From mboxrd@z Thu Jan 1 00:00:00 1970 From: zimoun Subject: Re: Move r-{desolve, quadprog, pracma, subplex} from maths.scm to cran.scm Date: Tue, 10 Dec 2019 00:25:58 +0100 Message-ID: References: <871ru0c6iq.fsf@elephly.net> Mime-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Return-path: Received: from eggs.gnu.org ([2001:470:142:3::10]:45661) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ieSPs-00014g-JW for guix-devel@gnu.org; Mon, 09 Dec 2019 18:26:13 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ieSPr-0007jQ-Gh for guix-devel@gnu.org; Mon, 09 Dec 2019 18:26:12 -0500 Received: from mail-qk1-x732.google.com ([2607:f8b0:4864:20::732]:37885) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1ieSPr-0007jE-D0 for guix-devel@gnu.org; Mon, 09 Dec 2019 18:26:11 -0500 Received: by mail-qk1-x732.google.com with SMTP id m188so14822767qkc.4 for ; Mon, 09 Dec 2019 15:26:11 -0800 (PST) In-Reply-To: <871ru0c6iq.fsf@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ricardo Wurmus Cc: Guix Devel Hi Ricarco On Fri, 22 Nov 2019 at 15:47, Ricardo Wurmus wrote: > PS: I also think that CRAN things in bioinformatics.scm should be moved > to cran.scm, and even some or all of the R stuff in statistics.scm. > (Same applies to Bioconductor packages, which should end up in > bioconductor.scm where possible.) I am working on that. Let consider some quick stats with "grep". 1. Currently, the file bioconductor.scm contains 4 packages with 'cran-uri' and git blames you. :-) Well, the 4 commits are: : a207bca2ad gnu: r-codedepends: Move from cran to bioconductor. : 3a0babacdc gnu: Add r-htscluster. : 7ed869f796 gnu: Add r-nbpseq. : 80eb01c776 gnu: r-gkmsvm: Move to (gnu packages bioconductor). with some comments as --8<---------------cut here---------------start------------->8--- ;; This is a CRAN package, but it uncharacteristically depends on a ;; Bioconductor package --8<---------------cut here---------------end--------------->8--- Do you remember a special motivation? 2. The second point is that the file statistics.scm contains 227 packages and 206 are cran-uri. And the file cran.scm already contains 602 packages, so it will be almost as python-xyz.scm is. Why not. Then, this file statistics.scm will be almost empty and I propose instead to populate the files maths.scm, python-xyz.scm. What do you think? 3. It is a big move. Do you prefer - a commit per package, so more or less 300 commits? - or a commit bioconductor.scm->cran.scm, another statistics.scm->cran.scm, bioinformatics.scm->bioconductor.scm and bioconductor->bioinformatics.scm, etc.? Thank you for your insights. All the best, simon