From: Sharlatan Hellseher <sharlatanus@gmail.com>
To: 56835@debbugs.gnu.org
Subject: [bug#56835] [PATCH 2/2]: gnu: Add pynbody
Date: Fri, 29 Jul 2022 21:30:13 +0100 [thread overview]
Message-ID: <CAO+9K5p3xMbpk2q0WqGR6t69sDJ=CCdwf+F7dGybq972fC3-oA@mail.gmail.com> (raw)
In-Reply-To: <CAO+9K5ry01FPrmN7kWWuFXMq7X7s0BGH5ifqzbx2zT75UcqW4w@mail.gmail.com>
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… наш разум - превосходная объяснительная машина которая способна
найти смысл почти в чем угодно, истолковать любой феномен, но
совершенно не в состоянии принять мысль о непредсказуемости.
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From d245a43520d37e33615d825338d1f55dda36fce2 Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Fri, 29 Jul 2022 21:17:50 +0100
Subject: [PATCH 2/2] gnu: Add pynbody
* gnu/packages/astronomy.scm: (python-pynbody): New variable.
---
gnu/packages/astronomy.scm | 68 ++++++++++++++++++++++++++++++++++++++
1 file changed, 68 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e84eb188ff..3b4ded5728 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1606,6 +1606,74 @@ (define-public python-pyerfa
functions, so that they can be called with scalar or array inputs.")
(license license:bsd-3)))
+(define-public python-pynbody
+ (package
+ (name "python-pynbody")
+ (version "1.2.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pynbody" version))
+ (sha256
+ (base32 "1jxwk2s4qz1znvyak2lj7ld01kl1jh87xp81ki7a8dz1gcy93fkx"))))
+ (build-system python-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'disable-tests-require-testdata
+ (lambda _
+ ;; Disable tests which need to download additional 1.0GiB+
+ ;; of test data archive from
+ ;; http://star.ucl.ac.uk/~app/testdata.tar.gz
+ ;; https://github.com/pynbody/pynbody/blob/ \
+ ;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
+ ;; .github/workflows/build-test.yaml#L41
+ (with-directory-excursion "tests"
+ (for-each delete-file
+ '("gravity_test.py"
+ "adaptahop_test.py"
+ "ahf_halos_test.py"
+ "array_test.py"
+ "bridge_test.py"
+ "family_test.py"
+ "partial_tipsy_test.py"
+ "snapshot_test.py"
+ "test_profile.py"
+ "gadget_test.py"
+ "gadgethdf_test.py"
+ "grafic_test.py"
+ "halotools_test.py"
+ "nchilada_test.py"
+ "ramses_new_ptcl_format_test.py"
+ "ramses_test.py"
+ "rockstar_test.py"
+ "sph_image_test.py"
+ "sph_smooth_test.py"
+ "subfind_test.py"
+ "subfindhdf_gadget4_test.py"
+ "tipsy_test.py")))))
+ (replace 'check
+ (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (setenv "HOME" "/tmp")
+ (invoke "pytest" "-vv")))))))
+ (native-inputs
+ (list python-pandas python-pytest))
+ (propagated-inputs
+ (list python-cython
+ python-h5py
+ python-matplotlib
+ python-numpy
+ python-posix-ipc
+ python-scipy))
+ (home-page "https://pynbody.github.io/pynbody/index.html")
+ (synopsis "Light-weight astronomical N-body/SPH analysis for python")
+ (description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic
+astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
+N-Chilada and RAMSES AMR outputs.")
+ (license license:gpl3+)))
+
(define-public python-sep
(package
(name "python-sep")
--
2.36.1
next prev parent reply other threads:[~2022-07-29 20:31 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-07-29 20:28 [bug#56835] [PATCH 0/2]: gnu: Add pynbody (astronomy) Sharlatan Hellseher
2022-07-29 20:29 ` [bug#56835] [PATCH 1/2]: gnu: Add posic-ipc Sharlatan Hellseher
2022-07-29 20:30 ` Sharlatan Hellseher [this message]
2022-08-05 18:46 ` bug#56835: [PATCH 0/2]: gnu: Add pynbody (astronomy) Efraim Flashner
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