From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ra Subject: Re: Re: [PATCH 2/2] gnu: multiqc: Update to 0.8. Date: Mon, 26 Dec 2016 10:45:54 +0000 Message-ID: References: <9924251a-d60c-6fd0-66fe-91a313ac016a@uq.edu.au> Mime-Version: 1.0 Content-Type: multipart/alternative; boundary=001a114425e04b387705448d71a5 Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:46518) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1cLSn9-0003nI-UB for guix-devel@gnu.org; Mon, 26 Dec 2016 05:46:08 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1cLSn9-00070o-2c for guix-devel@gnu.org; Mon, 26 Dec 2016 05:46:08 -0500 Received: from mail-wm0-x244.google.com ([2a00:1450:400c:c09::244]:34526) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1cLSn8-00070W-R6 for guix-devel@gnu.org; Mon, 26 Dec 2016 05:46:06 -0500 Received: by mail-wm0-x244.google.com with SMTP id c85so14400183wmi.1 for ; Mon, 26 Dec 2016 02:46:06 -0800 (PST) In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ben Woodcroft , "guix-devel@gnu.org" --001a114425e04b387705448d71a5 Content-Type: text/plain; charset=UTF-8 Hi Ben, thanks I will investigate. Does it mean that multiqc is in stand by for now ? On Fri, Dec 23, 2016 at 2:30 PM Ben Woodcroft wrote: > Hi Raoul, > > Thanks for the patches. > > On 19/12/16 07:36, Ra wrote: > > [PATCH] gnu: multiqc: Update to 0.8. > > is [PATCH 1/2] for this message, sorry for the mistake. > > Running multiqc without [PATCH 2/2] systems say that matplotlib > > requires nose>=0.11.1, so I added it to the propagated inputs. > I notice that 0.9 is out too, so I tried updating to that version. I > also added "python-nose" as a native-input rather than a > propagated-input since it is only used at build time. > > However, the tests fail with this error: > > FileNotFoundError: [Errno 2] No such file or directory: 'git' > > The check phase is still successful so it doesn't stop - this problem is > being fixed by others. I added a patch to ignore the FileNotFoundError, > but then after all that the tests fail. Would you mind investigating > further, perhaps by raising an issue on the multiqc GitHub? My efforts > so far are in the attached patch. > > Thanks, ben. > > --001a114425e04b387705448d71a5 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Hi Ben,
thanks I will investigate. Does it mean that m= ultiqc is in stand by for now ?

<= div dir=3D"ltr">On Fri, Dec 23, 2016 at 2:30 PM Ben Woodcroft <b.woodcroft@uq.edu.au> wrote:
<= /div>
Hi Raoul,

Thanks for the patches.

On 19/12/16 07:36, Ra wrote:
> [PATCH] gnu: multiqc: Update to 0.8.
> is [PATCH 1/2] for this message, sorry for the mistake.
> Running multiqc without [PATCH 2/2] systems say that matplotlib
> requires nose>=3D0.11.1, so I added it to the propagated inputs. I notice that 0.9 is out too, so I tried updating to that version. I
also added "python-nose" as a native-input rather than a
propagated-input since it is only used at build time.

However, the tests fail with this error:

FileNotFoundError: [Errno 2] No such file or directory: 'git'

The check phase is still successful so it doesn't stop - this problem i= s
being fixed by others. I added a patch to ignore the FileNotFoundError,
but then after all that the tests fail. Would you mind investigating
further, perhaps by raising an issue on the multiqc GitHub? My efforts
so far are in the attached patch.

Thanks, ben.

--001a114425e04b387705448d71a5--