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Tue, 12 Jan 2021 04:38:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:47770) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kzG7m-0006D6-Le for guix-patches@gnu.org; Tue, 12 Jan 2021 04:38:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kzG7m-00058g-IV for guix-patches@gnu.org; Tue, 12 Jan 2021 04:38:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45712] [PATCHES] Improve Python package quality References: Resent-From: Lars-Dominik Braun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 12 Jan 2021 09:38:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45712 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Hartmut Goebel , Ricardo Wurmus Received: via spool by 45712-submit@debbugs.gnu.org id=B45712.161044425319701 (code B ref 45712); Tue, 12 Jan 2021 09:38:02 +0000 Received: (at 45712) by debbugs.gnu.org; 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bh=tA0pIASsK1vmrsi+xwhem2KTXsgM1s7ZFx+WG+qRW38=; b=EfjpiUkOkoz60bWXkzHkqY4Yn6edv/47IiXmF10Kq793olpJjcbOIB7pbKrJOWHFsolvJS Dntwz1XPg4WUo+fVCUj+LzM0c3QH4AxrOIJqroqHtEr/Yr8XF/kR13FgNEZwhqnpkuoEMl miKFJV6qQLlAuBCNM2PQRTiBs395FcEP2QvHj5g0fmC+1pfl6xFVI93CcCLoghIuMOJChE l3MSVvipUe8toyR60HE9N4Ul8DhVwGEsVgABUYb+0kkxEeETOaTLcoZGe68RUYuaUkep+X TvLs04J2G97yfx4qLh475iUNvBQJ7D2Tz++YYe5vrZFm9h1kshIf4oQqsRP/RQ== Received: from smtp2.mailbox.org ([80.241.60.241]) by spamfilter01.heinlein-hosting.de (spamfilter01.heinlein-hosting.de [80.241.56.115]) (amavisd-new, port 10030) with ESMTP id zzwYouXiXdcg; Tue, 12 Jan 2021 10:37:10 +0100 (CET) Date: Tue, 12 Jan 2021 10:37:07 +0100 From: Lars-Dominik Braun Message-ID: MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="2od4rfdDquHCcG1s" Content-Disposition: inline Content-Transfer-Encoding: 8bit In-Reply-To: <87pn2ffwoe.fsf@elephly.net> <87mtxj1wym.fsf@lenashee.goebel-consult.de> X-MBO-SPAM-Probability: X-Rspamd-Score: -6.22 / 15.00 / 15.00 X-Rspamd-Queue-Id: 9816717D7 X-Rspamd-UID: 8dfd68 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: 45712@debbugs.gnu.org Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: -1.26 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=6xq.net header.s=MBO0001 header.b=EfjpiUkO; dmarc=fail reason="SPF not aligned (relaxed)" header.from=6xq.net (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 878F7940276 X-Spam-Score: -1.26 X-Migadu-Scanner: scn1.migadu.com X-TUID: QaTAqgKq9xqP --2od4rfdDquHCcG1s Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: 8bit Hi Hartmut, > Please but this int a new line - makeing it easier to copy & paste. > (Leading emptry lines doe nor effect "from __future__ import"). adopted Ricardo’s suggestion here. > This looks very uncommon (and make my mind hooking on it). Please use > this, which is more common and less mindbogling ;-) Done. > Any reason for converting the req into a string first? IC, > "`requirements` must be a string". So I'd move the "str()" to the > function call: Yes, the string is used in the error message. > if group not in {'console_scripts', 'gui_scripts'}: > Why not gui-scripts? > If not adding gui-scripts, just use "if group != 'concolse_scrips':" I wasn’t aware this exists. Added, thanks! > Does it make sence to try loading the top-level modules *after* the the > entry-point? Chances are very high that the entry-points implicitly test > the top-level modules already. > IMHO it would make more sense to first try the top-level modules, and > even stop processing if this fails. True, I reversed the order. Still, I think continuing with the entry points might be worth, if it points out more (different) errors. For small packages this might not be the case, but larger ones often only re-export specific names in the top-level module, thus testing might reveal more issues. > Please add a short explanation why there can be unavailable top-level > modules. Done. > While not having antoher idea, I'm not happy with this name. "loadable" > is not easy to get. (See also below, where this term is used in commit message.) > top-level-modules-are-importable? I’m also not happy with the name, but can’t think of a better one right now. Anyone? > AFAIKS the packages only differ by some requirements. So I suggest > using a function to return the packages. This makes it easier to spot > the actull differences. > […] > (mkdir-p "src/dummy") > (chdir "src") Done. > I would strip this down (version is not required AFAIK) and put it one > line (her assuming you use (format) for creating the code within a function: Not sure whether it’s optional or not, [1] does not say it is. No harm in keeping it? [1] https://setuptools.readthedocs.io/en/latest/references/keywords.html?highlight=version#keywords > Arguments are not used? Fixed. > Any reason for relaxing this? Why not use python-pytest-6 as input? Yes, our pytest@6 package reports its version as 0.0.0, so this patch is required with either package. Or we figure out how to fix pytest@6 (works fine with PEP 517 compliant build system). > Please rephrase into something like > Do not validate loadability Done. > Dosn't this change fix the checks? So this comment would be obsoltes and > "#:tests #t" can be removed. Should’ve been #f, sorry, fixed. > I suggest keeping the old way, as this is will automatically update to > upstream changes. Okay, I’ve added another phase that disables the test manually, because it fails for me every time. See attached patchset (v2) or git repository for updated patches. I’ve also rebuilt all 2284 packages depending on python-build-system. Currently 426 of them fail to build for any reason (not necessarily caused by this patchset; I’ve seen some unrelated issues). Due to the large number of packages failing I suggest moving forward with applying this first batch and then fixing everything else incrementally, unless some major package is broken (see attached list). WDYT? Cheers, Lars --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=utf-8 Content-Disposition: attachment; filename="0001-build-system-python-Validate-installed-package.patch" Content-Transfer-Encoding: 8bit >From 69bd0e11b9a054837e1733858490f0aec3830eca Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Sun, 3 Jan 2021 10:30:29 +0100 Subject: [PATCH v2 01/16] build-system/python: Validate installed package MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Adds a new phase validating usalibity of installed Python packages. * guix/build/python-build-system.scm (validate-script): Add script. (validate-loadable): New phase. (%standard-phases): Use it. * tests/builders.scm (make-python-dummy): Add test package generator. (check-build-{success,failure}): Add build helper functions. (python-dummy-*): Add test packages. ("python-build-system: …"): Add tests. --- guix/build/python-build-system.scm | 80 +++++++++++++++++++++ tests/builders.scm | 108 ++++++++++++++++++++++++++++- 2 files changed, 185 insertions(+), 3 deletions(-) diff --git a/guix/build/python-build-system.scm b/guix/build/python-build-system.scm index 09bd8465c8..3c29efea8b 100644 --- a/guix/build/python-build-system.scm +++ b/guix/build/python-build-system.scm @@ -148,6 +148,85 @@ (format #t "test suite not run~%")) #t) +(define validate-script + "\ +from __future__ import print_function # Python 2 support. +import pkg_resources, sys, importlib, traceback +try: + from importlib.machinery import PathFinder +except ImportError: + PathFinder = None +ret = 0 +# Only check site-packages installed by this package, but not dependencies +# (which pkg_resources.working_set would include). Path supplied via argv. +ws = pkg_resources.find_distributions(sys.argv[1]) +for dist in ws: + print('validating', repr(dist.project_name), dist.location) + try: + print('...checking requirements: ', end='') + req = str(dist.as_requirement()) + # dist.activate() is not enough to actually check requirements, we have to + # .require() it. + pkg_resources.require(req) + print('OK') + except Exception as e: + print('ERROR:', req, e) + ret = 1 + continue + + # Try to load top level modules. This should not have any side-effects. + try: + metalines = dist.get_metadata_lines('top_level.txt') + except KeyError: + # distutils (i.e. #:use-setuptools? #f) will not install any metadata. + print('WARNING: cannot determine top-level modules') + continue + for name in metalines: + # Only available on Python 3. + if PathFinder and PathFinder.find_spec(name) is None: + # Ignore unavailable modules, often C modules, which were not + # installed at the top-level. Cannot use ModuleNotFoundError, + # because it is raised by failed imports too. + continue + try: + print('...trying to load module', name, end=': ') + importlib.import_module(name) + print('OK') + except Exception: + print('ERROR:') + traceback.print_exc(file=sys.stdout) + ret = 1 + continue + + # Try to load entry points of console scripts too, making sure they work. They + # should be removed if they don’t. Other groups may not be safe, as they can + # depend on optional packages. + for group, v in dist.get_entry_map().items(): + if group not in {'console_scripts', 'gui_scripts'}: + continue + for name, ep in v.items(): + try: + print('...trying to load endpoint', group, name, end=': ') + ep.load() + print('OK') + except Exception: + print('ERROR:') + traceback.print_exc(file=sys.stdout) + ret = 1 + continue + +sys.exit(ret)") + +(define* (validate-loadable #:key tests? inputs outputs #:allow-other-keys) + "Ensure packages depending on this package via setuptools work properly, +their advertised endpoints work and their top level modules are importable +without errors." + (add-installed-pythonpath inputs outputs) + ;; Make sure the working directory is empty (i.e. no Python modules in it) + (with-directory-excursion "/tmp" + (invoke "python" "-c" validate-script (site-packages inputs outputs))) + #t) + (define (python-version python) (let* ((version (last (string-split python #\-))) (components (string-split version #\.)) @@ -267,6 +346,7 @@ installed with setuptools." (replace 'install install) (add-after 'install 'check check) (add-after 'install 'wrap wrap) + (add-after 'check 'validate-loadable validate-loadable) (add-before 'strip 'rename-pth-file rename-pth-file))) (define* (python-build #:key inputs (phases %standard-phases) diff --git a/tests/builders.scm b/tests/builders.scm index fdcf38ded3..929d1a906e 100644 --- a/tests/builders.scm +++ b/tests/builders.scm @@ -21,15 +21,15 @@ #:use-module (guix download) #:use-module (guix build-system) #:use-module (guix build-system gnu) + #:use-module (guix build-system python) #:use-module (guix store) + #:use-module (guix monads) #:use-module (guix utils) #:use-module (guix base32) #:use-module (guix derivations) #:use-module (gcrypt hash) #:use-module (guix tests) - #:use-module ((guix packages) - #:select (package? - package-derivation package-native-search-paths)) + #:use-module (guix packages) #:use-module (gnu packages bootstrap) #:use-module (ice-9 match) #:use-module (srfi srfi-1) @@ -78,4 +78,106 @@ (test-assert "gnu-build-system" (build-system? gnu-build-system)) + +(define* (make-python-dummy name #:key (setup-py-extra "") (init-py "") (use-setuptools? #t)) + (package + (name (string-append "python-dummy-" name)) + (version "0.1") + (source #f) ; source is generated in 'unpack + (build-system python-build-system) + (arguments + `(#:tests? #f + #:use-setuptools? ,use-setuptools? + #:phases + (modify-phases %standard-phases + (replace 'unpack + (lambda _ + (mkdir-p "src/dummy") + (chdir "src") + (with-output-to-file "dummy/__init__.py" + (lambda _ + (display ,init-py))) + (with-output-to-file "setup.py" + (lambda _ + (format #t "\ +~a +setup( + name='dummy-~a', + version='0.1', + packages=['dummy'], + ~a + )" + (if ,use-setuptools? + "from setuptools import setup" + "from distutils.core import setup") + ,name ,setup-py-extra))) + #t))))) + (home-page #f) + (synopsis #f) + (description #f) + (license #f))) + +(define python-dummy-ok + (make-python-dummy "ok")) + +(define python2-dummy-ok + (package-with-python2 python-dummy-ok)) + +;; distutil won’t install any metadata, so make sure our script does not fail +;; on a otherwise fine package. +(define python-dummy-no-setuptools + (make-python-dummy + "no-setuptools" #:use-setuptools? #f)) + +(define python2-dummy-no-setuptools + (package-with-python2 python-dummy-no-setuptools)) + +(define python-dummy-fail-requirements + (make-python-dummy "fail-requirements" + #:setup-py-extra "install_requires=['nonexistent'],")) + +(define python2-dummy-fail-requirements + (package-with-python2 python-dummy-fail-requirements)) + +(define python-dummy-fail-import + (make-python-dummy "fail-import" #:init-py "import nonexistent")) + +(define python2-dummy-fail-import + (package-with-python2 python-dummy-fail-import)) + +(define python-dummy-fail-console-script + (make-python-dummy "fail-console-script" + #:setup-py-extra (string-append "entry_points={'console_scripts': " + "['broken = dummy:nonexistent']},"))) + +(define python2-dummy-fail-console-script + (package-with-python2 python-dummy-fail-console-script)) + +(define (check-build-success store p) + (unless store (test-skip 1)) + (test-assert (string-append "python-build-system: " (package-name p)) + (let* ((drv (package-derivation store p))) + (build-derivations store (list drv))))) + +(define (check-build-failure store p) + (unless store (test-skip 1)) + (test-assert (string-append "python-build-system: " (package-name p)) + (not (false-if-exception (package-derivation store python-dummy-fail-requirements))))) + +(with-external-store store + (for-each (lambda (p) (check-build-success store p)) + (list + python-dummy-ok + python-dummy-no-setuptools + python2-dummy-ok + python2-dummy-no-setuptools)) + (for-each (lambda (p) (check-build-failure store p)) + (list + python-dummy-fail-requirements + python-dummy-fail-import + python-dummy-fail-console-script + python2-dummy-fail-requirements + python2-dummy-fail-import + python2-dummy-fail-console-script))) + (test-end "builders") -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0002-gnu-pytest-6-Add-missing-propagated-input.patch" >From e99707fb4cea9db88721192e84044dbdf1b1ca9b Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:25:56 +0100 Subject: [PATCH v2 02/16] gnu: pytest@6: Add missing propagated-input. * gnu/packages/check.scm (python-pytest-6) [native-inputs]: Remove python-iniconfig. [propagated-inputs]: Move it here. --- gnu/packages/check.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 1300f9e1a6..9d1e0b8173 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -964,13 +964,13 @@ and many external plugins.") (propagated-inputs (append (alist-delete "python-py" (package-propagated-inputs python-pytest)) - `(("python-py" ,python-py-next)))) + `(("python-py" ,python-py-next) + ("python-iniconfig" ,python-iniconfig)))) (native-inputs (append (alist-delete "python-pytest" (package-native-inputs python-pytest)) `(("python-pytest" ,python-pytest-6-bootstrap) - ("python-toml" ,python-toml) - ("python-iniconfig" ,python-iniconfig)))))) + ("python-toml" ,python-toml)))))) ;; Pytest 4.x are the last versions that support Python 2. (define-public python2-pytest -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0003-gnu-python-pytest-xdist-Add-missing-input-relax-pyte.patch" >From 23077674975a0194f38ed70d0a912ab52c4af3fe Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:27:55 +0100 Subject: [PATCH v2 03/16] gnu: python-pytest-xdist: Add missing input, relax pytest requirement. * gnu/packages/check.scm: (python-pytest-xdist) [arguments]: Relax pytest version requirements. [propagated-inputs]: Add python-pytest-forked. --- gnu/packages/check.scm | 25 ++++++++++++++++--------- 1 file changed, 16 insertions(+), 9 deletions(-) diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 9d1e0b8173..2136b8fc4f 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -1216,20 +1216,27 @@ same arguments.") #t)))) (build-system python-build-system) (arguments - '(#:tests? #f)) ;FIXME: Some tests are failing. - ;; #:phases - ;; (modify-phases %standard-phases - ;; (delete 'check) - ;; (add-after 'install 'check - ;; (lambda* (#:key inputs outputs #:allow-other-keys) - ;; (add-installed-pythonpath inputs outputs) - ;; (zero? (system* "py.test" "-v"))))) + '(#:tests? #f ; Lots of tests fail. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-setup-py + (lambda _ + ;; Relax pytest requirement. + (substitute* "setup.py" + (("pytest>=6\\.0\\.0") "pytest")) + #t)) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "py.test" "-v"))))))) (native-inputs `(("python-setuptools-scm" ,python-setuptools-scm))) (propagated-inputs `(("python-execnet" ,python-execnet) ("python-pytest" ,python-pytest) - ("python-py" ,python-py))) + ("python-py" ,python-py) + ("python-pytest-forked" ,python-pytest-forked))) (home-page "https://github.com/pytest-dev/pytest-xdist") (synopsis -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0004-gnu-python-fixtures-bootstrap-Do-not-validate-loadab.patch" >From 478a266a4299a05835bbfc19099a1f0afc318d8a Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:29:59 +0100 Subject: [PATCH v2 04/16] gnu: python-fixtures-bootstrap: Do not validate loadability * gnu/packages/check.scm (python-fixtures-bootstrap) [arguments]: Delete 'validate-loadable. --- gnu/packages/check.scm | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 2136b8fc4f..e4761eb66a 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -1541,7 +1541,12 @@ protocol."))) (base32 "1vxj29bzz3rd4pcy51d05wng9q9dh4jq6wx92yklsm7i6h1ddw7w")))) (build-system python-build-system) - (arguments `(#:tests? #f)) + (arguments + `(#:tests? #f + #:phases + (modify-phases %standard-phases + ;; Package is not loadable on its own at this stage. + (delete 'validate-loadable)))) (propagated-inputs `(("python-pbr-minimal" ,python-pbr-minimal) ("python-six" ,python-six))) -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0005-gnu-python-pytest-pep8-Fix-package.patch" >From ac7d664c3748afb9059ed3d147c13a9033fff45b Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:35:11 +0100 Subject: [PATCH v2 05/16] gnu: python-pytest-pep8: Fix package. * gnu/packages/check.scm (python-pytest-pep8) [arguments]: Remove dependency on pytest-cache and add proper 'check phase. --- gnu/packages/check.scm | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index e4761eb66a..c12cb98a6c 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -2043,7 +2043,19 @@ failures.") "06032agzhw1i9d9qlhfblnl3dw5hcyxhagn7b120zhrszbjzfbh3")))) (build-system python-build-system) (arguments - `(#:tests? #f)) ; Fails with recent pytest and pep8. See upstream issues #8 and #12. + `(#:tests? #f ; Fails with recent pytest and pep8. See upstream issues #8 and #12. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-dependencies + (lambda _ + (substitute* "setup.py" + (("'pytest-cache', ") "")) ; Included in recent pytest + #t)) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-v"))))))) (native-inputs `(("python-pytest" ,python-pytest))) (propagated-inputs -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0006-gnu-python-pyfakefs-Disable-unreliable-test.patch" >From e76db5088bafd7a3788a80a834d4983e0eed0e6a Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Mon, 11 Jan 2021 14:44:02 +0100 Subject: [PATCH v2 06/16] gnu: python-pyfakefs: Disable unreliable test * gnu/packages/check.scm (python-pyfakefs) [arguments]: Add new phase to skip single test. --- gnu/packages/check.scm | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index c12cb98a6c..9ddf656324 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -2858,6 +2858,16 @@ grew out of the @dfn{Vc} project.") (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'patch-testsuite + (lambda _ + ;; Time difference is larger than expected. + (substitute* "pyfakefs/tests/fake_filesystem_unittest_test.py" + (("(\\s+)def test_copy_real_file" all indent) + (string-append + indent + "@unittest.skip('disabled by guix')\n" + all))) + #t)) ;; The default test suite does not run these extra tests. (add-after 'check 'check-pytest-plugin (lambda _ -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0007-gnu-python-slugify-Add-missing-input.patch" >From 203cd356f44081a753b1f67ec14ab00ec1bd8520 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:48:36 +0100 Subject: [PATCH v2 07/16] gnu: python-slugify: Add missing input. * gnu/packages/python-web.scm (python-slugify) [propagated-inputs]: Add python-text-unidecode. --- gnu/packages/python-web.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 622f5fc6e2..e3cf25a687 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -4398,7 +4398,8 @@ Python.") (sha256 (base32 "0w22fapghmzk3xdasc4dn7h8sl58l08d1h5zbf72dh80drv1g9b9")))) (propagated-inputs - `(("python-unidecode" ,python-unidecode))) + `(("python-unidecode" ,python-unidecode) + ("python-text-unidecode" ,python-text-unidecode))) (arguments `(#:phases (modify-phases %standard-phases -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0008-gnu-python-websockets-Fix-Python-package-name.patch" >From fe3ec027ce3fe198a2cdfe3e1329094f2525fa42 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:49:01 +0100 Subject: [PATCH v2 08/16] gnu: python-websockets: Fix Python package name. * gnu/packages/python-web.scm (python-websockets) [arguments]: Add new phase to fix package name. --- gnu/packages/python-web.scm | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index e3cf25a687..e3318a18ce 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -5086,7 +5086,16 @@ Plus all the standard features of requests: (base32 "03s3ml6sbki24aajllf8aily0xzrn929zxi84p50zkkbikdd4raw")))) (build-system python-build-system) - (arguments '(#:tests? #f)) ; Tests not included in release tarball. + (arguments + '(#:tests? #f ; Tests not included in release tarball. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch + (lambda* (#:key inputs #:allow-other-keys) + ;; Python package names use dot as separator. + (substitute* "setup.py" + (("websockets/extensions") "websockets.extensions")) + #t))))) (home-page "https://github.com/aaugustin/websockets") (synopsis "Python implementation of the WebSocket Protocol (RFC 6455 & 7692)") -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0009-gnu-python-black-Remove-blackd.patch" >From d8199ab0353aa215d193ca511a63d4eea355b6c6 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:50:18 +0100 Subject: [PATCH v2 09/16] gnu: python-black: Remove blackd. * gnu/packages/python-xyz.scm (python-black) [arguments]: Add new phase to prevent installation of blackd. --- gnu/packages/python-xyz.scm | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 818a244378..a02960f1c6 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -4277,7 +4277,14 @@ matching of file paths.") (substitute* "tests/test_black.py" (("( *)def test_python38" match indent) (string-append indent "@unittest.skip(\"guix\")\n" match))) - #t))))) + #t)) + ;; Remove blackd, because it depends on python-aiohttp and + ;; python-aiohttp-cors. + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "setup.py" + (("\\s*\"blackd=blackd:patched_main \\[d\\]\",\n") "") + (("\"blackd\", ") ""))))))) (propagated-inputs `(("python-click" ,python-click) ("python-attrs" ,python-attrs) -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0010-gnu-python-traitlets-Add-missing-input.patch" >From b7ec4d0705bab46fa682a79de530336e2ff46775 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 13:53:25 +0100 Subject: [PATCH v2 10/16] gnu: python-traitlets: Add missing input. * gnu/packages/python-xyz.scm (python-traitlets) [propagated-inputs]: Add python-six. --- gnu/packages/python-xyz.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index a02960f1c6..4b7fff5750 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -6973,7 +6973,8 @@ cluster down and deletes the throwaway profile.") (replace 'check (lambda _ (invoke "pytest" "-vv" "traitlets")))))) (propagated-inputs `(("python-ipython-genutils" ,python-ipython-genutils) - ("python-decorator" ,python-decorator))) + ("python-decorator" ,python-decorator) + ("python-six" ,python-six))) (native-inputs `(("python-pytest" ,python-pytest))) (properties `((python2-variant . ,(delay python2-traitlets)))) -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0011-gnu-python-idna-ssl-Add-missing-input.patch" >From e17eb838b9d77588200ac6db652e87bcd73e3f87 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 14:12:56 +0100 Subject: [PATCH v2 11/16] gnu: python-idna-ssl: Add missing input. * gnu/packages/python-xyz.scm (python-idna-ssl) [propagated-inputs]: Add python-idna. --- gnu/packages/python-xyz.scm | 1 + 1 file changed, 1 insertion(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 4b7fff5750..58ad3b6e55 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9517,6 +9517,7 @@ is binding LibSass.") (build-system python-build-system) (arguments `(#:tests? #f)) ;circular dependency with python-aiohttp + (propagated-inputs `(("python-idna" ,python-idna))) (home-page "https://github.com/aio-libs/idna-ssl") (synopsis "Patch @code{ssl.match_hostname} for Unicode(idna) domains support") (description "Patch @code{ssl.match_hostname} for Unicode(idna) -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0012-gnu-python-twisted-Remove-broken-console-scripts.patch" >From 3372011b15cd28b203590981f5e1c561f977e31f Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 14:13:53 +0100 Subject: [PATCH v2 12/16] gnu: python-twisted: Remove broken console scripts. * gnu/packages/python-xyz.scm (python-twisted) [arguments]: Patch setup.py. --- gnu/packages/python-xyz.scm | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 58ad3b6e55..d8b61cd1d2 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -12716,7 +12716,14 @@ format.") "17d3hnxv9qndagzz63mdpyk99xj63p9gq586vjn0rxk8cl197nym")))) (build-system python-build-system) (arguments - '(#:tests? #f)) ; FIXME: some tests fail + '(#:tests? #f ; FIXME: some tests fail + #:phases + (modify-phases %standard-phases + ;; Remove scripts, because they depend on [conch] + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "src/twisted/python/_setup.py" + (("\".+ = twisted\\.conch\\.scripts\\..+\",") ""))))))) (propagated-inputs `(("python-zope-interface" ,python-zope-interface) ("python-pyhamcrest" ,python-pyhamcrest) -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0013-gnu-python-automat-Remove-broken-console-script.patch" >From 7f644bb845249c32a2504fad0625dd75a6c01ce1 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 14:15:12 +0100 Subject: [PATCH v2 13/16] gnu: python-automat: Remove broken console script. * gnu/packages/python-xyz.scm (python-automat) [arguments]: Patch setup.py. --- gnu/packages/python-xyz.scm | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index d8b61cd1d2..acd674878a 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -15151,7 +15151,15 @@ instead of servers and network commands.") ;; python-twisted depends on python-automat. Twisted is optional, but the ;; tests fail if it is not available. Also see ;; . - (arguments '(#:tests? #f)) + (arguments + `(#:tests? #f + #:phases + (modify-phases %standard-phases + ;; Remove script, because it depends on python-twisted. + (add-after 'unpack 'remove-entrypoint + (lambda _ + (substitute* "setup.py" + (("\"automat-visualize = automat._visualize:tool\"") ""))))))) (native-inputs `(("python-m2r" ,python-m2r) ("python-setuptools-scm" ,python-setuptools-scm) -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0014-gnu-python-packaging-bootstrap-Remove-dependency.patch" >From ff4f539c9c4cd18e7f5c9bea4f87eec42ee81394 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 14:16:05 +0100 Subject: [PATCH v2 14/16] gnu: python-packaging-bootstrap: Remove dependency. * gnu/packages/python-xyz.scm (python-packaging-bootstrap) [arguments]: Remove dependency from setup.py, which we do not provide for this variant. --- gnu/packages/python-xyz.scm | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index acd674878a..e78016221f 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -16049,10 +16049,18 @@ information.") (package/inherit python-packaging (name "python-packaging-bootstrap") + (arguments + (substitute-keyword-arguments (package-arguments python-packaging) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'fix-dependencies + (lambda* (#:key tests? #:allow-other-keys) + (substitute* "setup.py" (("\"six\"") "")) + #t)))) + ((#:tests? _ #f) #f))) (native-inputs '()) (propagated-inputs - `(("python-pyparsing" ,python-pyparsing))) - (arguments '(#:tests? #f))))) + `(("python-pyparsing" ,python-pyparsing)))))) (define-public python2-packaging-bootstrap (hidden-package -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0015-gnu-python-traceback2-Add-missing-dependency.patch" >From 65d2ab65d4dd73e1bdb0248cc41848c55859f98d Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Thu, 7 Jan 2021 14:17:20 +0100 Subject: [PATCH v2 15/16] gnu: python-traceback2: Add missing dependency. * gnu/packages/python-xyz.scm (python-traceback2) [propagated-inputs]: Add python-six. --- gnu/packages/python-xyz.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index e78016221f..1df9807626 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -17266,7 +17266,8 @@ lines are read from a single file.") (native-inputs `(("python-pbr" ,python-pbr-minimal))) (propagated-inputs - `(("python-linecache2" ,python-linecache2))) + `(("python-linecache2" ,python-linecache2) + ("python-six" ,python-six))) (home-page "https://github.com/testing-cabal/traceback2") (synopsis "Backports of the traceback module") -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0016-gnu-python2-packaging-bootstrap-Add-missing-dependen.patch" >From 55aab0eba972c6672be9d8de5e0ec9340b10c243 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Mon, 11 Jan 2021 15:19:01 +0100 Subject: [PATCH v2 16/16] gnu: python2-packaging-bootstrap: Add missing dependency * gnu/packages/python-xyz.scm (python2-packaging-bootstrap) [propagated-inputs]: Add python2-six-bootstrap. --- gnu/packages/python-xyz.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 1df9807626..434946acfd 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -16069,7 +16069,8 @@ information.") (name "python2-packaging-bootstrap") (native-inputs '()) (propagated-inputs - `(("python-pyparsing" ,python2-pyparsing))) + `(("python-pyparsing" ,python2-pyparsing) + ("python-six" ,python2-six-bootstrap))) (arguments `(#:tests? #f ,@(package-arguments python2-packaging)))))) -- 2.26.2 --2od4rfdDquHCcG1s Content-Type: text/plain; charset=us-ascii Content-Disposition: attachment; filename="failing-packages.txt" awscli b4 beets beets-bandcamp behave bpython buku calibre certbot curseradio dbxfs debops diffoscope docker-compose electron-cash electrum enjarify fabric fdroidserver fenics frescobaldi gandi.cli gaupol gitless gpodder grit grocsvs instantmusic jrnl jupyter keepkey-agent khmer ledger-agent letsencrypt linkchecker mailman miso mps-youtube nmoldyn nototools offlate onionshare openshot pagekite patchwork pbtranscript-tofu pepr picard poetry poretools postorius pre-commit presentty protonvpn-cli ptpython2 pulseaudio-dlna pybitmessage pyicoteo python2-anaconda-client python2-apache-libcloud python2-argcomplete python2-arrow python2-autograd python2-axolotl python2-bcrypt python2-behave-web-api python2-betamax python2-betamax-matchers python2-bigfloat python2-biom-format python2-booleanoperations python2-botocore python2-cachecontrol python2-cairocffi python2-celery python2-checkm-genome python2-clf python2-cloudpickle python2-consul python2-cryptography python2-cvxopt python2-cypari2 python2-discogs-client python2-dns-lexicon python2-drmaa python2-dulwich python2-ecpy python2-elasticsearch python2-email-validator python2-empy python2-entrypoints python2-factory-boy python2-faker python2-fakeredis python2-falcon python2-falcon-cors python2-fastlmm python2-fido2 python2-flake8 python2-flake8-polyfill python2-flask python2-flask-babel python2-flask-htmlmin python2-flask-login python2-flask-multistatic python2-flask-wtf python2-flex python2-furl python2-future python2-git-review python2-google-api-client python2-graphql-core python2-gridmap python2-guzzle-sphinx-theme python2-hdf4 python2-html5-parser python2-htseq python2-httpbin python2-ipykernel python2-ipyparallel python2-ipython python2-ipython-cluster-helper python2-ipywidgets python2-josepy python2-jupyter-client python2-jupyter-console python2-kivy python2-kombu python2-ledgerblue python2-libadalang python2-lzstring python2-mapnik python2-matplotlib python2-matplotlib-documentation python2-mechanicalsoup python2-mutagen python2-mwclient python2-nbconvert python2-nbxmpp python2-ndg-httpsclient python2-nose2 python2-notebook python2-notify2 python2-numpydoc python2-numpy-documentation python2-oauthlib python2-openid-cla python2-openid-teams python2-openpyxl python2-orator python2-os-client-config python2-os-testr python2-pandas python2-paramiko python2-parsedatetime python2-partd python2-pathpy python2-patsy python2-pendulum python2-pep517 python2-pgpdump python2-pika python2-plastid python2-plotly python2-py2neo python2-pybedtools python2-pyclipper python2-pyfakefs python2-pylibmc python2-pymysql python2-pynacl python2-pynamecheap python2-pyopenssl python2-pysnptools python2-pytest-xdist python2-radon python2-rauth python2-renpy python2-requests python2-requests-file python2-requests-mock python2-requests-oauthlib python2-requests-toolbelt python2-responses python2-roca-detect python2-rpython python2-rq python2-rst.linker python2-ruamel.yaml python2-s3transfer python2-scikit-learn python2-scipy python2-scripttest python2-seaborn python2-service-identity python2-setuptools-scm-git-archive python2-sh python2-shapely python2-sockjs-tornado python2-sphinx-cloud-sptheme python2-sphinxcontrib-programoutput python2-sphinx-repoze-autointerface python2-statsmodels python2-stem python2-stevedore python2-tables python2-terminado python2-tldextract python2-tornado python2-translate-toolkit python2-trollius-redis python2-twine python2-urlgrabber python2-urllib3 python2-utils python2-validators python2-warpedlmm python2-widgetsnbextension python2-wsgiproxy2 python2-xenon python2-yubikey-manager python2-zope-component python2-zope-configuration python2-zope-exceptions python2-zope-i18nmessageid python2-zope-location python2-zope-proxy python2-zope-schema python2-zope-security python2-zope-testrunner python-args python-aws-xray-sdk python-bbknn python-behave-web-api python-bigfloat python-btrees python-cachy python-clint python-codacy-coverage python-cypari2 python-daemux python-dendropy python-django-auth-ldap python-django-bulk-update python-django-classy-tags python-django-compressor python-django-contact-form python-django-debug-toolbar python-django-debug-toolbar-alchemy python-django-extensions python-django-filter python-django-haystack python-django-jinja python-django-logging-json python-django-mailman3 python-django-netfields python-django-redis python-djangorestframework python-django-rq python-django-sekizai python-django-statici18n python-django-url-filter python-docker python-drmaa python-duniterpy python-eliot python-enum34 python-eventlet python-faiss python-fakeredis python-flasgger python-flask-restplus python-flask-session python-flit python-funcparserlib python-graphene python-gridmap python-gyp python-hacking python-hdf4 python-html5-parser python-hy python-hyperkitty python-internetarchive python-ipykernel python-ipyparallel python-ipython-cluster-helper python-ipython-documentation python-ipywidgets python-jaraco-packaging python-jose python-jsonpickle python-jupyter-client python-jupyter-console python-jupyter-kernel-mgmt python-jupyter-kernel-test python-jupyter-protocol python-keyring python-keyrings.alt python-keystoneclient python-kivy python-ldap python-lfdfiles python-libsass python-logwrap python-mailman-hyperkitty python-mamba python-matplotlib-documentation python-matrix-synapse-ldap3 python-miniboa python-moto python-nautilus python-nbval python-ndg-httpsclient python-notebook python-numpy-documentation python-onnx python-ont-fast5-api python-openid-cla python-openid-teams python-orator python-os-client-config python-oslo.config python-oslo.context python-oslo.i18n python-oslo.log python-oslo.serialization python-oslosphinx python-oslo.utils python-os-testr python-owslib python-pafy python-parallel python-pari-jupyter python-pathpy python-pendulum python-persistent python-petsc4py python-pifpaf python-plotly python-py3dns python-pyacoustid python-pyclipper python-pydub python-pykafka python-pykka python-pylibmc python-pyramid python-pytest-arraydiff python-pytest-checkdocs python-pytest-django python-pytest-mpl python-pytest-shutil python-pytest-virtualenv python-pytidylib python-pyxb python-qdarkstyle python-qtconsole python-qtpy python-radon python-scripttest python-setools python-setuptools-scm-git-archive python-slepc4py python-socksipychain python-sphinx-copybutton python-stestr python-swiftclient python-symengine python-tempest-lib python-tortoise-orm python-translate-toolkit python-translation-finder python-trollius-redis python-trytond-account python-trytond-account-invoice python-trytond-account-invoice-stock python-trytond-account-product python-trytond-analytic-account python-trytond-company python-trytond-country python-trytond-currency python-trytond-party python-trytond-product python-trytond-purchase python-trytond-purchase-request python-trytond-stock python-trytond-stock-lot python-trytond-stock-supply python-txacme python-typing python-widgetsnbextension python-xattr python-xenon python-zope-component python-zope-configuration python-zope-copy python-zope-deferredimport python-zope-exceptions python-zope-i18nmessageid python-zope-location python-zope-proxy python-zope-schema python-zope-security python-zope-testrunner qutebrowser rapid-photo-downloader renpy reprotest ribodiff rtv silkaj solaar synapse syncthing-gtk tadbit taxtastic tbsp trezor-agent tuir unknown-horizons virtaal xpra you-get youtube-dl youtube-dl-gui --2od4rfdDquHCcG1s--