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Mon, 30 Jan 2023 16:57:06 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pMc98-0007Ho-G7 for bug-guix@gnu.org; Mon, 30 Jan 2023 16:57:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pMc98-0008KG-By for bug-guix@gnu.org; Mon, 30 Jan 2023 16:57:02 -0500 X-Loop: help-debbugs@gnu.org Subject: bug#61121: Cannot import IJulia in Julia Resent-From: Theodore Ehrenborg Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Mon, 30 Jan 2023 21:57:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61121 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: Simon Tournier Cc: 61121@debbugs.gnu.org, Efraim Flashner Received: via spool by 61121-submit@debbugs.gnu.org id=B61121.167511577731943 (code B ref 61121); Mon, 30 Jan 2023 21:57:02 +0000 Received: (at 61121) by debbugs.gnu.org; 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dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none) X-Migadu-Scanner: scn0.migadu.com X-Spam-Score: -0.98 X-Migadu-Queue-Id: 97E0B1AFD3 X-Migadu-Spam-Score: -0.98 X-TUID: zBN9BZmKePR3 --000000000000632ca905f382488a Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hi, Thanks for getting back with me. Gentoo appears to have fixed this bug by linking julia/cert.pem to the system's ca-certificates.crt. https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3D26b59330b5222996defa= 4536237e62404bf21168 Is there a way I could rebuild my own slightly modified Julia with a link like that? I understand that there's probably a good reason that Guix's Julia doesn't by default have cert.pem, but I would be pleased with a hacky custom solution if it made Jupyter notebooks work. Thanks, Theodore Den m=C3=A5n 30 jan. 2023 kl 12:47 skrev Simon Tournier : > Hi, > > I confirm this bug. > > On sam., 28 janv. 2023 at 13:45, Theodore Ehrenborg < > theodore.ehrenborg@gmail.com> wrote: > > > [ Info: Precompiling IJulia [7073ff75-c697-5162-941a-fcdaad2a7d2a] > > ERROR: LoadError: InitError: SystemError: opening file > > > "/gnu/store/npj8z0g9nx14wl22yphqfs2c5w4qk5jk-julia-1.8.3/share/julia/cert= .pem": > > No such file or directory > > [...] > > > I saw a very similar bug on Gentoo: > > [...] > > > (https://bugs.gentoo.org/888978) > > Well, that=E2=80=99s because Julia upstream does not take care about pack= agers; > as explicitly mentioned in this comment: > > > https://github.com/JuliaLang/MbedTLS.jl/pull/261#issuecomment-1346886879 > > The Guixer Cayetano Santos fixed upstream the issue for one package. > But as you are noticing it is not done for all. > > I do not know what is the best solution because the issue is coming from > Julia itself. > > Efraim, any suggestion? > > Cheers, > simon > --000000000000632ca905f382488a Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Hi,

Thanks for getting back = with me.

Gentoo appears to have fixed this bug by = linking julia/cert.pem to the system's ca-certificates.crt. https://gitweb.gentoo.org/repo/gentoo.git/commit/?id= =3D26b59330b5222996defa4536237e62404bf21168

Is there a way I could rebuild my own slightly modified Julia with a link= like that?

I understand that there's pro= bably a good reason that Guix's Julia doesn't by default have cert.= pem, but I would be pleased with a hacky custom solution if it made Jupyter= notebooks work.

Thanks,
Theodore

Den m=C3=A5n 30 jan. 2023 kl 12:47 skrev Simon Tournier <zimon.toutoune@gmail.com>:
=
Hi,

I confirm this bug.

On sam., 28 janv. 2023 at 13:45, Theodore Ehrenborg <theodore.ehrenborg@gmail.com= > wrote:

> [ Info: Precompiling IJulia [7073ff75-c697-5162-941a-fcdaad2a7d2a]
> ERROR: LoadError: InitError: SystemError: opening file
> "/gnu/store/npj8z0g9nx14wl22yphqfs2c5w4qk5jk-julia-1.8.3/share/ju= lia/cert.pem":
> No such file or directory

[...]

> I saw a very similar bug on Gentoo:

[...]

> (https://bugs.gentoo.org/888978)

Well, that=E2=80=99s because Julia upstream does not take care about packag= ers;
as explicitly mentioned in this comment:

=C2=A0 =C2=A0 https://github= .com/JuliaLang/MbedTLS.jl/pull/261#issuecomment-1346886879

The Guixer Cayetano Santos fixed upstream the issue for one package.
But as you are noticing it is not done for all.

I do not know what is the best solution because the issue is coming from Julia itself.

Efraim, any suggestion?

Cheers,
simon
--000000000000632ca905f382488a--