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To: Philippe Veber , help-guix@gnu.org Received-SPF: pass client-ip=2a00:1450:4864:20::334; envelope-from=philippe.veber@gmail.com; helo=mail-wm1-x334.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, HTML_MESSAGE=0.001, PDS_BTC_ID=0.036, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Content-Filtered-By: Mailman/MimeDel 2.1.29 X-BeenThere: help-guix@gnu.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: help-guix-bounces+larch=yhetil.org@gnu.org Sender: help-guix-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.71 X-Spam-Score: 2.71 X-Migadu-Queue-Id: 52FE63805B X-Migadu-Scanner: mx13.migadu.com X-TUID: 02SjGYA3FFex Turns out the culprit's not XDG_DATA_DIRS, but GI_TYPELIB_PATH. I don't see the problem anymore if I comment the line exporting this variable in my profile. It seems the issue's been known for some time now: https://issues.guix.gnu.org/35308 >From this issue it seems that there used to be a problem with both XDG_DATA_DIRS and GI_TYPELIB_PATH, but the fact that only GI_TYPELIB_PATH generates the problem now suggests that part of the issue has been fixed (see maybe https://issues.guix.gnu.org/56050). Unsetting XDG_DATA_DIRS and GI_TYPELIB_PATH in .profile like Nicolas Goaziou suggested works for me. I still have not a clear idea what should be done to fix the problem in a satisfying way, but I'm willing to test suggestions. Le mer. 10 janv. 2024 =C3=A0 10:58, Efraim Flashner = a =C3=A9crit : > On Tue, Jan 09, 2024 at 03:00:37PM +0100, Philippe Veber wrote: > > Thanks Efraim! > > > > Here's what I get: > > > > $guix package --list-installed > > python-ete3 3.1.3 out > > /gnu/store/wlnq236xg7r30qxljysfv4la0qg3x46y-python-ete3-3.1.3 > > tracecomp 1.6-1.2661e95 out > > /gnu/store/zkym5pzkf9iv47pwcgqmjm78b6s9lyh0-tracecomp-1.6-1.2661e95 > > coevol 1.6-1.f3f23f0 out > > /gnu/store/0qmnqipqrmckd880gfxhlh2359lcd91j-coevol-1.6-1.f3f23f0 > > r-treeio 1.26.0 out > > /gnu/store/17x3b51f35a2dzhzg1kzw4gxc356a4i1-r-treeio-1.26.0 > > r-tidyverse 2.0.0 out > > /gnu/store/8z6bqph9r2920m9ql52piikfv0x07inv-r-tidyverse-2.0.0 > > r-tidytree 0.4.5 out > > /gnu/store/a0s5bqkx7i52cavwp932z5fsmjqxw27j-r-tidytree-0.4.5 > > r-mvmorph 1.1.9 out > > /gnu/store/iz92idl1856rvl45lzybmy78vv8b6idr-r-mvmorph-1.1.9 > > r-minimal 4.3.2 out > > /gnu/store/m1hhz3dqgir7jhk6anb1996pf1j2fbbx-r-minimal-4.3.2 > > r-ggtreeextra 1.12.0 out > > /gnu/store/qdv53igafjgd7xm5pw68vj42w0ij8pyr-r-ggtreeextra-1.12.0 > > r-ggtree 3.10.0 out > > /gnu/store/xjivg7vvljdm3vqzcwjkpas1p64lh117-r-ggtree-3.10.0 > > r-ggpubr 0.6.0 out > > /gnu/store/2kwfwx94si3b82dghyak14kbb6szyb7m-r-ggpubr-0.6.0 > > r-ggimage 0.3.3 out > > /gnu/store/25xr3pzldf5q6z6q2baic5hwaisvcr6h-r-ggimage-0.3.3 > > r-ggh4x 0.2.6 out > > /gnu/store/0mzs0h4di8dazkvf6jbama59wkazzxcd-r-ggh4x-0.2.6 > > r-guix-install 1.0.0 out > > /gnu/store/liihylvgbwkd5s2gvpcvhjp206x98klg-r-guix-install-1.0.0 > > r-fishdata 1.0.1 out > > /gnu/store/r8jnfq3ichak6p1g46dkycayxkz483bq-r-fishdata-1.0.1 > > r-fsadata 0.4.1 out > > /gnu/store/5x4f7qa9y9xb1j046a8g58hc6ccad1f5-r-fsadata-0.4.1 > > > > where some of the packages are from custom definitions I wrote. But > > checking this list, I immediately suspected python-ete3, which has > > dependencies on window manager-related packages : > > > > $guix show python-ete3 > > name: python-ete3 > > version: 3.1.3 > > outputs: > > + out: tout > > systems: x86_64-linux > > dependencies: python-lxml@4.9.1 python-numpy@1.23.2 python-pyqt@5.15.9 > > python-pytest@7.1.3 python-scipy@1.10.1 > > [...] > > $guix graph python-ete3 | grep xdg > > "139718079320768" [label =3D "xdg-utils@1.1.3", shape =3D box, fontna= me =3D > > sans]; > > "139718079372032" [label =3D "xdg-user-dirs@0.17", shape =3D box, > fontname =3D > > sans]; > > "139718058333568" [label =3D "xdg-dbus-proxy@0.1.2", shape =3D box, > fontname > > =3D sans]; > > > > and indeed, after a guix remove python-ete3, everything's back to norma= l. > > > > With python-ete3 installed, here's the environment generated by guix: > > > > $guix package --search-paths -p .guix-profile-bck > > export PATH=3D"/var/guix/profiles/per-user/pveber/guix-profile/bin" > > export > > > R_LIBS_SITE=3D"/var/guix/profiles/per-user/pveber/guix-profile/site-libra= ry/" > > export > > > GUIX_PYTHONPATH=3D"/var/guix/profiles/per-user/pveber/guix-profile/lib/py= thon3.10/site-packages" > > export > > > GI_TYPELIB_PATH=3D"/var/guix/profiles/per-user/pveber/guix-profile/lib/gi= repository-1.0" > > export > XDG_DATA_DIRS=3D"/var/guix/profiles/per-user/pveber/guix-profile/share" > > > > Seeing that I tried to fiddle with the variable XDG_DATA_DIRS but I > didn't > > get anywhere. Let me know if I can give you more details, thanks again! > > > > Le mar. 9 janv. 2024 =C3=A0 07:49, Efraim Flashner a > > =C3=A9crit : > > > > > On Sun, Jan 07, 2024 at 05:44:59PM +0100, Philippe Veber wrote: > > > > Hi all, > > > > > > > > I'm using guix on a Debian 12 machine (I installed guix through > apt), and > > > > starting recently I can't log in anymore via gdm: after entering my > > > > password the display freezes (blank screen, mouse pointer is > displayed > > > but > > > > I can't move it) and after some time I'm back at login screen. If I > move > > > > .guix-profile to some other name, everything works correctly. > > > > > > > > The thing is, I have no idea how to investigate this. /var/log/gdm3 > is > > > > empty, and I don't know whereelse to look. Any idea? > > > > > > Can you share with us a list of the packages you've installed through > > > Guix? That might help us find if some environment variable is causin= g > > > problems. > > > > > > Also the output of `guix package --search-paths -p ~/.guix-profile` (= or > > > -p /path/to/where/you/moved/dot-guix-profile). > > > > > It looks like the XDG_DATA_DIRS from the package interfered with the > XDG_DATA_DIRS needed by Debian. I'm not sure I have a suggestion for > that though. > > -- > Efraim Flashner =D7=A8=D7=A0=D7=A9=D7=9C=D7= =A4 =D7=9D=D7=99=D7=A8=D7=A4=D7=90 > GPG key =3D A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 > Confidentiality cannot be guaranteed on emails sent or received unencrypt= ed >