From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id 6HrVMCM4yV7lMAAA0tVLHw (envelope-from ) for ; Sat, 23 May 2020 14:50:11 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id uAiuLCM4yV5iVAAA1q6Kng (envelope-from ) for ; Sat, 23 May 2020 14:50:11 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 3E9979401AD for ; Sat, 23 May 2020 14:50:11 +0000 (UTC) Received: from localhost ([::1]:58786 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jcVTV-0003Tb-86 for larch@yhetil.org; Sat, 23 May 2020 10:50:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:34944) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jcVTO-0003TU-J8 for bug-guix@gnu.org; Sat, 23 May 2020 10:50:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:51984) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jcVTO-0003iu-90 for bug-guix@gnu.org; Sat, 23 May 2020 10:50:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1jcVTO-0006nR-4k for bug-guix@gnu.org; Sat, 23 May 2020 10:50:02 -0400 X-Loop: help-debbugs@gnu.org Subject: bug#41484: guix gc fails catastrophically if the disk has no space left Resent-From: Stefan Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Sat, 23 May 2020 14:50:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 41484 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 41484@debbugs.gnu.org X-Debbugs-Original-To: bug-guix@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.159024535726067 (code B ref -1); Sat, 23 May 2020 14:50:02 +0000 Received: (at submit) by debbugs.gnu.org; 23 May 2020 14:49:17 +0000 Received: from localhost ([127.0.0.1]:35297 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jcVSf-0006mM-3K for submit@debbugs.gnu.org; Sat, 23 May 2020 10:49:17 -0400 Received: from lists.gnu.org ([209.51.188.17]:32862) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jcVSd-0006mF-8E for submit@debbugs.gnu.org; Sat, 23 May 2020 10:49:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:34892) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jcVSd-0003SC-0V for bug-guix@gnu.org; Sat, 23 May 2020 10:49:15 -0400 Received: from mx009.vodafonemail.xion.oxcs.net ([153.92.174.39]:9590) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jcVSb-0003f6-Ah for bug-guix@gnu.org; Sat, 23 May 2020 10:49:14 -0400 Received: from vsmx002.vodafonemail.xion.oxcs.net (unknown [192.168.75.192]) by mta-6-out.mta.xion.oxcs.net (Postfix) with ESMTP id D45C76058C2 for ; Sat, 23 May 2020 14:49:05 +0000 (UTC) Received: from macbook-pro.kuh-wiese.my-router.de (unknown [2.206.141.243]) by mta-6-out.mta.xion.oxcs.net (Postfix) with ESMTPA id A22D4605BBE for ; Sat, 23 May 2020 14:49:03 +0000 (UTC) From: Stefan Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Message-Id: Date: Sat, 23 May 2020 16:49:02 +0200 Mime-Version: 1.0 (Mac OS X Mail 9.3 \(3124\)) X-Mailer: Apple Mail (2.3124) X-VADE-STATUS: LEGIT Received-SPF: pass client-ip=153.92.174.39; envelope-from=stefan-guix@vodafonemail.de; helo=mx009.vodafonemail.xion.oxcs.net X-detected-operating-system: by eggs.gnu.org: First seen = 2020/05/23 10:49:06 X-ACL-Warn: Detected OS = Linux 2.2.x-3.x (no timestamps) [generic] X-Spam_score_int: -41 X-Spam_score: -4.2 X-Spam_bar: ---- X-Spam_report: (-4.2 / 5.0 requ) BAYES_00=-1.9, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_PASS=-0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-Spam-Score: -1.3 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -2.3 (--) X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=none; spf=pass (aspmx1.migadu.com: domain of bug-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=bug-guix-bounces@gnu.org X-Spam-Score: -0.51 X-TUID: ceCfkpwn9kaJ Hi! While trying to build guix, my disk ran out of space. building = /gnu/store/w5l7acwbfvn0n8zj2v9by4j3jwbiimj9-guix-1.1.0-4.bdc801e.drv... 100% = [#########################################################################= ]note: build failure may have been caused by lack of free disk space builder for = `/gnu/store/w5l7acwbfvn0n8zj2v9by4j3jwbiimj9-guix-1.1.0-4.bdc801e.drv' = failed with exit code 1 build of = /gnu/store/w5l7acwbfvn0n8zj2v9by4j3jwbiimj9-guix-1.1.0-4.bdc801e.drv = failed View build log at = '/var/log/guix/drvs/w5/l7acwbfvn0n8zj2v9by4j3jwbiimj9-guix-1.1.0-4.bdc801e= .drv.bz2'. guix system: error: build of = `/gnu/store/w5l7acwbfvn0n8zj2v9by4j3jwbiimj9-guix-1.1.0-4.bdc801e.drv' = failed stefan@guix ~$ df -h / Dateisystem Gr=C3=B6=C3=9Fe = Benutzt Verf. Verw% Eingeh=C3=A4ngt auf :/volume5/RaspberryPi/Betriebssysteme/guix-system 1,4T 1,4T 0 = 100% / OK, well, there=E2=80=99s certainly a lot of garbage to collect. Due to = bad experiences in the past with the same situation, I first try to = collect only a little garbage. stefan@guix ~$ guix gc -F 100M guix gc: 100 MiB werden freigegeben finding garbage collector roots... note: can't create trash directory: creating directory = `/gnu/store/trash': No space left on device deleting garbage... [0%] deleting = '/gnu/store/g30aknl5yxk9jbpx2w7r5d0ak6xa5dl2-grub.cfg.lock' [0%] deleting = '/gnu/store/gidc7jrgbnvfm38qx4sc012kn9llgsvz-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04-collection.lock' [0%] deleting = '/gnu/store/9cpj3ir8fnsg5fiqs3x8alai713xzfz0-grub-keymap.de.lock' [0%] deleting = '/gnu/store/z08s3kwlnpqq6aa1v6ydni5qp2k7gkkb-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04' [0%] deleting = '/gnu/store/wv7iwd66q6n5775qa4hgaq9j9f2vyvl4-guix-1.1.0-4.bdc801e.lock' [0%] deleting = '/gnu/store/pab2ylsvas12824qw6j8q2h1qm3gh4x6-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04-union.lock' [0%] deleting = '/gnu/store/3ldyga22s6ym9g2pc9ycjwdwqb4i41v2-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04.lock' [0%] deleting = '/gnu/store/nfxgqhjyzwngiadn0l180hsbfnw3h4zy-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04-collection.lock' [0%] deleting = '/gnu/store/pab2ylsvas12824qw6j8q2h1qm3gh4x6-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04-union' [0%] deleting = '/gnu/store/dahbiixsbi1xhjiim9phl1vginm83bbm-grub.cfg.lock' [0%] deleting = '/gnu/store/61mwka1h77kkhylcs9jj4ij167qgfj39-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04.lock' [0%] deleting = '/gnu/store/q829h36vnwhbdlnzkgdrx2b51kp2mvdv-grub.cfg.lock' [0%] deleting = '/gnu/store/ragpi42x39sf5qwcmcmdn751fp4jfhmv-grub.cfg.lock' [0%] deleting = '/gnu/store/ncdsjfl245k6r7zym6w4sr9fyxrwhb38-grub.cfg.lock' [0%] deleting = '/gnu/store/z08s3kwlnpqq6aa1v6ydni5qp2k7gkkb-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04.lock' [0%] deleting = '/gnu/store/gidc7jrgbnvfm38qx4sc012kn9llgsvz-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04-collection' [0%] deleting = '/gnu/store/61mwka1h77kkhylcs9jj4ij167qgfj39-package-collection-grub-efi-r= aspberrypi-firmware-u-boot-rpi-3-2.04' [0%] deleting = '/gnu/store/hmy4ni005digrilzjf93wr9gaj5cq536-computed-files.lock' [0%] deleting = '/gnu/store/hmy4ni005digrilzjf93wr9gaj5cq536-computed-files' error (ignored): aborting transaction: cannot rollback - no transaction = is active guix gc: error: committing transaction: disk I/O error stefan@guix ~$=20 And that=E2=80=99s it. Repeating the guix gc command now results in this = immediate error: stefan@guix ~$ guix gc -F 100M warning: SQLite database is busy (SQLITE_PROTOCOL) guix gc: error: setting synchronous mode: locking protocol stefan@guix ~$ guix gc -F 100M warning: SQLite database is busy (SQLITE_PROTOCOL) guix gc: error: setting synchronous mode: locking protocol A reboot is needed to solve this SQLite error. But retrying all this = leads to the same situation again and again. It is kind of a deadlock. Well, as my guix system boots from an NFS share, in the past I solved = this by removing other stuff =E2=80=93 not related to guix =E2=80=93 = from the same disk. But right now there isn't unrelated stuff left to be = deleted.=20 I intend to remove the listed /gnu/store/=E2=80=A6 files by hand from = the NFS server side (which is much easier than removing the read-only = bind-mount.) Is this save at least? This is all on a Raspberry Pi 3b aarch64 machine, if it matters. Bye Stefan