From mboxrd@z Thu Jan 1 00:00:00 1970 From: Laura Lazzati Subject: Re: [outreach] Help trying to create R package Date: Fri, 19 Oct 2018 15:37:13 -0300 Message-ID: References: <20181016074412.54757b18@alma-ubu> <20181016082350.75757e6b@alma-ubu> <20181017001851.71543cc9@alma-ubu> <20181017091750.1c408b8d@alma-ubu> <20181018085424.541e9287@alma-ubu> <87va5zktpa.fsf@elephly.net> <87r2gml8ec.fsf@elephly.net> Mime-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:49743) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gDZej-0005hO-FW for guix-devel@gnu.org; Fri, 19 Oct 2018 14:37:54 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gDZei-0001gP-IC for guix-devel@gnu.org; Fri, 19 Oct 2018 14:37:53 -0400 Received: from mail-pf1-x430.google.com ([2607:f8b0:4864:20::430]:43304) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1gDZeh-0001db-Nm for guix-devel@gnu.org; Fri, 19 Oct 2018 14:37:52 -0400 Received: by mail-pf1-x430.google.com with SMTP id p24-v6so16848308pff.10 for ; Fri, 19 Oct 2018 11:37:51 -0700 (PDT) In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: =?UTF-8?Q?G=C3=A1bor_Boskovits?= Cc: Guix-devel On Fri, Oct 19, 2018 at 4:29 AM G=C3=A1bor Boskovits = wrote: > > Hello Ricardo, > > Ricardo Wurmus ezt =C3=ADrta (id=C5=91pont: 2018. ok= t. 19., P 9:10): >> >> >> Hi Laura, >> >> > with guix environment --pure guix --ad-hoc coreutils findutils which (= or -C) >> > I get, the output: >> > Command 'lesspipe' is available in the following places >> > * /bin/lesspipe >> > * /usr/bin/lesspipe >> > The command could not be located because '/bin:/usr/bin' is not >> > included in the PATH environment variable. >> > lesspipe: command not found >> >> This is because your shell initialization code (e.g. to set up the >> prompt) refers to lesspipe. You can ignore this or remove the fancy >> initialization. >> >> > There, I run which guix and get: >> > which: no guix in >> > (/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/bin:/gnu/store/kh= k3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/sbin) >> >> That=E2=80=99s because =E2=80=9C--pure=E2=80=9D resets the PATH; that=E2= =80=99s by design. The only >> problem you have is that your Guix is located elsewhere. But why do you >> need Guix itself inside of an environment to build Guix? >> >> The point of using =E2=80=9Cguix environment --pure guix=E2=80=9D is onl= y to enter a >> clean environment containing everything you need to build Guix from >> source. So once you=E2=80=99re inside of this environment you can run t= he >> bootstrap and configure scripts, and run make to compile the sources. >> >> To *use* that Guix you just built you need to use =E2=80=9C./pre-inst-en= v guix=E2=80=9D >> from the source directory. >> >> > The closest I got was by setting: >> > PATH=3D$PATH:/usr/bin/:/bin >> > PATH=3D$PATH:/usr/local/bin >> >> This defeats the purpose of using =E2=80=9C--pure=E2=80=9D as these dire= ctories contain >> all sorts of things on a foreign distro, so you lose control over the >> environment. I am glad to tell you that I have followed all the commands, I will copy some of them here just in case, and saved the output in my daily journal of everything :) guix environment --pure guix --ad-hoc coreutils findutils which ./bootstrap ./configure --localstatedir=3D/var make echo $? ->got 0 which guix -> got no guix in (/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/bin:/gnu/st= ore/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/sbin) ./pre-inst-env guix package --help -> worked fine! ./pre-inst-env guix package -i hello -> the same ./pre-inst-env guix package -i emacs export PATH=3D"/home/laura/.guix-profile/bin${PATH:+:}$PATH" export INFOPATH=3D"/home/laura/.guix-profile/share/info${INFOPATH:+:}$INFOP= ATH" (with this two exports, I could run hello and emacs without problems) ./pre-inst-env guix package -i nss-certs Played a lot with ./pre-inst-env guix build r-aspi and emacs gnu/packages/cran.scm until I found out that there were syntax errors, mismatches in parenthesis and so on, and in the last ./pre-inst-env guix build r-aspi got: ;;; note: source file /home/laura/guix/gnu/packages/cran.scm ;;; newer than compiled /home/laura/guix/gnu/packages/cran.go (still that) but: successfully built /gnu/store/bmapswnk9li1nscfpirgzsy3npw9hyql-r-aspi-0.2.0= .drv /gnu/store/a3apqwf4hy67ms462hn802gk89x99mzh-r-aspi-0.2.0 I am following the contribution guide now, to send the patch, I ran ./pre-inst-env guix lint r-aspi ;;; note: source file /home/laura/guix/gnu/packages/cran.scm ;;; newer than compiled /home/laura/guix/gnu/packages/cran.go fetching CVE database for 2018... fetching CVE database for 2017... fetching CVE database for 2016... fetching CVE database for 2015... Is this output OK? > > > Sorry, my bad, I missed that. > >> >> -- >> Ricardo > > g_bor Regards! Laura