ZIP:=1
++USE_SYSTEM_LLD:=1
++
++# Guix override
++USE_INTEL_JITEVENTS:=0
++USE_PERF_JITEVENTS:=0
++USE_BINARYBUILDER:=0
++
+
+ # Link to the LLVM shared library
+ USE_LLVM_SHLIB := 1
+@@ -1124,7 +1130,8 @@ else
+ endif
+
+ ifeq ($(USE_SYSTEM_UTF8PROC), 1)
+- LIBUTF8PROC := -lutf8proc
++ # Point to the static lib in Guix
++ LIBUTF8PROC := GUIX_LIBUTF8PROC
+ UTF8PROC_INC := $(LOCALBASE)/include
+ else
+ LIBUTF8PROC := $(build_libdir)/libutf8proc.a
+diff --git a/Makefile b/Makefile
+index ef0ade09e2..6b9177df60 100644
+--- a/Makefile
++++ b/Makefile
+@@ -11,7 +11,8 @@ all: debug release
+ # sort is used to remove potential duplicates
+ DIRS := $(sort $(build_bindir) $(build_depsbindir) $(build_libdir) $(build_private_libdir) $(build_libexecdir) $(build_includedir) $(build_includedir)/julia $(build_sysconfdir)/julia $(build_datarootdir)/julia $(build_datarootdir)/julia/stdlib $(build_man1dir))
+ ifneq ($(BUILDROOT),$(JULIAHOME))
+-BUILDDIRS := $(BUILDROOT) $(addprefix $(BUILDROOT)/,base src src/flisp src/support src/clangsa cli doc deps stdlib test test/clangsa test/embedding test/gcext test/llvmpasses)
++# FIXME: do not build doc yet
++BUILDDIRS := $(BUILDROOT) $(addprefix $(BUILDROOT)/,base src src/flisp src/support src/clangsa cli deps stdlib test test/clangsa test/embedding test/gcext test/llvmpasses)
+ BUILDDIRMAKE := $(addsuffix /Makefile,$(BUILDDIRS)) $(BUILDROOT)/sysimage.mk
+ DIRS := $(DIRS) $(BUILDDIRS)
+ $(BUILDDIRMAKE): | $(BUILDDIRS)
+@@ -64,6 +65,16 @@ julia-deps: | $(DIRS) $(build_datarootdir)/julia/base $(build_datarootdir)/julia
+ # `julia-stdlib` depends on `julia-deps` so that the fake JLL stdlibs can copy in their Artifacts.toml files.
+ julia-stdlib: | $(DIRS) julia-deps
+ @$(MAKE) $(QUIET_MAKE) -C $(BUILDROOT)/stdlib
++ # These files are checked-out during the build phase, but need to be fixed
++ # before the actual build, therefore we sed with a variable we'll fix before
++ # the build phase. It's twisted but it's the only working way I could find.
++ # The " are important to avoid double substitution when doing 'make' then
++ # 'make check'.
++ sed -i 's|"libcholmod"|"GUIX_LIBCHOLMOD"|' usr/share/julia/stdlib/v1.9/SparseArrays/src/solvers/cholmod.jl
++ sed -i 's|:libsuitesparseconfig|"GUIX_LIBSC"|' usr/share/julia/stdlib/v1.9/SparseArrays/src/solvers/cholmod.jl
++ sed -i 's|:libcholmod|"GUIX_LIBCHOLMOD"|' usr/share/julia/stdlib/v1.9/SparseArrays/src/solvers/LibSuiteSparse.jl
++ sed -i 's|:libspqr|"GUIX_LIBSPQR"|' usr/share/julia/stdlib/v1.9/SparseArrays/src/solvers/LibSuiteSparse.jl
++ sed -i 's|:libumfpack|"GUIX_LIBUMFPACK"|' usr/share/julia/stdlib/v1.9/SparseArrays/src/solvers/LibSuiteSparse.jl
+
+ julia-base: julia-deps $(build_sysconfdir)/julia/startup.jl $(build_man1dir)/julia.1 $(build_datarootdir)/julia/julia-config.jl
+ @$(MAKE) $(QUIET_MAKE) -C $(BUILDROOT)/base
+@@ -236,7 +247,9 @@ define stringreplace
+ endef
+
+
+-install: $(build_depsbindir)/stringreplace $(BUILDROOT)/doc/_build/html/en/index.html
++# Guix FIXME: building the doc requires internet. We should build them in a
++# separate build phase.
++install: $(build_depsbindir)/stringreplace # $(BUILDROOT)/doc/_build/html/en/index.html
+ @$(MAKE) $(QUIET_MAKE) $(JULIA_BUILD_MODE)
+ @for subdir in $(bindir) $(datarootdir)/julia/stdlib/$(VERSDIR) $(docdir) $(man1dir) $(includedir)/julia $(libdir) $(private_libdir) $(sysconfdir) $(private_libexecdir); do \
+ mkdir -p $(DESTDIR)$$subdir; \
+diff --git a/base/Makefile b/base/Makefile
+index 0ea0359c8c..9cee86aeec 100644
+--- a/base/Makefile
++++ b/base/Makefile
+@@ -239,7 +239,10 @@ endif
+ ifneq (,$(LIBGFORTRAN_VERSION))
+ $(eval $(call symlink_system_library,CSL,libgfortran,$(LIBGFORTRAN_VERSION)))
+ endif
+-$(eval $(call symlink_system_library,CSL,libquadmath,0))
++
++# libquadmath is not available on all architectures.
++# https://github.com/JuliaLang/julia/issues/41613
++$(eval $(call symlink_system_library,CSL,libquadmath,0,ALLOW_FAILURE))
+ $(eval $(call symlink_system_library,CSL,libstdc++,6))
+ # We allow libssp, libatomic and libgomp to fail as they are not available on all systems
+ $(eval $(call symlink_system_library,CSL,libssp,0,ALLOW_FAILURE))
+diff --git a/cli/Makefile b/cli/Makefile
+index 7ba238e0de..6540f6384a 100644
+--- a/cli/Makefile
++++ b/cli/Makefile
+@@ -7,7 +7,7 @@ include $(JULIAHOME)/deps/llvm-ver.make
+
+ HEADERS := $(addprefix $(SRCDIR)/,jl_exports.h loader.h) $(addprefix $(JULIAHOME)/src/,julia_fasttls.h support/platform.h support/dirpath.h jl_exported_data.inc jl_exported_funcs.inc)
+
+-LOADER_CFLAGS = $(JCFLAGS) -I$(BUILDROOT)/src -I$(JULIAHOME)/src -I$(JULIAHOME)/src/support -I$(build_includedir) -ffreestanding
++LOADER_CFLAGS = -D_GNU_SOURCE $(JCFLAGS) -I$(BUILDROOT)/src -I$(JULIAHOME)/src -I$(JULIAHOME)/src/support -I$(build_includedir) -ffreestanding
+ LOADER_LDFLAGS = $(JLDFLAGS) -ffreestanding -L$(build_shlibdir) -L$(build_libdir)
+
+ ifeq ($(OS),WINNT)
diff --git a/gnu/packages/patches/julia-Use-MPFR-4.2.patch b/gnu/packages/patches/julia-Use-MPFR-4.2.patch
deleted file mode 100644
index 73a395c89e..0000000000
--- a/gnu/packages/patches/julia-Use-MPFR-4.2.patch
+++ /dev/null
@@ -1,228 +0,0 @@
-This patch backports part of Julia upstream commit:
-
- 1e5fdb29f8858f3244f6aff116ee12e4c8247f3a
- Author: Simon Byrne <simon.byrne@gmail.com>
- AuthorDate: Tue Jan 10 14:52:36 2023 -0800
- Commit: GitHub <noreply@github.com>
- CommitDate: Tue Jan 10 17:52:36 2023 -0500
-
- update MPFR to 4.2.0 (#48165)
-
- Co-authored-by: Mosè Giordano <giordano@users.noreply.github.com>
-
- 6 files changed, 112 insertions(+), 79 deletions(-)
- base/mpfr.jl | 34 ++++++++++++++--
- deps/checksums/mpfr | 68 ++++++++++++++++----------------
- deps/mpfr.version | 2 +-
- stdlib/MPFR_jll/Project.toml | 2 +-
- stdlib/MPFR_jll/test/runtests.jl | 2 +-
- test/math.jl | 83 +++++++++++++++++++++-------------------
-
-
-diff -ur julia-1.8.3-orig/base/mpfr.jl julia-1.8.3-patch/base/mpfr.jl
---- julia-1.8.3-orig/base/mpfr.jl 2023-04-13 17:50:58.394891391 +0200
-+++ julia-1.8.3-patch/base/mpfr.jl 2023-04-13 20:42:52.551833467 +0200
-@@ -16,7 +16,8 @@
- cosh, sinh, tanh, sech, csch, coth, acosh, asinh, atanh, lerpi,
- cbrt, typemax, typemin, unsafe_trunc, floatmin, floatmax, rounding,
- setrounding, maxintfloat, widen, significand, frexp, tryparse, iszero,
-- isone, big, _string_n, decompose
-+ isone, big, _string_n, decompose, minmax,
-+ sinpi, cospi, sincospi, sind, cosd, tand, asind, acosd, atand
-
- import ..Rounding: rounding_raw, setrounding_raw
-
-@@ -745,7 +746,7 @@
- end
-
- # Functions for which NaN results are converted to DomainError, following Base
--for f in (:sin, :cos, :tan, :sec, :csc, :acos, :asin, :atan, :acosh, :asinh, :atanh)
-+for f in (:sin, :cos, :tan, :sec, :csc, :acos, :asin, :atan, :acosh, :asinh, :atanh, :sinpi, :cospi)
- @eval begin
- function ($f)(x::BigFloat)
- isnan(x) && return x
-@@ -756,6 +757,7 @@
- end
- end
- end
-+sincospi(x::BigFloat) = (sinpi(x), cospi(x))
-
- function atan(y::BigFloat, x::BigFloat)
- z = BigFloat()
-@@ -763,6 +765,32 @@
- return z
- end
-
-+# degree functions
-+for f in (:sin, :cos, :tan)
-+ @eval begin
-+ function ($(Symbol(f,:d)))(x::BigFloat)
-+ isnan(x) && return x
-+ z = BigFloat()
-+ ccall(($(string(:mpfr_,f,:u)), :libmpfr), Int32, (Ref{BigFloat}, Ref{BigFloat}, Culong, MPFRRoundingMode), z, x, 360, ROUNDING_MODE[])
-+ isnan(z) && throw(DomainError(x, "NaN result for non-NaN input."))
-+ return z
-+ end
-+ function ($(Symbol(:a,f,:d)))(x::BigFloat)
-+ isnan(x) && return x
-+ z = BigFloat()
-+ ccall(($(string(:mpfr_a,f,:u)), :libmpfr), Int32, (Ref{BigFloat}, Ref{BigFloat}, Culong, MPFRRoundingMode), z, x, 360, ROUNDING_MODE[])
-+ isnan(z) && throw(DomainError(x, "NaN result for non-NaN input."))
-+ return z
-+ end
-+ end
-+end
-+function atand(y::BigFloat, x::BigFloat)
-+ z = BigFloat()
-+ ccall((:mpfr_atan2u, :libmpfr), Int32, (Ref{BigFloat}, Ref{BigFloat}, Ref{BigFloat}, Culong, MPFRRoundingMode), z, y, x, 360, ROUNDING_MODE[])
-+ return z
-+end
-+
-+
- # Utility functions
- ==(x::BigFloat, y::BigFloat) = ccall((:mpfr_equal_p, :libmpfr), Int32, (Ref{BigFloat}, Ref{BigFloat}), x, y) != 0
- <=(x::BigFloat, y::BigFloat) = ccall((:mpfr_lessequal_p, :libmpfr), Int32, (Ref{BigFloat}, Ref{BigFloat}), x, y) != 0
-@@ -1018,7 +1046,7 @@
- isfinite(x) || return string(Float64(x))
- _prettify_bigfloat(string_mpfr(x, fmt))
- end
--_string(x::BigFloat) = _string(x, "%.Re")
-+_string(x::BigFloat) = _string(x, "%Re")
- _string(x::BigFloat, k::Integer) = _string(x, "%.$(k)Re")
-
- string(b::BigFloat) = _string(b)
-diff -ur julia-1.8.3-orig/test/math.jl julia-1.8.3-patch/test/math.jl
---- julia-1.8.3-orig/test/math.jl 2023-04-13 17:50:58.382891276 +0200
-+++ julia-1.8.3-patch/test/math.jl 2023-04-13 21:13:55.377279761 +0200
-@@ -411,47 +411,51 @@
- @test rad2deg(pi + (pi/3)*im) ≈ 180 + 60im
- end
-
-+# ensure zeros are signed the same
-+⩲(x,y) = typeof(x) == typeof(y) && x == y && signbit(x) == signbit(y)
-+⩲(x::Tuple, y::Tuple) = length(x) == length(y) && all(map(⩲,x,y))
-+
- @testset "degree-based trig functions" begin
-- @testset "$T" for T = (Float32,Float64,Rational{Int})
-+ @testset "$T" for T = (Float32,Float64,Rational{Int},BigFloat)
- fT = typeof(float(one(T)))
- fTsc = typeof( (float(one(T)), float(one(T))) )
- for x = -400:40:400
-- @test sind(convert(T,x))::fT ≈ convert(fT,sin(pi/180*x)) atol=eps(deg2rad(convert(fT,x)))
-- @test cosd(convert(T,x))::fT ≈ convert(fT,cos(pi/180*x)) atol=eps(deg2rad(convert(fT,x)))
-+ @test sind(convert(T,x))::fT ≈ sin(pi*convert(fT,x)/180) atol=eps(deg2rad(convert(fT,x)))
-+ @test cosd(convert(T,x))::fT ≈ cos(pi*convert(fT,x)/180) atol=eps(deg2rad(convert(fT,x)))
-
- s,c = sincosd(convert(T,x))
-- @test s::fT ≈ convert(fT,sin(pi/180*x)) atol=eps(deg2rad(convert(fT,x)))
-- @test c::fT ≈ convert(fT,cos(pi/180*x)) atol=eps(deg2rad(convert(fT,x)))
-+ @test s::fT ≈ sin(pi*convert(fT,x)/180) atol=eps(deg2rad(convert(fT,x)))
-+ @test c::fT ≈ cos(pi*convert(fT,x)/180) atol=eps(deg2rad(convert(fT,x)))
- end
- @testset "sind" begin
-- @test sind(convert(T,0.0))::fT === zero(fT)
-- @test sind(convert(T,180.0))::fT === zero(fT)
-- @test sind(convert(T,360.0))::fT === zero(fT)
-- T != Rational{Int} && @test sind(convert(T,-0.0))::fT === -zero(fT)
-- @test sind(convert(T,-180.0))::fT === -zero(fT)
-- @test sind(convert(T,-360.0))::fT === -zero(fT)
-+ @test sind(convert(T,0.0))::fT ⩲ zero(fT)
-+ @test sind(convert(T,180.0))::fT ⩲ zero(fT)
-+ @test sind(convert(T,360.0))::fT ⩲ zero(fT)
-+ T != Rational{Int} && @test sind(convert(T,-0.0))::fT ⩲ -zero(fT)
-+ @test sind(convert(T,-180.0))::fT ⩲ -zero(fT)
-+ @test sind(convert(T,-360.0))::fT ⩲ -zero(fT)
- if T <: AbstractFloat
- @test isnan(sind(T(NaN)))
- end
- end
- @testset "cosd" begin
-- @test cosd(convert(T,90))::fT === zero(fT)
-- @test cosd(convert(T,270))::fT === zero(fT)
-- @test cosd(convert(T,-90))::fT === zero(fT)
-- @test cosd(convert(T,-270))::fT === zero(fT)
-+ @test cosd(convert(T,90))::fT ⩲ zero(fT)
-+ @test cosd(convert(T,270))::fT ⩲ zero(fT)
-+ @test cosd(convert(T,-90))::fT ⩲ zero(fT)
-+ @test cosd(convert(T,-270))::fT ⩲ zero(fT)
- if T <: AbstractFloat
- @test isnan(cosd(T(NaN)))
- end
- end
- @testset "sincosd" begin
-- @test sincosd(convert(T,-360))::fTsc === ( -zero(fT), one(fT) )
-- @test sincosd(convert(T,-270))::fTsc === ( one(fT), zero(fT) )
-- @test sincosd(convert(T,-180))::fTsc === ( -zero(fT), -one(fT) )
-- @test sincosd(convert(T, -90))::fTsc === ( -one(fT), zero(fT) )
-- @test sincosd(convert(T, 0))::fTsc === ( zero(fT), one(fT) )
-- @test sincosd(convert(T, 90))::fTsc === ( one(fT), zero(fT) )
-- @test sincosd(convert(T, 180))::fTsc === ( zero(fT), -one(fT) )
-- @test sincosd(convert(T, 270))::fTsc === ( -one(fT), zero(fT) )
-+ @test sincosd(convert(T,-360))::fTsc ⩲ ( -zero(fT), one(fT) )
-+ @test sincosd(convert(T,-270))::fTsc ⩲ ( one(fT), zero(fT) )
-+ @test sincosd(convert(T,-180))::fTsc ⩲ ( -zero(fT), -one(fT) )
-+ @test sincosd(convert(T, -90))::fTsc ⩲ ( -one(fT), zero(fT) )
-+ @test sincosd(convert(T, 0))::fTsc ⩲ ( zero(fT), one(fT) )
-+ @test sincosd(convert(T, 90))::fTsc ⩲ ( one(fT), zero(fT) )
-+ @test sincosd(convert(T, 180))::fTsc ⩲ ( zero(fT), -one(fT) )
-+ @test sincosd(convert(T, 270))::fTsc ⩲ ( -one(fT), zero(fT) )
- if T <: AbstractFloat
- @test_throws DomainError sincosd(T(Inf))
- @test all(isnan.(sincosd(T(NaN))))
-@@ -463,22 +467,22 @@
- "sincospi" => (x->sincospi(x)[1], x->sincospi(x)[2])
- )
- @testset "pi * $x" for x = -3:0.3:3
-- @test sinpi(convert(T,x))::fT ≈ convert(fT,sin(pi*x)) atol=eps(pi*convert(fT,x))
-- @test cospi(convert(T,x))::fT ≈ convert(fT,cos(pi*x)) atol=eps(pi*convert(fT,x))
-+ @test sinpi(convert(T,x))::fT ≈ sin(pi*convert(fT,x)) atol=eps(pi*convert(fT,x))
-+ @test cospi(convert(T,x))::fT ≈ cos(pi*convert(fT,x)) atol=eps(pi*convert(fT,x))
- end
-
-- @test sinpi(convert(T,0.0))::fT === zero(fT)
-- @test sinpi(convert(T,1.0))::fT === zero(fT)
-- @test sinpi(convert(T,2.0))::fT === zero(fT)
-- T != Rational{Int} && @test sinpi(convert(T,-0.0))::fT === -zero(fT)
-- @test sinpi(convert(T,-1.0))::fT === -zero(fT)
-- @test sinpi(convert(T,-2.0))::fT === -zero(fT)
-+ @test sinpi(convert(T,0.0))::fT ⩲ zero(fT)
-+ @test sinpi(convert(T,1.0))::fT ⩲ zero(fT)
-+ @test sinpi(convert(T,2.0))::fT ⩲ zero(fT)
-+ T != Rational{Int} && @test sinpi(convert(T,-0.0))::fT ⩲ -zero(fT)
-+ @test sinpi(convert(T,-1.0))::fT ⩲ -zero(fT)
-+ @test sinpi(convert(T,-2.0))::fT ⩲ -zero(fT)
- @test_throws DomainError sinpi(convert(T,Inf))
-
-- @test cospi(convert(T,0.5))::fT === zero(fT)
-- @test cospi(convert(T,1.5))::fT === zero(fT)
-- @test cospi(convert(T,-0.5))::fT === zero(fT)
-- @test cospi(convert(T,-1.5))::fT === zero(fT)
-+ @test cospi(convert(T,0.5))::fT ⩲ zero(fT)
-+ @test cospi(convert(T,1.5))::fT ⩲ zero(fT)
-+ @test cospi(convert(T,-0.5))::fT ⩲ zero(fT)
-+ @test cospi(convert(T,-1.5))::fT ⩲ zero(fT)
- @test_throws DomainError cospi(convert(T,Inf))
- end
- @testset "Check exact values" begin
-@@ -489,8 +493,8 @@
- @test sincospi(one(T)/convert(T,6))[1] == 0.5
- @test_throws DomainError sind(convert(T,Inf))
- @test_throws DomainError cosd(convert(T,Inf))
-- T != Float32 && @test cospi(one(T)/convert(T,3)) == 0.5
-- T != Float32 && @test sincospi(one(T)/convert(T,3))[2] == 0.5
-+ fT == Float64 && @test isapprox(cospi(one(T)/convert(T,3)), 0.5)
-+ fT == Float64 && @test isapprox(sincospi(one(T)/convert(T,3))[2], 0.5)
- T == Rational{Int} && @test sinpi(5//6) == 0.5
- T == Rational{Int} && @test sincospi(5//6)[1] == 0.5
- end
-@@ -538,8 +542,8 @@
- end
- end
- end
-- @test @inferred(sinc(0//1)) === 1.0
-- @test @inferred(cosc(0//1)) === -0.0
-+ @test @inferred(sinc(0//1)) ⩲ 1.0
-+ @test @inferred(cosc(0//1)) ⩲ -0.0
-
- # test right before/after thresholds of Taylor series
- @test sinc(0.001) ≈ 0.999998355066745 rtol=1e-15
base-commit: f5449685143be0805a8a9b54ddecee94e368c6e9
--
2.46.0
^ permalink raw reply related [flat|nested] 5+ messages in thread* [bug#73197] [PATCH] gnu: julia: Update to 1.9.3.
2024-09-12 13:22 [bug#73197] [PATCH] gnu: julia: Update to 1.9.3 Ludovic Courtès
@ 2024-09-16 7:50 ` Efraim Flashner
2024-09-16 9:47 ` Ludovic Courtès
0 siblings, 1 reply; 5+ messages in thread
From: Efraim Flashner @ 2024-09-16 7:50 UTC (permalink / raw)
To: Ludovic Courtès
Cc: 73197, Ludovic Courtès, Philippe Virouleau, Simon Tournier
[-- Attachment #1: Type: text/plain, Size: 2116 bytes --]
On Thu, Sep 12, 2024 at 03:22:50PM +0200, Ludovic Courtès wrote:
> From: Ludovic Courtès <ludovic.courtes@inria.fr>
>
> * gnu/packages/julia.scm (julia): Update to 1.9.3.
> [arguments]: Use gexps.
> [inputs, native-inputs]: Remove labels.
> * gnu/packages/llvm.scm (llvm-julia): Rename to…
> (llvm-14-julia): … this. Upgrade to 14.0.6-3.
> * gnu/packages/patches/julia-1.9-build-tweaks.patch: New file.
> * gnu/packages/patches/julia-Use-MPFR-4.2.patch: Remove.
> * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
>
> Co-authored-by: Philippe Virouleau <philippe.virouleau@inria.fr>
> Change-Id: I6ef35c6cd31741a7725b50364dd0f8fa6a0c6424
> ---
> gnu/local.mk | 2 +-
> gnu/packages/julia.scm | 862 ++++++++++--------
> gnu/packages/llvm.scm | 38 +-
> .../patches/julia-1.9-build-tweaks.patch | 152 +++
> gnu/packages/patches/julia-Use-MPFR-4.2.patch | 228 -----
> 5 files changed, 651 insertions(+), 631 deletions(-)
> create mode 100644 gnu/packages/patches/julia-1.9-build-tweaks.patch
> delete mode 100644 gnu/packages/patches/julia-Use-MPFR-4.2.patch
>
> Hello comrades!
>
> Here is an update of Julia adapted from:
>
> https://gitlab.inria.fr/guix-hpc/guix-hpc/-/commit/eb83e466fe0b9492216abc46da26ec3a89b0a946
>
> Version 1.9.3 has been in the guix-hpc channel for a while. It’s not
> the latest version, not even the latest series, but it’s an improvement
> over what we have.
>
> Thoughts?
>
> Ludo’.
I tested it out on my machines and it built without problems on x86_64
and aarch64. However, I was unable to compile the julia packages we have
when there were some julia inputs.
Do we want to add it in as julia-next, and then we can continue pushing
the version forward and working on the package build failures separately?
--
Efraim Flashner <efraim@flashner.co.il> רנשלפ םירפא
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^ permalink raw reply [flat|nested] 5+ messages in thread
* [bug#73197] [PATCH] gnu: julia: Update to 1.9.3.
2024-09-16 7:50 ` Efraim Flashner
@ 2024-09-16 9:47 ` Ludovic Courtès
2024-09-20 15:29 ` Simon Tournier
0 siblings, 1 reply; 5+ messages in thread
From: Ludovic Courtès @ 2024-09-16 9:47 UTC (permalink / raw)
To: Efraim Flashner; +Cc: 73197, Philippe Virouleau, Simon Tournier
Hey Efraim,
Efraim Flashner <efraim@flashner.co.il> skribis:
> I tested it out on my machines and it built without problems on x86_64
> and aarch64. However, I was unable to compile the julia packages we have
> when there were some julia inputs.
>
> Do we want to add it in as julia-next, and then we can continue pushing
> the version forward and working on the package build failures separately?
Oh, good question. I was hoping to get some testing from
ci.guix.gnu.org but it hasn’t happened yet (I added a jobset but
apparently that didn’t work).
I would hope we can migrate straight to 1.9, but if that’s too tricky, I
agree we should follow the plan you describe.
Let me take a look at those failure to see how bad it is.
Thanks,
Ludo’.
^ permalink raw reply [flat|nested] 5+ messages in thread
* [bug#73197] [PATCH] gnu: julia: Update to 1.9.3.
2024-09-16 9:47 ` Ludovic Courtès
@ 2024-09-20 15:29 ` Simon Tournier
2024-09-22 7:24 ` Efraim Flashner
0 siblings, 1 reply; 5+ messages in thread
From: Simon Tournier @ 2024-09-20 15:29 UTC (permalink / raw)
To: Ludovic Courtès, Efraim Flashner; +Cc: 73197, Philippe Virouleau
Hi Ludo,
On lun., 16 sept. 2024 at 11:47, Ludovic Courtès <ludo@gnu.org> wrote:
> I would hope we can migrate straight to 1.9, but if that’s too tricky, I
> agree we should follow the plan you describe.
>
> Let me take a look at those failure to see how bad it is.
I would suggest to have julia-next.
And some ’package-with-julia’ transformation similar as
package-with-python or package-with-ocaml.
Somehow, that’s always painful to upgrade Julia because of the Julia
world rebuild and some (more than some?) package breakages.
That way it would easier to have the CI following the branch team-julia
where regular package would go, as well as julia-next upgrade. And the
manifest could build both set of packages (julia and julia-next) using
the transformation.
Users willing stable just install ’julia’ and ’julia-’ packages.
Adventurous users install ’julia-next’ and ’julia-*-next’.
WDYT?
Cheers,
simon
^ permalink raw reply [flat|nested] 5+ messages in thread
* [bug#73197] [PATCH] gnu: julia: Update to 1.9.3.
2024-09-20 15:29 ` Simon Tournier
@ 2024-09-22 7:24 ` Efraim Flashner
0 siblings, 0 replies; 5+ messages in thread
From: Efraim Flashner @ 2024-09-22 7:24 UTC (permalink / raw)
To: Simon Tournier; +Cc: 73197, Ludovic Courtès, Philippe Virouleau
[-- Attachment #1: Type: text/plain, Size: 1656 bytes --]
On Fri, Sep 20, 2024 at 05:29:41PM +0200, Simon Tournier wrote:
> Hi Ludo,
>
> On lun., 16 sept. 2024 at 11:47, Ludovic Courtès <ludo@gnu.org> wrote:
>
> > I would hope we can migrate straight to 1.9, but if that’s too tricky, I
> > agree we should follow the plan you describe.
> >
> > Let me take a look at those failure to see how bad it is.
>
> I would suggest to have julia-next.
>
> And some ’package-with-julia’ transformation similar as
> package-with-python or package-with-ocaml.
>
> Somehow, that’s always painful to upgrade Julia because of the Julia
> world rebuild and some (more than some?) package breakages.
>
> That way it would easier to have the CI following the branch team-julia
> where regular package would go, as well as julia-next upgrade. And the
> manifest could build both set of packages (julia and julia-next) using
> the transformation.
>
> Users willing stable just install ’julia’ and ’julia-’ packages.
> Adventurous users install ’julia-next’ and ’julia-*-next’.
>
> WDYT?
The problem is that the julia-build-system needs to be adapted to the
newer versions of Julia. IMO the benefit of having Julia and Julia-next
is that the julia-* packages are packaged, but those needing a newer
version of Julia can still get it from Guix. Then when we adapt the
julia-build-system we can deprecate julia-next, or have it point to the
next release.
--
Efraim Flashner <efraim@flashner.co.il> רנשלפ םירפא
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^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2024-09-22 7:25 UTC | newest]
Thread overview: 5+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2024-09-12 13:22 [bug#73197] [PATCH] gnu: julia: Update to 1.9.3 Ludovic Courtès
2024-09-16 7:50 ` Efraim Flashner
2024-09-16 9:47 ` Ludovic Courtès
2024-09-20 15:29 ` Simon Tournier
2024-09-22 7:24 ` Efraim Flashner
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