From: "King, Spencer via Guix-patches" via <guix-patches@gnu.org>
To: 71150@debbugs.gnu.org
Subject: [bug#71150] [PATCH] gnu: bwa: Update to 0.7.18.
Date: Thu, 23 May 2024 17:26:41 +0000 [thread overview]
Message-ID: <CH3PR02MB974625A6DB898EFB8631EE5890F42@CH3PR02MB9746.namprd02.prod.outlook.com> (raw)
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This new release of bwa adds support for ARM64 processors. I needed to change the origin from a url to a git reference since there isn't a release tarball for this version. There is only the auto-generated tarball which the linter does not like.
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From 343836f39323d7dd8b3ac6c55e4abf0f0937ec4d Mon Sep 17 00:00:00 2001
Message-Id: <343836f39323d7dd8b3ac6c55e4abf0f0937ec4d.1716484788.git.spencer.king@geneoscopy.com>
From: Spencer King <spencer.king@geneoscopy.com>
Date: Thu, 23 May 2024 17:03:34 +0000
Subject: [PATCH] gnu: bwa: Update to 0.7.18.
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.18.
Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
---
gnu/packages/bioinformatics.scm | 22 +++++++++++-----------
1 file changed, 11 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b7e8e54de2..a9a63f30d1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -26,6 +26,7 @@
;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com>
+;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -4126,15 +4127,16 @@ (define-public tophat
(define-public bwa
(package
(name "bwa")
- (version "0.7.17")
+ (version "0.7.18")
(source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/lh3/bwa/releases/download/v"
- version "/bwa-" version ".tar.bz2"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/lh3/bwa")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "1zfhv2zg9v1icdlq4p9ssc8k01mca5d1bd87w71py2swfi74s6yy"))))
+ "1vf3iwkzxqkzhcfz2q3qyvcv3jrvbb012qy21pfgjl8lv20ywfr1"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ;no "check" target
@@ -4152,12 +4154,10 @@ (define-public bwa
(install-file "libbwa.a" lib)
(install-file "README.md" doc)
(install-file "bwa.1" man))))
- ;; no "configure" script
- (delete 'configure))))
+ ;; no "configure" script
+ (delete 'configure))))
(inputs (list zlib))
- ;; Non-portable SSE instructions are used so building fails on platforms
- ;; other than x86_64.
- (supported-systems '("x86_64-linux"))
+ (supported-systems '("x86_64-linux" "aarch64-linux"))
(home-page "https://bio-bwa.sourceforge.net/")
(synopsis "Burrows-Wheeler sequence aligner")
(description
base-commit: c3fe248e6987025c7d4ffdb6da0a3fc77f5a3f39
--
2.34.1
next reply other threads:[~2024-05-23 17:28 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2024-05-23 17:26 King, Spencer via Guix-patches via [this message]
2024-07-30 9:08 ` bug#71150: [PATCH] gnu: bwa: Update to 0.7.18 Zheng Junjie
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