From mboxrd@z Thu Jan 1 00:00:00 1970 From: Laura Lazzati Subject: Re: [outreach] Help trying to create R package Date: Fri, 19 Oct 2018 00:47:59 -0300 Message-ID: References: <20181016074412.54757b18@alma-ubu> <20181016082350.75757e6b@alma-ubu> <20181017001851.71543cc9@alma-ubu> <20181017091750.1c408b8d@alma-ubu> <20181018085424.541e9287@alma-ubu> <87va5zktpa.fsf@elephly.net> Mime-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:50883) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gDLmB-0005xu-ER for guix-devel@gnu.org; Thu, 18 Oct 2018 23:48:41 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gDLm9-0007PT-R2 for guix-devel@gnu.org; Thu, 18 Oct 2018 23:48:39 -0400 Received: from mail-pf1-x441.google.com ([2607:f8b0:4864:20::441]:33114) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1gDLm9-0007Np-Ge for guix-devel@gnu.org; Thu, 18 Oct 2018 23:48:37 -0400 Received: by mail-pf1-x441.google.com with SMTP id 78-v6so13485901pfq.0 for ; Thu, 18 Oct 2018 20:48:37 -0700 (PDT) In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: rekado@elephly.net Cc: Guix-devel On Thu, Oct 18, 2018 at 10:05 PM Laura Lazzati wrote: > > On Thu, Oct 18, 2018 at 3:17 PM Laura Lazzati > wrote: > > > > On Thu, Oct 18, 2018 at 3:15 PM Ricardo Wurmus wro= te: > > > > > > > > > Hi Laura, > > > > > > > configure: checking for guile 2.2 > > > > configure: found guile 2.2 > > > > checking for guile-2.2... /usr/bin/guile-2.2 > > > > checking for Guile version >=3D 2.2... 2.2.3 > > > > checking for guild-2.2... no > > > > checking for guile-config-2.2... no > > > > checking for guile-tools-2.2... no > > > > configure: error: 'guild' binary not found; please check your > > > > guile-2.x installation. > > > > > > I recommend using =E2=80=9Cguix environment --pure guix=E2=80=9D when= on a foreign > > > distribution. > > Yes, I am trying that right now :) I'll let you know after reading > > Invoking guix environment and trying that. Hope this works > > > > I have tried lots of things today, not successfully. > > with guix environment guix, I get the same output that I get without > using guix environment (I mean, it uses the installed guix that I tend > to use generally) > the output of which guix in both cases is: > /home/laura/.config/guix/current/bin/guix > > with guix environment --pure guix --ad-hoc coreutils findutils which (or = -C) > I get, the output: > Command 'lesspipe' is available in the following places > * /bin/lesspipe > * /usr/bin/lesspipe > The command could not be located because '/bin:/usr/bin' is not > included in the PATH environment variable. > lesspipe: command not found > There, I run which guix and get: > which: no guix in > (/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/bin:/gnu/store/khk3l= px1li9y5zxzdppn9wi4n5g1qsgs-profile/sbin) > > The closest I got was by setting: > PATH=3D$PATH:/usr/bin/:/bin > PATH=3D$PATH:/usr/local/bin > And since I still got the issue with guile, I went to > /usr/bin/ > and created a symlink > sudo ln -s /gnu/store/p9wm67w3rfw3hlb9iljgvsfn84mz4w9d-guile-2.2.4 guile-= 2.2.4 > (setting guile-2.2 that whas already there to a hidden file) > Then the ./configure --localstatedir=3D/var > Worked fine, as well as the make (echo $? of both 0) > There, the result of which guix is: > /usr/local/bin/guix > ( a symlink to -> /var/guix/profiles/per-user/root/guix-profile/bin/guix) > I could run the ./pre-inst-env guix package -i hello, took a while but wo= rked. > Complained about having to do: > export PATH=3D"/home/laura/.guix-profile/bin${PATH:+:}$PATH" > Did so. > And finally I appended my r-aspi definition to cran.scm > However, everything went wrong when trying to run: (sorry, the output > is long and I also get the same output with ./pre-inst-env lint > r-aspi) > ./pre-inst-env guix build r-aspi > ;;; note: source file /home/laura/guix/gnu/packages/cran.scm > ;;; newer than compiled /home/laura/guix/gnu/packages/cran.go > guix build: warning: failed to load '(gnu packages abiword)': > exception thrown: # #\t string: "a7izhueiqsdjs2eo7dfyb63cqje7mbqz6ennlyoynxxucbhpdnta"] I have an update here, sorry, I can't help trying to figure out what's wrong. In the definition of my r-aspi, I found that the base32 was not well calculated, and I have already corrected that. Now this line does not appear anymore when throwing the same commands. the other warnings do. and the In procedure module-lookup: Unbound variable: continue too. I also tried generating the new cran.go with guild compile cran.scm but the output was really awful. If you need it, when you answer back I paste it. > 262f6c0> > guix build: warning: failed to load '(gnu packages android)': > In procedure module-lookup: Unbound variable: googletest > guix build: warning: failed to load '(gnu packages avr)': > In procedure module-lookup: Unbound variable: binutils > guix build: warning: failed to load '(gnu packages axoloti)': > In procedure module-lookup: Unbound variable: gcc-4.9 > guix build: warning: failed to load '(gnu packages bioconductor)': > In procedure module-lookup: Unbound variable: perl-module-build > guix build: warning: failed to load '(gnu packages bootloaders)': > no binding `bc' in module (gnu packages algebra) > guix build: warning: failed to load '(gnu packages chemistry)': > In procedure module-lookup: Unbound variable: python2-numpy > guix build: warning: failed to load '(gnu packages commencement)': > In procedure module-lookup: Unbound variable: gnu-make > guix build: warning: failed to load '(gnu packages debug)': > In procedure module-lookup: Unbound variable: gnu-make > guix build: warning: failed to load '(gnu packages display-managers)': > In procedure module-lookup: Unbound variable: gpgme > guix build: warning: failed to load '(gnu packages games)': > In procedure module-lookup: Unbound variable: unzip > guix build: warning: failed to load '(gnu packages image-viewers)': > In procedure module-lookup: Unbound variable: curl > guix build: warning: failed to load '(gnu packages license)': > In procedure module-lookup: Unbound variable: perl > guix build: warning: failed to load '(gnu packages make-bootstrap)': > In procedure module-lookup: Unbound variable: coreutils > guix build: warning: failed to load '(gnu packages maven)': > In procedure module-lookup: Unbound variable: java-plexus-container-defau= lt > guix build: warning: failed to load '(gnu packages syndication)': > In procedure module-lookup: Unbound variable: curl > guix build: warning: failed to load '(gnu packages unrtf)': > In procedure module-lookup: Unbound variable: coreutils > guix build: error: r-aspi: unknown package > > > > > > > > > > Ricardo > > > > Regards, > Laura Regards, Laura