From: Efraim Flashner <efraim@flashner.co.il>
To: 61148@debbugs.gnu.org
Cc: Efraim Flashner <efraim@flashner.co.il>
Subject: [bug#61148] [PATCH 4/5] gnu: Add libvcfh.
Date: Sun, 29 Jan 2023 15:12:37 +0200 [thread overview]
Message-ID: <9625ac451fe44ad7e2ea707e999cdc94d1389fce.1674997469.git.efraim@flashner.co.il> (raw)
In-Reply-To: <cover.1674997469.git.efraim@flashner.co.il>
* gnu/packages/bioinformatics.scm (libvcfh): New variable.
---
gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7b5d5c5e8c..05a07af7f3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15744,6 +15744,43 @@ (define-public wfa2-lib
architectures without adapting the code.")
(license license:expat))))
+(define-public libvcfh
+ (let ((commit "44b6580639a216a484fd96de75a839091f25768a")
+ (revision "1"))
+ (package
+ (name "libvcfh")
+ (version (git-version "0.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/edawson/libVCFH.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0jjqnzvai0849czh1hi5inm6y0228cw2s97i76f3vhyxj21mzvwm"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure) ; No configure script
+ (replace 'check
+ (lambda* (#:key tests? make-flags #:allow-other-keys)
+ (when tests?
+ (apply invoke "make" "test" make-flags)
+ (invoke "./test"))))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (install-file "libvcfh.a" (string-append out "/lib"))
+ (install-file "vcfheader.hpp"
+ (string-append out "/include/libvcfh"))))))))
+ (home-page "https://github.com/edawson/libVCFH")
+ (synopsis "Library for generating VCF headers")
+ (description "@code{libVCFH} is a set of data structures you can populate
+to print a VCf header. It should be in spec with VCF4.1/4.2.")
+ (license license:expat))))
+
(define-public smithwaterman
(let ((commit "2610e259611ae4cde8f03c72499d28f03f6d38a7"))
(package
--
Efraim Flashner <efraim@flashner.co.il> אפרים פלשנר
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next prev parent reply other threads:[~2023-01-29 13:13 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-29 13:09 [bug#61148] [PATCH 0/5] Update vcflib Efraim Flashner
2023-01-29 13:12 ` [bug#61148] [PATCH 1/5] gnu: intervaltree: Update to 0.1-1.aa59377 Efraim Flashner
2023-01-29 13:12 ` [bug#61148] [PATCH 2/5] gnu: tabixpp: Update to 1.1.2 Efraim Flashner
2023-01-29 13:12 ` [bug#61148] [PATCH 3/5] gnu: Add wfa2-lib Efraim Flashner
2023-01-29 13:12 ` Efraim Flashner [this message]
2023-01-29 13:12 ` [bug#61148] [PATCH 5/5] gnu: vcflib: Update to 1.0.6 Efraim Flashner
2023-10-27 12:38 ` [bug#61148] [PATCH 0/5] Update vcflib Ricardo Wurmus
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