From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ra Subject: Re: [PATCH] gnu: Add kallisto. Date: Thu, 19 Jan 2017 08:08:58 +0000 Message-ID: References: <87eg00mxp4.fsf@gmail.com> <877f5s6rf6.fsf@elephly.net> Mime-Version: 1.0 Content-Type: multipart/alternative; boundary=94eb2c07504046213c05466e0c38 Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:53671) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1cU7mS-0001v0-3Y for guix-devel@gnu.org; Thu, 19 Jan 2017 03:09:13 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1cU7mQ-0002IM-JT for guix-devel@gnu.org; Thu, 19 Jan 2017 03:09:12 -0500 Received: from mail-qt0-x22e.google.com ([2607:f8b0:400d:c0d::22e]:35244) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1cU7mQ-0002Hy-DN for guix-devel@gnu.org; Thu, 19 Jan 2017 03:09:10 -0500 Received: by mail-qt0-x22e.google.com with SMTP id x49so54834268qtc.2 for ; Thu, 19 Jan 2017 00:09:10 -0800 (PST) In-Reply-To: <877f5s6rf6.fsf@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ricardo Wurmus , Alex Vong Cc: guix-devel --94eb2c07504046213c05466e0c38 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Hi Ricardo, On Wed, Jan 18, 2017 at 9:31 PM Ricardo Wurmus wrote: > > Alex Vong writes: > > > Looking at the license text: > > > > Copyright =C2=A92015. The Regents of the University of California (Rege= nts). > All > > Rights Reserved. Permission to use, copy, modify, and distribute this > software > > and its documentation for educational and research not-for-profit > purposes, > > without fee and without a signed licensing agreement, is hereby granted= , > > provided that the above copyright notice, this paragraph and the > following two > > paragraphs appear in all copies, modifications, and distributions. > Contact The > > Office of Technology Licensing, UC Berkeley, 2150 Shattuck Avenue, Suit= e > 510, > > Berkeley, CA 94720-1620, (510) 643-7201, for commercial licensing > > opportunities. > > > > > > It seems the license is {fsf, dfsg} non-free because it does not allow > > commercial usage. More precisely, it violates freedom 0 (the freedom to > > run the program as you wish, for any purpose). > > Correct. Kallisto is non-free software. > > > Does anybody know of any fork or should we use an old version? > > I don=E2=80=99t know of any version that is free software. > Looking around, I saw that you are using Kallisto at BIMSB and you have other software I need (latest rsem); Other software I want to work/port to guix are https://github.com/tderrien/FEELnc, https://github.com/Teichlab/tracer ( and Trinity). Does it make sense to contribute to https://github.com/BIMSBbioinfo/ or do you suggest to go with a personal/independent repo ? -- Ra > -- > Ricardo > > GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC > https://elephly.net > > --94eb2c07504046213c05466e0c38 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Hi Ricardo,

On Wed, Jan 18, 2017 at 9:31 PM Ricardo Wurmus <rekado@elephly.net> wrote:

Alex Vong <alexvong1995@gmail.com> writes:

> Looking at the license text:
>
> Copyright =C2=A92015. The Regents of the University of California (Reg= ents). All
> Rights Reserved. Permission to use, copy, modify, and distribute this = software
> and its documentation for educational and research not-for-profit purp= oses,
> without fee and without a signed licensing agreement, is hereby grante= d,
> provided that the above copyright notice, this paragraph and the follo= wing two
> paragraphs appear in all copies, modifications, and distributions. Con= tact The
> Office of Technology Licensing, UC Berkeley, 2150 Shattuck Avenue, Sui= te 510,
> Berkeley, CA 94720-1620, (510) 643-7201, for commercial licensing
> opportunities.
>
>
> It seems the license is {fsf, dfsg} non-free because it does not allow=
> commercial usage. More precisely, it violates freedom 0 (the freedom t= o
> run the program as you wish, for any purpose).

Correct.=C2=A0 Kallisto is non-free software.

> Does anybody know of any fork or should we use an old version?

I don=E2=80=99t know of any version that is free software.

Looking around, I saw that you are = using Kallisto at BIMSB and you have other software I need (latest rsem); = =C2=A0Other software I want to work/port to guix are https://github.com/tderrien/FEELnc, https://github.com/Teichlab/tracer= =C2=A0( and Trinity). Does it make sense to contribute to https://github.com/BIMSBbioinfo/=C2=A0or do= you suggest to go with a personal/independent repo ?=C2=A0

<= /div>
--
Ra


--
Ricardo

GPG: BCA6 89B6 3655 3801 C3C6=C2=A0 2150 197A 5888 235F ACAC
https://elephly.net

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