From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: <65530@debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#65530] [PATCH] gnu: Add r-classdiscovery.
Date: Mon, 28 Aug 2023 12:34:18 +0000 [thread overview]
Message-ID: <97955c28991010a44b9c3579b1798fd38c20c6f5.1693226058.git.navid.afkhami@mdc-berlin.de> (raw)
In-Reply-To: <86f4a95a7ee7469b7e79f26a481700f6ba2d1395.1692962151.git.navid.afkhami@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-classdiscovery): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0e01f3115d..81fe723779 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13924,6 +13924,31 @@ (define-public r-enrichplot
All the visualization methods are developed based on ggplot2 graphics.")
(license license:artistic2.0)))
+;; This is a CRAN package, but it depends on Bioconductor packages and module.
+;; That is why we added it here!
+(define-public r-classdiscovery
+ (package
+ (name "r-classdiscovery")
+ (version "3.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "ClassDiscovery" version))
+ (sha256
+ (base32
+ "06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s"))))
+ (properties `((upstream-name . "ClassDiscovery")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-cluster r-mclust r-oompabase
+ r-oompadata))
+ (home-page "http://oompa.r-forge.r-project.org/")
+ (synopsis
+ "Classes and Methods for \"Class Discovery\" with Microarrays or Proteomics")
+ (description
+ "This package defines classes for \"class discovery\" in OOMPA project.
+Class discovery primarily consists of unsupervised clustering methods
+with attempts to assess their statistical significance.")
+ (license license:asl2.0)))
+
(define-public r-clusterprofiler
(package
(name "r-clusterprofiler")
base-commit: 4a49a89b09d07d96f4d6ef3c0ca93801370f7b20
--
2.34.1
next prev parent reply other threads:[~2023-08-28 12:35 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-08-25 11:15 [bug#65530] [PATCH] gnu: r-classdiscovery: Update to 3.4.0 Navid Afkhami
2023-08-28 12:34 ` Navid Afkhami [this message]
2023-08-28 15:10 ` bug#65530: " Ricardo Wurmus
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