* [bug#74497] [PATCH 01/46] gnu: Add cdf.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 02/46] gnu: Add julia-astroangles Sharlatan Hellseher
` (44 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (cdf): New variable.
Change-Id: I596dd3d1050e9276009d7e19fd9e9d1514510230
---
gnu/packages/astronomy.scm | 52 ++++++++++++++++++++++++++++++++++++++
1 file changed, 52 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1afdcd15a9..fc34cb7c40 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -460,6 +460,58 @@ (define-public ccfits
(license (license:non-copyleft "file://License.txt"
"See License.txt in the distribution."))))
+(define-public cdf
+ (package
+ (name "cdf")
+ (version "3.9.1")
+ (source
+ (origin
+ (method url-fetch)
+ ;; The archive version is esoteric here, meanwhile it's mentioned as
+ ;; normal semantic version in documentation (eg. 39_1), update the URL
+ ;; URL accordingly.
+ (uri (string-append
+ "https://spdf.gsfc.nasa.gov/pub/software/cdf/dist/"
+ "cdf39_1/linux/cdf39_1-dist-cdf.tar.gz" ))
+ (sha256
+ (base32 "08k6yv6gb0abhqp7dfysll5dgqc7kqbcvyiq4winnilazp6n1n01"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:test-target "test"
+ #:make-flags
+ #~(list "CURSES=no"
+ "ENV=gnu"
+ "FORTRAN=no"
+ "OS=linux"
+ "SHARED=yes"
+ (string-append "INSTALLDIR=" #$output)
+ "all")
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; no configure
+ (delete 'configure))))
+ (home-page "https://cdf.gsfc.nasa.gov/")
+ (synopsis "NASA's Common Data Format library and tools")
+ (description
+ "CDF or CDF Library is a scientific data management package which allows
+programmers and application developers to manage and manipulate scalar, vector,
+and multi-dimensional data arrays.
+
+The @acronym{CDF, Common Data Format} is a self-describing data abstraction for
+the storage and manipulation of multidimensional data in a platform- and
+discipline-independent fashion.
+
+This package provides library and binary utilities to manipulate CDF files.")
+ ;; This software may be copied or redistributed as long as it is not sold
+ ;; for profit, see <https://cdf.gsfc.nasa.gov/html/cdf_copyright.html>.
+ ;;
+ ;; There are no license agreements or costs involved in obtaining or using
+ ;; CDF, see <https://cdf.gsfc.nasa.gov/html/faq.html>.
+ (license (license:non-copyleft
+ "file://CDF_copyright.txt"
+ "See CDF_copyright.txt in the distribution."))))
+
(define-public celestia
(package
(name "celestia")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 02/46] gnu: Add julia-astroangles.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 01/46] gnu: Add cdf Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 03/46] gnu: Add python-kalepy Sharlatan Hellseher
` (43 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Efraim Flashner, Simon Tournier
* gnu/packages/julia-xyz.scm (julia-astroangles): New variable.
Change-Id: I7d4f977577b5e468eee313e216ed5f3d15f7e598
---
gnu/packages/julia-xyz.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 77385ee6e0..4aedf140bc 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -266,6 +266,31 @@ (define-public julia-arraylayouts
much wider class of matrix types than Julia's in-built @code{StridedArray}.")
(license license:expat)))
+(define-public julia-astroangles
+ (package
+ (name "julia-astroangles")
+ (version "0.1.3")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaAstro/AstroAngles.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1hd03kv1dppdzz7i9jv11f4rby5c21sdyhbcf3yvba9vnkkd1gz5"))))
+ (build-system julia-build-system)
+ (native-inputs
+ (list julia-stablerngs))
+ (propagated-inputs
+ (list julia-formatting))
+ (home-page "https://github.com/JuliaAstro/AstroAngles.jl")
+ (synopsis "Lightweight string parsing and representation of angles")
+ (description
+ "This package provides a lightweight string parsing and representation of
+angles.")
+ (license license:expat)))
+
(define-public julia-astrolib
(package
(name "julia-astrolib")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 03/46] gnu: Add python-kalepy.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 01/46] gnu: Add cdf Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 02/46] gnu: Add julia-astroangles Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 04/46] gnu: Add python-george Sharlatan Hellseher
` (42 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher
* gnu/packages/statistics.scm (python-kalepy): New variable.
Change-Id: I1bdaedd07f6149eeffe115eb30c17035a0ed75fd
---
gnu/packages/statistics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7089030fcc..2f48598f87 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -22,6 +22,7 @@
;;; Copyright © 2023 Troy Figiel <troy@troyfigiel.com>
;;; Copyright © 2024 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
+;;; Copyright © 2024 Sharlatan Hellseher <sharlatanus@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -2385,6 +2386,37 @@ (define-public python-patsy
;; and is covered by the PSFL.
(license (list license:bsd-2 license:psfl))))
+(define-public python-kalepy
+ (package
+ (name "python-kalepy")
+ (version "1.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "kalepy" version))
+ (sha256
+ (base32 "1a1d98vjkjs8zwx4hdss3gv67jyf25mmsrdc5qi8hpxminkizb6w"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-matplotlib
+ python-numba
+ python-numpy
+ python-scipy
+ python-six))
+ (home-page "https://github.com/lzkelley/kalepy")
+ (synopsis "Kernel Density Estimation (KDE) and sampling")
+ (description
+ "This package performs KDE operations on multidimensional data to
+calculate estimated PDFs (probability distribution functions), and resample
+new data from those PDFs.")
+ ;; MIT - setup.py
+ ;; GPL3+ - LICENSE
+ (license (list license:gpl3+ license:expat))))
+
(define-public python-lifelines
(package
(name "python-lifelines")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 04/46] gnu: Add python-george.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (2 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 03/46] gnu: Add python-kalepy Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 05/46] gnu: Add python-hasasia Sharlatan Hellseher
` (41 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher
* gnu/packages/statistics.scm (python-george): New variable.
Change-Id: Iff4de57093cbb954b7cb1e079ca9ef71b964e64e
---
gnu/packages/statistics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 2f48598f87..a96e92c780 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -63,6 +63,7 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
+ #:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
#:use-module (gnu packages cran)
#:use-module (gnu packages curl)
@@ -2158,6 +2159,34 @@ (define-public python-altair
"Vega-Altair is a declarative statistical visualization library for Python.")
(license license:expat)))
+(define-public python-george
+ (package
+ (name "python-george")
+ (version "0.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "george" version))
+ (sha256
+ (base32 "1zvbdq50ds820aj06lr2nrzwg121bkd9bg0aq83gvk7lf8yqgp4v"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list cmake-minimal
+ pybind11
+ python-pytest
+ python-scikit-build-core
+ python-setuptools-scm))
+ (propagated-inputs
+ (list python-numpy
+ python-scipy))
+ (home-page "https://george.readthedocs.io")
+ (synopsis "Fast Gaussian Processes for regression")
+ (description
+ "George is a fast and flexible Python library for Gaussian Process (GP)
+Regression, focused on efficiently evaluating the marginalized likelihood of a
+dataset under a GP prior, even as this dataset gets Big.")
+ (license license:expat)))
+
(define-public python-getdist
(package
(name "python-getdist")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 05/46] gnu: Add python-hasasia.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (3 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 04/46] gnu: Add python-george Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 06/46] gnu: Add python-cosmopy Sharlatan Hellseher
` (40 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-hasasia): New variable.
Change-Id: Iaf6df32037b9435da2731c080578042f1f03867c
---
gnu/packages/astronomy.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index fc34cb7c40..cac446a6a3 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2447,6 +2447,43 @@ (define-public python-halotools
from a cosmological simulation.")
(license license:bsd-3)))
+(define-public python-hasasia
+ (package
+ (name "python-hasasia")
+ (version "1.2.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "hasasia" version))
+ (sha256
+ (base32 "0vs3935c9cqwp44dycxfsv4p9q4zbw8i5z3946928yy0nqmj1aw7"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-numpy
+ python-scipy))
+ (home-page "https://github.com/Hazboun6/hasasia")
+ (synopsis "Pulsar timing array sensitivity curves calculation in Python")
+ (description
+ "This package provides a Python package to calculate gravitational-wave
+sensitivity curves for pulsar timing arrays.
+
+Features:
+@itemize
+@item pulsar transmission functions
+@item inverse-noise-weighted transmission functions
+@item individual pulsar sensitivity curves
+@item pulsar timing array sensitivity curves as characteristic strain, strain
+sensitivity or energy density
+@item power-law integrated sensitivity curves
+@item sensitivity sky maps for pulsar timing arrays
+@end itemize")
+ (license license:expat)))
+
(define-public python-healpy
(package
(name "python-healpy")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 06/46] gnu: Add python-cosmopy.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (4 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 05/46] gnu: Add python-hasasia Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 07/46] gnu: Add python-holodeck Sharlatan Hellseher
` (39 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-cosmopy): New variable.
Change-Id: I31e54ff51a2f18091baba449da3b00cdf5088b15
---
gnu/packages/astronomy.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index cac446a6a3..c85c00f8e2 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2013,6 +2013,34 @@ (define-public python-coolest
lens models possibly obtained from different modeling codes.")
(license license:gpl3)))
+(define-public python-cosmopy
+ (package
+ (name "python-cosmopy")
+ (version "3.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "cosmopy" version))
+ (sha256
+ (base32 "16xlg0vyzdx1h5h28y8az48nhiqvx43yd9s30g3rk9ywl4r1j6h8"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-click
+ python-future
+ python-numpy
+ python-scipy))
+ (home-page "https://github.com/lzkelley/cosmopy")
+ (synopsis "Cosmological calculator in Python")
+ (description
+ "This package provides a CLI and Python module to quickly calculate
+cosmological parameters e.g. redshift or luminosity-distance.")
+ (license license:expat)))
+
(define-public python-czml3
(package
(name "python-czml3")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 07/46] gnu: Add python-holodeck.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (5 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 06/46] gnu: Add python-cosmopy Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 08/46] gnu: Add python-vispy Sharlatan Hellseher
` (38 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-holodeck): New variable.
Change-Id: Ie6ba03ff9af00683f33f7ec11cd2915f4cfbd5e3
---
gnu/packages/astronomy.scm | 54 +++++++++++++++++++++++++++++++++++++-
1 file changed, 53 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c85c00f8e2..75f13a4bf6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5,7 +5,7 @@
;;; Copyright © 2019 by Amar Singh <nly@disroot.org>
;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in>
;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net>
-;;; Copyright © 2021-2023 Sharlatan Hellseher <sharlatanus@gmail.com>
+;;; Copyright © 2021-2024 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
@@ -71,6 +71,7 @@ (define-module (gnu packages astronomy)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages netpbm)
#:use-module (gnu packages onc-rpc)
+ #:use-module (gnu packages parallel)
#:use-module (gnu packages perl)
#:use-module (gnu packages photo)
#:use-module (gnu packages pkg-config)
@@ -2571,6 +2572,57 @@ (define-public python-healpy
scheme and builds with the HEALPix C++ library.")
(license license:gpl2+)))
+(define-public python-holodeck
+ (package
+ (name "python-holodeck")
+ (version "1.5.2")
+ (source
+ (origin
+ (method git-fetch) ; no tests in the PyPI tarball
+ (uri (git-reference
+ (url "https://github.com/nanograv/holodeck")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0jz54fb6yyling2a756qqahixpn1wgxmhhqmv6pf0iqds019v9k7"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "--numprocesses" (number->string (parallel-job-count)))))
+ (native-inputs
+ (list python-cython
+ python-pytest
+ python-pytest-xdist
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-cosmopy
+ python-emcee
+ python-george
+ python-h5py
+ python-hasasia
+ python-healpy
+ python-ipywidgets
+ python-kalepy
+ python-matplotlib
+ python-numpy
+ python-psutil
+ python-schwimmbad
+ python-scipy
+ python-sympy
+ python-tqdm))
+ (home-page "https://github.com/byu-pccl/holodeck")
+ (synopsis "MBH Binary Population Synthesis for Gravitational Wave Calculations")
+ (description
+ "This package provides a comprehensive framework for @acronym{Massive
+Black Hole,MBH} binary population synthesis. The framework includes modules
+to perform population synthesis using a variety of methodologies from
+semi-analytic models, to cosmological hydrodynamic simulations, and even
+observationally-derived galaxy merger catalogs.")
+ (license license:expat)))
+
(define-public python-pvextractor
(package
(name "python-pvextractor")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 08/46] gnu: Add python-vispy.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (6 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 07/46] gnu: Add python-holodeck Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 09/46] gnu: Add python-spisea Sharlatan Hellseher
` (37 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497
Cc: Sharlatan Hellseher, Lars-Dominik Braun, Marius Bakke,
Munyoki Kilyungi, Sharlatan Hellseher, Tanguy Le Carrour, jgart
* gnu/packages/python-graphics.scm (python-vispy): New variable.
Change-Id: Icb648d621101e0f4b60ada8c0ebbd3a05eea6fb4
---
gnu/packages/python-graphics.scm | 74 +++++++++++++++++++++++++++++++-
1 file changed, 73 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/python-graphics.scm b/gnu/packages/python-graphics.scm
index 403a3c3b34..bc0c93a8ee 100644
--- a/gnu/packages/python-graphics.scm
+++ b/gnu/packages/python-graphics.scm
@@ -16,15 +16,17 @@ (define-module (gnu packages python-graphics)
#:use-module (guix packages)
#:use-module (gnu packages)
#:use-module (gnu packages audio)
+ #:use-module (gnu packages base)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gl)
- #:use-module (gnu packages base)
#:use-module (gnu packages gtk)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages simulation)
#:use-module (gnu packages video)
#:use-module (gnu packages xorg))
@@ -235,6 +237,76 @@ (define-public python-pyglet
music." )
(license license:bsd-3)))
+(define-public python-vispy
+ (package
+ (name "python-vispy")
+ (version "0.14.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "vispy" version))
+ (sha256
+ (base32 "07fkk4bdffn0iq5cprk7ydj978rqc4lvzfcs2vkzgfh8m53vifzg"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; Test requiring network access to download test data from
+ ;; <https://raw.githubusercontent.com/vispy/demo-data/main/CONTRIBUTING.txt>.
+ #~(list "-k" (string-append "not test_read_write_image"
+ " and not test_wavefront"
+ " and not test_config"))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-library-path
+ (lambda _
+ (substitute* (list "vispy/ext/egl.py"
+ "vispy/ext/fontconfig.py"
+ "vispy/gloo/gl/es2.py"
+ "vispy/gloo/gl/gl2.py")
+ (("ctypes\\.util\\.find_library\\('EGL'\\)")
+ (format #f "'~a/~a'" #$(this-package-input "mesa")
+ "lib/libEGL.so"))
+ (("ctypes\\.util\\.find_library\\('GL'\\)")
+ (format #f "'~a/~a'" #$(this-package-input "mesa")
+ "lib/libGL.so"))
+ (("ctypes\\.util\\.find_library\\('GLESv2'\\)")
+ (format #f "'~a/~a'" #$(this-package-input "mesa")
+ "lib/libGLESv2.so"))
+ (("util\\.find_library\\('fontconfig'\\)")
+ (format #f "'~a/~a'" #$(this-package-input "fontconfig-minimal")
+ "lib/libfontconfig.so")))))
+ (add-before 'check 'prepare-test-environment
+ (lambda _
+ ;; XXX: Check how to set DPI to run headless tests, fails when
+ ;; DISPLAY is set.
+ ;; E RuntimeError: could not determine DPI
+ (setenv "HOME" "/tmp")
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (native-inputs
+ (list python-cython-3
+ python-pytest
+ python-setuptools
+ python-setuptools-scm))
+ (inputs
+ (list fontconfig
+ mesa))
+ (propagated-inputs
+ (list python-freetype-py
+ python-hsluv
+ python-kiwisolver
+ python-meshio
+ python-numpy
+ python-packaging
+ python-pillow))
+ (home-page "http://vispy.org")
+ (synopsis "Interactive scientific visualization in Python")
+ (description
+ "VisPy is a high-performance interactive 2D/3D data visualization library
+leveraging the computational power of modern Graphics Processing Units (GPUs)
+through the OpenGL library to display very large datasets.")
+ (license license:bsd-3)))
+
;;;
;;; Avoid adding new packages to the end of this file. To reduce the chances
;;; of a merge conflict, place them above in alphabetical order.
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 09/46] gnu: Add python-spisea.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (7 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 08/46] gnu: Add python-vispy Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 10/46] gnu: gpredict: Update commentary note Sharlatan Hellseher
` (36 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-spisea): New variable.
Change-Id: Iecf0f7970cb62b8512eb254d3525a34fc59521be
---
gnu/packages/astronomy.scm | 68 ++++++++++++++++++++++++++++++++++++++
1 file changed, 68 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 75f13a4bf6..74e57c3ef7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4914,6 +4914,74 @@ (define-public python-spherical-geometry
;; QD_LIBRARY_LICENSE.rst for bandeled QD source
(license license:bsd-3)))
+(define-public python-spisea
+ (package
+ (name "python-spisea")
+ (version "2.1.11")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/astropy/SPISEA")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1xgmbg1c0lijvbsfiicjl2r4y7prm47qnmj86w69wa8xxsz7n2ph"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; Tests require additinal data, see
+ ;; <https://spisea.readthedocs.io/en/latest/getting_started.html>.
+ #:tests? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'preparations
+ (lambda _
+ ;; Tests and sanity check are failed with ImportError: cannot
+ ;; import name 'update_default_config' from
+ ;; 'astropy.config.configuration'.
+ (delete-file "spisea/_astropy_init.py")
+ (with-output-to-file "spisea/__init__.py"
+ (lambda _
+ (display
+ (string-append "__version__ = \""
+ #$(package-version this-package)
+ "\""))))
+ (substitute* "setup.cfg"
+ (("astropy-package-template-example = .*") ""))
+ ;; The version could not be determined from git checkout.
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
+ (native-inputs
+ (list python-cython
+ python-extension-helpers
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-matplotlib
+ python-numpy
+ python-pysynphot
+ python-scipy))
+ (home-page "https://spisea.readthedocs.io/en/stable/index.html")
+ (synopsis "Stellar Population Synthesis Modeling")
+ (description
+ "SPISEA is an python package that generates single-age,
+single-metallicity populations (i.e. star clusters). It gives the user control
+over many parameters:
+
+@itemize
+@item cluster characteristics (age, metallicity, mass, distance)
+@item total extinction, differential extinction, and extinction law
+@item stellar evolution and atmosphere models
+@item stellar multiplicity and Initial Mass Function
+@item initial-Final Mass Relation
+@item photometric filters
+@end itemize")
+ ;; Licensed under a 3-clause BSD style license - see LICENSE.rst
+ ;; spisea/_astropy_init.py:
+ (license (list license:gpl3+ license:bsd-3))))
+
(define-public python-statmorph
(package
(name "python-statmorph")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 10/46] gnu: gpredict: Update commentary note.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (8 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 09/46] gnu: Add python-spisea Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 11/46] gnu: healpix-source: " Sharlatan Hellseher
` (35 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (gpredict): Add a link to new lease request
in upstream bug tracker.
Change-Id: I120430c5e55b1848ea03c07474fa0fa9e80aa505
---
gnu/packages/astronomy.scm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 74e57c3ef7..7c6c048520 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -805,7 +805,8 @@ (define-public gnuastro
(define-public gpredict
;; The latest tag, 2.3, has no major difference with 2.2.1 and is dated for
- ;; 2018. Additionally, there is some activity on the master branch.
+ ;; 2018. Additionally, there is some activity on the master branch, see
+ ;; <https://github.com/csete/gpredict/issues/368>.
(package
(name "gpredict")
(version "2.2.1")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 11/46] gnu: healpix-source: Update commentary note.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (9 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 10/46] gnu: gpredict: Update commentary note Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 12/46] gnu: imppg: Update to 1.9.2-beta Sharlatan Hellseher
` (34 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (healpix-source): Adjust commentary grammar
and provide example of C++ variant of the package naming.
Change-Id: I5b50b0d7ad1310a96315dc16da1eb384c5bac533
---
gnu/packages/astronomy.scm | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 7c6c048520..0f19e02dc6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -862,8 +862,10 @@ (define-public gpredict
(license license:gpl2+)))
(define* (healpix-source #:key version sha256-base32-hash)
- ;; The sources of HEALPix containing 6 independent packages (Fortran90,
- ;; IDL, C, C++, java and python) and distributed togather libsharp.
+ ;; The sources of HEALPix contains 6 independent packages (Fortran90, IDL,
+ ;; C, C++, Java and Python) and distributed together with libsharp. There
+ ;; is also a fresh C++ tarball which does not follow the naming pattern
+ ;; e.g. healpix_cxx-3.82.1.tar.gz.
(origin
(method url-fetch)
(uri
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 12/46] gnu: imppg: Update to 1.9.2-beta.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (10 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 11/46] gnu: healpix-source: " Sharlatan Hellseher
@ 2024-11-23 19:50 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 13/46] gnu: libpasastro: Update to 1.4.3 Sharlatan Hellseher
` (33 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:50 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (imppg): Update to 1.9.2-beta.
[arguments]<tests>: Enable them.
[inputs]: Add lua.
Change-Id: Idcc043bd1ec9ca76a81451cede3d2e13a902d3cb
---
gnu/packages/astronomy.scm | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0f19e02dc6..247ead0320 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -957,7 +957,7 @@ (define-public healpix-cxx
(define-public imppg
(package
(name "imppg")
- (version "0.6.5")
+ (version "1.9.2-beta")
(source
(origin
(method git-fetch)
@@ -966,15 +966,16 @@ (define-public imppg
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0a6wb1a9adwd01dmy0r03xxp8iz9y7mvh30088ajilhj4lf90vxa"))))
+ (base32 "13kqvl9ay4x0ia7iikxbhg96pp46f1awr382p05gxdvsxksq900v"))))
(build-system cmake-build-system)
- (arguments
- (list ;; No test provided
- #:tests? #f))
(native-inputs
(list boost pkg-config))
(inputs
- (list cfitsio freeimage glew wxwidgets-3.0))
+ (list cfitsio
+ freeimage
+ glew
+ lua
+ wxwidgets-3.0))
(home-page "https://github.com/GreatAttractor/imppg")
(synopsis "Astronomical Image Post-Proccessor (ImPPG)")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 13/46] gnu: libpasastro: Update to 1.4.3.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (11 preceding siblings ...)
2024-11-23 19:50 ` [bug#74497] [PATCH 12/46] gnu: imppg: Update to 1.9.2-beta Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 14/46] gnu: python-asdf-astropy: Update to 0.7.0 Sharlatan Hellseher
` (32 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (libpasastro): Update to 1.4.3.
Change-Id: Ia81332461e42dd8623378edda338f0ad4309a5d5
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 247ead0320..0cd741bea1 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1182,7 +1182,7 @@ (define-public libnova
(define-public libpasastro
(package
(name "libpasastro")
- (version "1.4.2")
+ (version "1.4.3")
(source
(origin
(method git-fetch)
@@ -1191,7 +1191,7 @@ (define-public libpasastro
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1na3gyb3nzb5gdgccs1653j2gnz6w3v1mqzhyhkx3yqw8bs3q5x0"))))
+ (base32 "16d0kc22a1cn9kl8s0mxnaw0ax6qjq3rwhfifgpf1a3f9qp17115"))))
(build-system gnu-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 14/46] gnu: python-asdf-astropy: Update to 0.7.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (12 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 13/46] gnu: libpasastro: Update to 1.4.3 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 15/46] gnu: python-astropy-iers-data: Update to 0.2024.11.18.0.35.2 Sharlatan Hellseher
` (31 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.7.0.
[source]: Adjust the name of package as it changed in PyPI.
[phases]{relax-requirements}: New phase.
Change-Id: I84fbbc2d7612d192f662e60011fa9925021d128d
---
gnu/packages/astronomy.scm | 19 +++++++++++++------
1 file changed, 13 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0cd741bea1..5b78017929 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1699,21 +1699,28 @@ (define-public python-asdf
(define-public python-asdf-astropy
(package
(name "python-asdf-astropy")
- (version "0.6.1")
+ (version "0.7.0")
(source
(origin
(method url-fetch)
- (uri (pypi-uri "asdf-astropy" version))
+ (uri (pypi-uri "asdf_astropy" version))
(sha256
- (base32 "1ipjpjiirycj2npicbp39ka7db61vx45j8dm2iis71g5l1rzkblp"))))
+ (base32 "0985bhmhnjzlf8n78r1i1dfhbvq167xqz0667kg3jm0l2177b0f9"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
#~(list "--numprocesses" (number->string (parallel-job-count)))
- #:phases #~(modify-phases %standard-phases
- (add-before 'check 'set-home-env
- (lambda _ (setenv "HOME" "/tmp"))))))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "pyproject.toml"
+ ;; numpy>=1.24, all tests passed successfuly. Scheduled for
+ ;; update in python-team.
+ ((">=1.24") ">=1.23"))))
+ (add-before 'check 'set-home-env
+ (lambda _ (setenv "HOME" "/tmp"))))))
(native-inputs
(list python-coverage
python-h5py
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 15/46] gnu: python-astropy-iers-data: Update to 0.2024.11.18.0.35.2.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (13 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 14/46] gnu: python-asdf-astropy: Update to 0.7.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 16/46] gnu: python-astropy: Update to 6.1.6 Sharlatan Hellseher
` (30 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.11.18.0.35.2.
Change-Id: Ieb60e7c657855311703b4dc4799c276e38dd5e31
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5b78017929..db4cdbb88f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3354,13 +3354,13 @@ (define-public python-astropy-healpix
(define-public python-astropy-iers-data
(package
(name "python-astropy-iers-data")
- (version "0.2024.10.14.0.32.55")
+ (version "0.2024.11.18.0.35.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy_iers_data" version))
(sha256
- (base32 "1849jbmz1x6x783w9k08a9i3g4f722lqwlnszh4dyr50dyrfbrzg"))))
+ (base32 "1n6j5pa5whcpx2hn7n78a7k2xllwgj5gq4lkb9jimrdvx7p0hl5i"))))
(build-system pyproject-build-system)
(arguments
(list #:tests? #f)) ; no tests
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 16/46] gnu: python-astropy: Update to 6.1.6.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (14 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 15/46] gnu: python-astropy-iers-data: Update to 0.2024.11.18.0.35.2 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 17/46] gnu: python-bayesicfitting: Update to 3.2.2 Sharlatan Hellseher
` (29 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 6.1.6.
[arguments]<test-flags>: Disable one failing test.
[propagated-inputs]: Add python-h5py, python-jplephem, and python-pyarrow.
[native-inputs]: Remove python-colorlog, python-coverage, python-h5py,
python-jplephem, and python-pyarrow; add python-setuptools and
python-wheel.
Change-Id: I44bdf23c84c64952e5ae846ad4b3a9c7173f2c06
---
gnu/packages/astronomy.scm | 30 +++++++++++++++++-------------
1 file changed, 17 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index db4cdbb88f..4a96837e16 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3190,13 +3190,13 @@ (define-public stackistry
(define-public python-astropy
(package
(name "python-astropy")
- (version "6.1.4")
+ (version "6.1.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy" version))
(sha256
- (base32 "0d0cnqm0p00ap8wys5jcg9h958c6mizx87wzwvmrpackn3i5h59n"))
+ (base32 "0iv8mkdflfprigv3g6666v80nvg6blwz0989hqw232g7gms57qb3"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -3215,12 +3215,16 @@ (define-public python-astropy
#:test-flags
#~(list "--pyargs" "astropy"
"--numprocesses" (number->string (parallel-job-count))
- "-k" (string-append
+ "-k" (string-join
;; Skip tests that need remote data.
- "not remote_data"
- ;; ValueError: The truth value of an array with more than
- ;; one element is ambiguous. Use a.any() or a.all()
- " and not test_table_comp[t16-t26]"))
+ (list "not remote_data"
+ ;; ValueError: The truth value of an array with more than
+ ;; one element is ambiguous. Use a.any() or a.all()
+ "test_table_comp[t16-t26]"
+ ;; UnboundLocalError: local variable 'ihd'
+ ;; referenced before assignment
+ "test_delay_doc_updates")
+ " and not "))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'preparations
@@ -3255,36 +3259,36 @@ (define-public python-astropy
(native-inputs
(list nss-certs-for-test
pkg-config
- python-colorlog
- python-coverage
python-cython-3
python-extension-helpers
- python-h5py
python-ipython
- python-jplephem
python-objgraph
python-pandas
- python-pyarrow
python-pytest
python-pytest-astropy
python-pytest-astropy-header
python-pytest-mpl
python-pytest-xdist
python-scikit-image
+ python-setuptools
python-setuptools-scm
python-sgp4
python-skyfield
python-threadpoolctl
- python-timezonefinder))
+ python-timezonefinder
+ python-wheel))
(inputs
(list expat wcslib))
(propagated-inputs
(list python-astropy-iers-data
python-configobj
+ python-h5py
+ python-jplephem
python-matplotlib
python-numpy
python-packaging
python-ply
+ python-pyarrow
python-pyerfa
python-pyyaml
python-scipy))
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 17/46] gnu: python-bayesicfitting: Update to 3.2.2.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (15 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 16/46] gnu: python-astropy: Update to 6.1.6 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 18/46] gnu: python-crds: Update to 12.0.6 Sharlatan Hellseher
` (28 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-bayesicfitting): Update to 3.2.2.
Change-Id: Id956076478a2e670f49703c9890a845cb601a167
---
gnu/packages/astronomy.scm | 8 +++-----
1 file changed, 3 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4a96837e16..a3b2392fa7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1906,18 +1906,16 @@ (define-public python-astroml
(define-public python-bayesicfitting
(package
(name "python-bayesicfitting")
- (version "3.2.1")
+ (version "3.2.2")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/dokester/BayesicFitting")
- ;; Tag style has been changed, see
- ;; <https://github.com/dokester/BayesicFitting/issues/23>.
- (commit (string-append "v." version))))
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0brqvy4r75vh93lj4jwv8wcrc96ka1v44f5ckjvr65y30plnfwg2"))))
+ (base32 "15zl6r5agfc07lnkrr4qwzx0naql0jblh96j095jyqywd2qnhfsb"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 18/46] gnu: python-crds: Update to 12.0.6.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (16 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 17/46] gnu: python-bayesicfitting: Update to 3.2.2 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 19/46] gnu: python-drizzle: Update to 2.0.0 Sharlatan Hellseher
` (27 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-crds): Update to 12.0.6.
Change-Id: Idc9306fb489d77b7aace78e5ce2563e9eda667c8
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a3b2392fa7..85ac5844a8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3708,13 +3708,13 @@ (define-public python-cmyt
(define-public python-crds
(package
(name "python-crds")
- (version "12.0.4")
+ (version "12.0.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "crds" version))
(sha256
- (base32 "1xsw120npgf962p3s9rddi88ppmvr0hs6203dnv05wvq2jyfsymv"))))
+ (base32 "1jm85myp61dckr85rfax32z4cvp4nrdz235486jp225kf765fzdx"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 19/46] gnu: python-drizzle: Update to 2.0.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (17 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 18/46] gnu: python-crds: Update to 12.0.6 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 20/46] gnu: Add python-puremagic Sharlatan Hellseher
` (26 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-drizzle): Update to 2.0.0.
Change-Id: Ic90751c48296d3aed3b49a894e6c007436f8223c
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 85ac5844a8..c10fdc14f6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3779,7 +3779,7 @@ (define-public python-drms
(define-public python-drizzle
(package
(name "python-drizzle")
- (version "1.15.3")
+ (version "2.0.0")
(source
(origin
(method git-fetch) ;PyPi doesn't have the test data sets
@@ -3788,7 +3788,7 @@ (define-public python-drizzle
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "0zxhzvd01jgl4r6ivlxkccaf2shzb0c0ir7l06096iv9n6lff3wx"))))
+ (base32 "1psa98n81wphin15j7k0392rh94dkhnwrjp32lr40gb9ldp52mcm"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 20/46] gnu: Add python-puremagic.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (18 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 19/46] gnu: python-drizzle: Update to 2.0.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 21/46] gnu: python-ginga: Update to 5.2.0 Sharlatan Hellseher
` (25 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497
Cc: Sharlatan Hellseher, Lars-Dominik Braun, Marius Bakke,
Munyoki Kilyungi, Sharlatan Hellseher, Tanguy Le Carrour, jgart
* gnu/packages/python-xyz.scm (python-puremagic): New variable.
Change-Id: I326d15cdf6eb088f456954c28fd735bc1890840a
---
gnu/packages/python-xyz.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3872b511a1..4ec6407571 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12827,6 +12827,29 @@ (define-public python-pure-eval
abstract syntax tree (AST) nodes without side effects.")
(license license:expat)))
+(define-public python-puremagic
+ (package
+ (name "python-puremagic")
+ (version "1.28")
+ (source
+ (origin
+ (method git-fetch) ;no tests in PyPI archive
+ (uri (git-reference
+ (url "https://github.com/cdgriffith/puremagic")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0sffrjjqh37ijwnggyvs2rfm4iwaz2m395wqg0x727wv8i0x3f3b"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest))
+ (home-page "https://github.com/cdgriffith/puremagic")
+ (synopsis "Pure Python implementation of magic file detection")
+ (description
+ "This package implements a functionality that will identify a file based
+off it's magic numbers.")
+ (license license:expat)))
+
(define-public python-ast-decompiler
(package
(name "python-ast-decompiler")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 21/46] gnu: python-ginga: Update to 5.2.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (19 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 20/46] gnu: Add python-puremagic Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 22/46] gnu: python-aplpy: Update to 2.2.0 Sharlatan Hellseher
` (24 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ginga): Update to 5.2.0.
[propagated-inputs]: Add python-puremagic.
Change-Id: Ibdb5e3057365ddd67efa49f0ace39912b330be71
---
gnu/packages/astronomy.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c10fdc14f6..21adcd42a0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2238,13 +2238,13 @@ (define-public python-gatspy
(define-public python-ginga
(package
(name "python-ginga")
- (version "5.1.0")
+ (version "5.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ginga" version))
(sha256
- (base32 "0c6vpcz59x889z8ggq6r5ci9cf10m7r9h262r6chx31mzdr010wf"))))
+ (base32 "0gdb4wkz3ivizyb15x86q3z9ms7mlhpakwksp417mgy1av85wssh"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2276,6 +2276,7 @@ (define-public python-ginga
python-packaging
python-photutils
python-pillow
+ python-puremagic
python-pyyaml
python-qtpy
python-scipy
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 22/46] gnu: python-aplpy: Update to 2.2.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (20 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 21/46] gnu: python-ginga: Update to 5.2.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 23/46] gnu: python-astroalign: Update to 2.6.1 Sharlatan Hellseher
` (23 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-aplpy): Update to 2.2.0.
[arguments]<tests>: Enable them.
<phases>: Add 'set-env phase.
[native-inputs]: Add python-setuptools, python-setuptools-scm, and
python-wheel.
Change-Id: I050d5e174112afe5abd707e784a152feac5cef59
---
gnu/packages/astronomy.scm | 20 ++++++++++++--------
1 file changed, 12 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 21adcd42a0..4f4d2ef504 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1584,21 +1584,28 @@ (define-public python-ads
(define-public python-aplpy
(package
(name "python-aplpy")
- (version "2.1.0")
+ (version "2.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "aplpy" version))
(sha256
- (base32 "0ph9jhv4q4i4z6nkqr6hjw9148kdlnayxsn83qgv5dqn0h3nc9r8"))))
+ (base32 "03c8k7y75f5bwm8d08fr5xfaay4d9jzr5sas4j2frs7zrr8aak51"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; FIXME: https://github.com/aplpy/aplpy/issues/492
- #:tests? #f
+ #:test-flags #~(list "--pyargs" "aplpy")
#:phases
#~(modify-phases %standard-phases
- (delete 'sanity-check))))
+ (add-after 'unpack 'set-env
+ (lambda _
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-pytest-astropy
+ python-pytest-mpl
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-astropy
python-matplotlib
@@ -1609,9 +1616,6 @@ (define-public python-aplpy
python-reproject
python-scikit-image
python-shapely))
- (native-inputs
- (list python-pytest-astropy
- python-pytest-mpl))
(home-page "http://aplpy.github.io")
(synopsis "Astronomical Plotting Library in Python")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 23/46] gnu: python-astroalign: Update to 2.6.1.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (21 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 22/46] gnu: python-aplpy: Update to 2.2.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 24/46] gnu: python-astrodendro: Update to 0.3.1 Sharlatan Hellseher
` (22 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astroalign): Update to 2.6.1.
Change-Id: I2181e07f4e90750e8855ead326bf7d0b97956089
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4f4d2ef504..7f020a1ba9 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1776,7 +1776,7 @@ (define-public python-asdf-zarr
(define-public python-astroalign
(package
(name "python-astroalign")
- (version "2.6.0")
+ (version "2.6.1")
(source
(origin
;; There are no tests in the PyPI tarball.
@@ -1786,7 +1786,7 @@ (define-public python-astroalign
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "19dmdnp2hzhzd25601xrfflhxi3j2rgpwf3nl882173wb544cxyq"))))
+ (base32 "1r65n0jx3gvr43c8svswcpvjdjwz85xcvxrrxmvxzv0w2bd6xcc9"))))
(build-system pyproject-build-system)
(native-inputs
(list python-astropy
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 24/46] gnu: python-astrodendro: Update to 0.3.1.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (22 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 23/46] gnu: python-astroalign: Update to 2.6.1 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 25/46] gnu: python-astrodendro: Fix indentation Sharlatan Hellseher
` (21 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astrodendro): Update to 0.3.1.
[source]: Swap to PyPI tarball containing a fresh release.
[phases]: Remove 'set-env-version, no longer required.
Change-Id: I3180990d8a12747b7b301680a705f956a7f47e0c
---
gnu/packages/astronomy.scm | 26 +++++---------------------
1 file changed, 5 insertions(+), 21 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 7f020a1ba9..78e9d0c156 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1808,32 +1808,16 @@ (define-public python-astroalign
(license license:expat)))
(define-public python-astrodendro
- ;; XXX: 0.2.0 was released 8 years ago and not compatible with Python 3.10,
- ;; use the latest commit on master branch, see
- ;; <https://github.com/dendrograms/astrodendro/issues/189>.
- (let ((commit "3181c36489caa4c62b36b7ec8e06f4da65af6fda")
- (revision "0"))
(package
(name "python-astrodendro")
- (version (git-version "0.2.0" revision commit))
+ (version "0.3.1")
(source
(origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/dendrograms/astrodendro")
- (commit commit)))
+ (method url-fetch)
+ (uri (pypi-uri "astrodendro" version))
(sha256
- (base32 "1imahzl0g8r1lxyiz9wi9q4zk519yxgn6qs1nb0ybb34sipjs4kz"))
- (file-name (git-file-name name version))))
+ (base32 "0pav2rq5q0wyr38g6z8ai4z2iqqc9x04iwll158yvkvgnv352m0i"))))
(build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (add-before 'build 'set-env-version
- (lambda _
- (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
- #$(version-major+minor+point version)))))))
(native-inputs
(list python-pytest
python-setuptools
@@ -1849,7 +1833,7 @@ (define-public python-astrodendro
(description
"This package provides an way to compute dendrograms of observed or
simulated Astronomical data in Python.")
- (license license:expat))))
+ (license license:expat)))
(define-public python-astroml
(package
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 25/46] gnu: python-astrodendro: Fix indentation.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (23 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 24/46] gnu: python-astrodendro: Update to 0.3.1 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 26/46] gnu: python-cdflib: Update to 1.3.2 Sharlatan Hellseher
` (20 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astrodendro): Fix indentation.
Change-Id: I3bfe4cd012c55d6affaaab8c0ee8cee3d4f9847c
---
gnu/packages/astronomy.scm | 50 +++++++++++++++++++-------------------
1 file changed, 25 insertions(+), 25 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 78e9d0c156..1a45356bf8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1808,32 +1808,32 @@ (define-public python-astroalign
(license license:expat)))
(define-public python-astrodendro
- (package
- (name "python-astrodendro")
- (version "0.3.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "astrodendro" version))
- (sha256
- (base32 "0pav2rq5q0wyr38g6z8ai4z2iqqc9x04iwll158yvkvgnv352m0i"))))
- (build-system pyproject-build-system)
- (native-inputs
- (list python-pytest
- python-setuptools
- python-setuptools-scm
- python-wheel))
- (propagated-inputs
- (list python-astropy
- python-h5py
- python-matplotlib
- python-numpy))
- (home-page "https://dendrograms.readthedocs.io/")
- (synopsis "Astronomical dendrograms computation")
- (description
- "This package provides an way to compute dendrograms of observed or
+ (package
+ (name "python-astrodendro")
+ (version "0.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "astrodendro" version))
+ (sha256
+ (base32 "0pav2rq5q0wyr38g6z8ai4z2iqqc9x04iwll158yvkvgnv352m0i"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-h5py
+ python-matplotlib
+ python-numpy))
+ (home-page "https://dendrograms.readthedocs.io/")
+ (synopsis "Astronomical dendrograms computation")
+ (description
+ "This package provides an way to compute dendrograms of observed or
simulated Astronomical data in Python.")
- (license license:expat)))
+ (license license:expat)))
(define-public python-astroml
(package
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 26/46] gnu: python-cdflib: Update to 1.3.2.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (24 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 25/46] gnu: python-astrodendro: Fix indentation Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 27/46] gnu: python-jwst: Update to 1.16.1 Sharlatan Hellseher
` (19 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.3.2.
Change-Id: Ibd8ed32e12c09b3f9e88a668e92a9c1c9dc9db86
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1a45356bf8..692c54e66e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3583,7 +3583,7 @@ (define-public python-ccdproc
(define-public python-cdflib
(package
(name "python-cdflib")
- (version "1.3.1")
+ (version "1.3.2")
(source
(origin
(method git-fetch) ; no tests in PyPI release
@@ -3592,7 +3592,7 @@ (define-public python-cdflib
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "0zmz9wjhlq43lqy5k4fld9cj5k39s1hkkaligrn3kpf9hcbd79qn"))))
+ (base32 "0g723s5xg7vd37vlbjpgpiljd3vxwccslwzcf619zvdnc2xbcw2c"))))
(build-system pyproject-build-system)
(arguments
(list #:phases
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 27/46] gnu: python-jwst: Update to 1.16.1.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (25 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 26/46] gnu: python-cdflib: Update to 1.3.2 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 28/46] gnu: python-ndcube: Update to 2.2.4 Sharlatan Hellseher
` (18 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-jwst): Update to 1.16.1.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: Id5c45dccc8f1b06826a3bae09e2b8bc68d6f5a20
---
gnu/packages/astronomy.scm | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 692c54e66e..546b0c6e0c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5365,13 +5365,13 @@ (define-public python-jplephem
(define-public python-jwst
(package
(name "python-jwst")
- (version "1.16.0")
+ (version "1.16.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "jwst" version))
(sha256
(base32
- "06krkpfhwpc825bsdl0rffd9qlqw1rl928fwxa7cywds5dahpiyn"))
+ "1bqfgqp4gdm1ky5dvzhzpgygwr710h4mbykp5sb9aw3cw9jg1bk7"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -5431,7 +5431,9 @@ (define-public python-jwst
python-pytest-openfiles
python-requests-mock
;; python-ruff ; not packed yet in Guix
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(home-page "https://jwst-pipeline.readthedocs.io/en/latest/")
(synopsis
"Python library for science observations from the James Webb Space Telescope")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 28/46] gnu: python-ndcube: Update to 2.2.4.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (26 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 27/46] gnu: python-jwst: Update to 1.16.1 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 29/46] gnu: python-photutils: Update to 2.0.2 Sharlatan Hellseher
` (17 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ndcube): Update to 2.2.4.
Change-Id: I326497497ca71d156ead1c45a14d24556fe6bd9b
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 546b0c6e0c..33e20c16f8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4019,13 +4019,13 @@ (define-public python-naima
(define-public python-ndcube
(package
(name "python-ndcube")
- (version "2.2.3")
+ (version "2.2.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ndcube" version))
(sha256
- (base32 "01sxmy5ki5bcgva5z3m20mg20dfx5n6dkb41kdfcdizqmsw96qmn"))))
+ (base32 "08l4nq43igpic6v3zjnyjq3yy44czg79798rmv5la52hbzbz1kj3"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 29/46] gnu: python-photutils: Update to 2.0.2.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (27 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 28/46] gnu: python-ndcube: Update to 2.2.4 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 30/46] gnu: python-pyerfa: Update to 2.0.1.5 Sharlatan Hellseher
` (16 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-photutils): Update to 2.0.2.
Change-Id: I28b9d14f13157362c4781068c16c22b890c34a24
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 33e20c16f8..a6d0700702 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4084,13 +4084,13 @@ (define-public python-ndcube
(define-public python-photutils
(package
(name "python-photutils")
- (version "2.0.1")
+ (version "2.0.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "photutils" version))
(sha256
- (base32 "1mcsp5bsg3i6w3v9gf7vhkyhlxsn57hgbs0b94p5c4hcv9fa4y3g"))))
+ (base32 "0lpah7a4wb3r7i8d4gc5bmb34bx3idg921220xhsgdplml77syzh"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 30/46] gnu: python-pyerfa: Update to 2.0.1.5.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (28 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 29/46] gnu: python-photutils: Update to 2.0.2 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 31/46] gnu: python-pyvo: Update to 1.6 Sharlatan Hellseher
` (15 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.1.5.
Change-Id: I9be430d4acacbbfccb4eaa928863864291ab2649
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a6d0700702..248ca2af88 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5488,13 +5488,13 @@ (define-public python-jwst-reffiles
(define-public python-pyerfa
(package
(name "python-pyerfa")
- (version "2.0.1.4")
+ (version "2.0.1.5")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyerfa" version))
(sha256
- (base32 "1lwx4hril705r2iz4pirgn0wrpv1wk20mr669g03bsij69qsdf5c"))
+ (base32 "1h7nw61wqx9qsznnl8qandixr6c1n3f65hyqwzanav44wi7v5mhp"))
(modules '((guix build utils)))
(snippet
#~(begin
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 31/46] gnu: python-pyvo: Update to 1.6.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (29 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 30/46] gnu: python-pyerfa: Update to 2.0.1.5 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 32/46] gnu: python-rad: Update to 0.22.0 Sharlatan Hellseher
` (14 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.6.
Change-Id: Iff2f08d372f950193c53f394d73be07b1f0a1de4
---
gnu/packages/astronomy.scm | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 248ca2af88..50d7b57ad5 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4323,14 +4323,17 @@ (define-public python-pyavm
(define-public python-pyvo
(package
(name "python-pyvo")
- (version "1.5.3")
+ (version "1.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyvo" version))
(sha256
- (base32 "0zlqn7qflv5ipmlqkq85qjgggz84zi67jm45w4ayfapmhh74sa7x"))))
+ (base32 "1ahcazgxhmxscjgz58mxw75k9g0xm7iffnc4lqfbm3h0wqiz8vnv"))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags #~(list "--pyargs" "pyvo")))
(native-inputs
(list python-pytest-astropy
python-requests-mock
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 32/46] gnu: python-rad: Update to 0.22.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (30 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 31/46] gnu: python-pyvo: Update to 1.6 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 33/46] gnu: python-regularizepsf: Update to 1.0.2 Sharlatan Hellseher
` (13 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-rad): Update to 0.22.0.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: If9509ccba985f08a3a6d263316beb263ff055db4
---
gnu/packages/astronomy.scm | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 50d7b57ad5..23c8a85386 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6259,13 +6259,13 @@ (define-public python-gwcs
(define-public python-rad
(package
(name "python-rad")
- (version "0.21.0")
+ (version "0.22.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rad" version))
(sha256
- (base32 "0b2gfsyccfx9dmmh725h7qjh5rxabg5w1j52yzfi8b0a8nmg6j6a"))))
+ (base32 "1p6v49gzbzishy1kdd5g8nbl97qp459s1smb6j94wvif4262zkm8"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -6273,9 +6273,13 @@ (define-public python-rad
;; python-rad -> python-roman-datamodels -> python-crds -> python-rad
#:test-flags #~(list "--ignore=tests/test_schemas.py")))
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
- (list python-asdf python-asdf-astropy))
+ (list python-asdf
+ python-asdf-astropy))
(home-page "https://github.com/spacetelescope/rad")
(synopsis "Roman Attribute Dictionary")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 33/46] gnu: python-regularizepsf: Update to 1.0.2.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (31 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 32/46] gnu: python-rad: Update to 0.22.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 34/46] gnu: python-reproject: Update to 0.14.1 Sharlatan Hellseher
` (12 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-regularizepsf): Update to 1.0.2.
[source]: Swap to PyPI tarball as a fresh release contains tests now.
[phases]: Remove all custom ones.
[propagated-inputs]: Remove python-dill and python-lmfit.
[native-inputs]: Remove python-cython and python-pytest-runner; add
python-setuptools, python-setuptools-scm, and python-wheel.
Change-Id: I1c17bef1a1a21665b633d22282a9df37155e4f29
---
gnu/packages/astronomy.scm | 36 ++++++++++--------------------------
1 file changed, 10 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 23c8a85386..0391c339cb 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4408,44 +4408,28 @@ (define-public python-regions
(define-public python-regularizepsf
(package
(name "python-regularizepsf")
- (version "0.4.0")
+ (version "1.0.2")
(source
(origin
- (method git-fetch) ; no tests data in the PyPI tarball
- (uri (git-reference
- (url "https://github.com/punch-mission/regularizepsf")
- (commit version)))
- (file-name (git-file-name name version))
+ (method url-fetch)
+ (uri (pypi-uri "regularizepsf" version))
(sha256
- (base32 "0b16lscrzd1lribwis19y6dh6qrgddhcinlc2lbwkzzqqkjdnyzi"))))
+ (base32 "1ial8i9nshhpn3lsgnjqm94dfrzxwz2qgpd8bjzmml1ls0j7sm9v"))))
(build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "setup.py"
- ;; numpy==1.26.4
- (("==1.26.4") ">=1.23"))))
- (add-before 'check 'build-extensions
- (lambda _
- (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-mpl
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-astropy
- python-dill
python-h5py
- python-lmfit
python-matplotlib
python-numpy
python-scikit-image
python-scipy
python-sep-pjw))
- (native-inputs
- (list python-cython
- python-pytest
- python-pytest-mpl
- python-pytest-runner))
(home-page "https://github.com/punch-mission/regularizepsf")
(synopsis "Point spread function modeling and regularization")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 34/46] gnu: python-reproject: Update to 0.14.1.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (32 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 33/46] gnu: python-regularizepsf: Update to 1.0.2 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 35/46] gnu: python-roman-datamodels: Update to 0.22.0 Sharlatan Hellseher
` (11 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-reproject): Update to 0.14.1.
Change-Id: I4d354d42193933cb50440383a544d25f9418749b
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0391c339cb..d793a63889 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4440,13 +4440,13 @@ (define-public python-regularizepsf
(define-public python-reproject
(package
(name "python-reproject")
- (version "0.14.0")
+ (version "0.14.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "reproject" version))
(sha256
- (base32 "1h5v74da32ai9dkhcdn3xx4h05awlxhhnrsdjj1sb644c1vlyg6x"))))
+ (base32 "0yg5dga054xdwsx75q204h04gmrw0mgayc74l4rpymcbkckymj2k"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 35/46] gnu: python-roman-datamodels: Update to 0.22.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (33 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 34/46] gnu: python-reproject: Update to 0.14.1 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 36/46] gnu: python-sep-pjw: Update to 1.3.7 Sharlatan Hellseher
` (10 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.22.0.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: I7cfc5aed379c9056f93e1214ec5b06f56edced74
---
gnu/packages/astronomy.scm | 18 ++++++++++--------
1 file changed, 10 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d793a63889..ac3b00f685 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6359,13 +6359,13 @@ (define-public python-radiospectra
(define-public python-roman-datamodels
(package
(name "python-roman-datamodels")
- (version "0.21.0")
+ (version "0.22.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "roman_datamodels" version))
(sha256
- (base32 "00hwyxixdk3i48nhqnn7pnkkp3fran6fn8kzwx2w4bjkwv8cd126"))))
+ (base32 "0n50pgs7y0nmrx86qlny27mas2zgx708gm3xfkl7an2nwkdfwfld"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -6376,6 +6376,14 @@ (define-public python-roman-datamodels
(add-after 'unpack 'set-env
(lambda _
(setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-doctestplus
+ python-pytest-env
+ python-pytest-xdist
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-asdf
python-asdf-astropy
@@ -6384,12 +6392,6 @@ (define-public python-roman-datamodels
python-numpy
python-psutil
python-rad))
- (native-inputs
- (list python-pytest
- python-pytest-doctestplus
- python-pytest-env
- python-pytest-xdist
- python-setuptools-scm))
(home-page "https://github.com/spacetelescope/roman_datamodels")
(synopsis "Roman Datamodels Support")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 36/46] gnu: python-sep-pjw: Update to 1.3.7.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (34 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 35/46] gnu: python-roman-datamodels: Update to 0.22.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 37/46] gnu: python-sncosmo: Update to 2.11.2 Sharlatan Hellseher
` (9 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sep-pjw): Update to 1.3.7.
Change-Id: I2adbb4b283ce2b545ce8dcd0671beb88a8fcd3b5
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ac3b00f685..43832d92d6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5836,13 +5836,13 @@ (define-public python-sep
(define-public python-sep-pjw
(package
(name "python-sep-pjw")
- (version "1.3.6")
+ (version "1.3.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sep_pjw" version))
(sha256
- (base32 "0ji3khgswidnnqx34js9fyk39kgh4gvf7q8gk2f7r4acaabzja2v"))))
+ (base32 "1z8m2l3ccxj1izdazv7a0hg6zd1495bvby8w114s5ji7fd91vdv7"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 37/46] gnu: python-sncosmo: Update to 2.11.2.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (35 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 36/46] gnu: python-sep-pjw: Update to 1.3.7 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 38/46] gnu: python-specutils: Update to 1.19.0 Sharlatan Hellseher
` (8 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sncosmo): Update to 2.11.2.
Change-Id: I00ec74de18a88782895e185edb063e9508b90d46
---
gnu/packages/astronomy.scm | 66 ++++++++++++++++++++------------------
1 file changed, 34 insertions(+), 32 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 43832d92d6..93085adac7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2794,49 +2794,51 @@ (define-public python-sirilic
(define-public python-sncosmo
(package
(name "python-sncosmo")
- (version "2.11.1")
+ (version "2.11.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sncosmo" version))
(sha256
- (base32 "0nmhrvaw22zxpmykl70a91mc88pxmw0x5fdxjiz3hdzkdbqrg0x9"))))
+ (base32 "1n7kh2qinp04ilf8d26hgjs6c3bdy5vbmppc6ps9jy1q0ll8gi69"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
;; Disable tests requireing remote access to download test data.
#~(list
- "-k" (string-append "not test_megacampsf_bandpass"
- " and not test_builtins_remote_aa"
- " and not test_builtins_remote_nm"
- " and not test_builtins_remote_um"
- " and not test_builtins_remote_wfc3"
- " and not test_builtins_megacampsf"
- " and not test_builtins_timeseries_ascii"
- " and not test_builtins_timeseries_fits"
- " and not test_builtins_salt2model"
- " and not test_builtins_salt3model"
- " and not test_builtins_2011fe"
- " and not test_builtins_mlcs2k2"
- " and not test_builtins_snemo"
- " and not test_builtins_sugar"
- " and not test_builtins_magsys_fits"
- " and not test_builtins_magsys_csp"
- " and not test_builtins_magsys_ab_b12"
- " and not test_builtins_magsys_jla"
- " and not test_csp_magsystem"
- " and not test_compositemagsystem_band_error"
- " and not test_G10"
- " and not test_C11"
- " and not test_salt2source_timeseries_vs_snfit"
- " and not test_salt2source_rcov_vs_snfit"
- " and not test_bandflux"
- " and not test_bandflux_multi"
- " and not test_bandflux_zpsys"
- " and not test_bandfluxcov"
- " and not test_bandmag"
- " and not test_sugarsource"))
+ "-k" (string-join
+ (list "not test_megacampsf_bandpass"
+ "test_builtins_remote_aa"
+ "test_builtins_remote_nm"
+ "test_builtins_remote_um"
+ "test_builtins_remote_wfc3"
+ "test_builtins_megacampsf"
+ "test_builtins_timeseries_ascii"
+ "test_builtins_timeseries_fits"
+ "test_builtins_salt2model"
+ "test_builtins_salt3model"
+ "test_builtins_2011fe"
+ "test_builtins_mlcs2k2"
+ "test_builtins_snemo"
+ "test_builtins_sugar"
+ "test_builtins_magsys_fits"
+ "test_builtins_magsys_csp"
+ "test_builtins_magsys_ab_b12"
+ "test_builtins_magsys_jla"
+ "test_csp_magsystem"
+ "test_compositemagsystem_band_error"
+ "test_G10"
+ "test_C11"
+ "test_salt2source_timeseries_vs_snfit"
+ "test_salt2source_rcov_vs_snfit"
+ "test_bandflux"
+ "test_bandflux_multi"
+ "test_bandflux_zpsys"
+ "test_bandfluxcov"
+ "test_bandmag"
+ "test_sugarsource")
+ " and not "))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 38/46] gnu: python-specutils: Update to 1.19.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (36 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 37/46] gnu: python-sncosmo: Update to 2.11.2 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 39/46] gnu: python-statmorph: Update to 0.6.0 Sharlatan Hellseher
` (7 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-specutils): Update to 1.19.0.
Change-Id: Ic90ecae2032682f893f7bfd7c4521d02d906fec1
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 93085adac7..76910307c5 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4800,13 +4800,13 @@ (define-public python-spectral-cube
(define-public python-specutils
(package
(name "python-specutils")
- (version "1.18.0")
+ (version "1.19.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "specutils" version))
(sha256
- (base32 "16fwazgk1cbqd9njrmwg4xyxg4qykv8c5mk5bzxwz1q5arjc8cy7"))))
+ (base32 "1iwkrs436z8xrzwl5rkla8nimyfrx5ydklghm41xgzr27nkvqa12"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 39/46] gnu: python-statmorph: Update to 0.6.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (37 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 38/46] gnu: python-specutils: Update to 1.19.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 40/46] gnu: python-stcal: Update to 1.10.0 Sharlatan Hellseher
` (6 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-statmorph): Update to 0.6.0.
[arguments]<test-flags>: Enable all tests as issue is resolved upstream.
[propagated-inputs]: Remove python-matplotlib.
Change-Id: I48b71e590b9c4da4f09ab578767c05890110e8d4
---
gnu/packages/astronomy.scm | 28 ++--------------------------
1 file changed, 2 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 76910307c5..a83cee194b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4976,43 +4976,19 @@ (define-public python-spisea
(define-public python-statmorph
(package
(name "python-statmorph")
- (version "0.5.7")
+ (version "0.6.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "statmorph" version))
(sha256
- (base32 "06rbwrqlvdzn9innx05kjjmm4mmacd8kwwsfdf5idbwzby5ny5lw"))))
+ (base32 "1575vmk4kl06yxyid7mb1r7llbrmraagvx2b0h5x335ha7irnkjk"))))
(build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- ;; XXX: Skip most of the tests for now, see
- ;; <https://github.com/vrodgom/statmorph/issues/11>.
- #~(list "-k" (string-append "not test_asymmetric"
- " and not test_bright_pixel"
- " and not test_catastrophic"
- " and not test_empty_gini_segmap"
- " and not test_full_gini_segmap"
- " and not test_full_segmap"
- " and not test_insufficient_data"
- " and not test_make_figure"
- " and not test_masked_centroid"
- " and not test_merger"
- " and not test_missing_arguments"
- " and not test_negative_source"
- " and not test_no_psf"
- " and not test_psf"
- " and not test_random_noise"
- " and not test_small_source"
- " and not test_tiny_source"
- " and not test_weightmap"))))
(native-inputs
(list python-pytest
python-setuptools))
(propagated-inputs
(list python-astropy
- python-matplotlib
python-numpy
python-photutils
python-scikit-image
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 40/46] gnu: python-stcal: Update to 1.10.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (38 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 39/46] gnu: python-statmorph: Update to 0.6.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 41/46] gnu: python-stdatamodels: Update to 2.1.2 Sharlatan Hellseher
` (5 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stcal): Update to 1.10.0.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: If0da286182d27e74af1278a7dfc1e3d54f6b8d23
---
gnu/packages/astronomy.scm | 35 +++++++++++++++++++----------------
1 file changed, 19 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a83cee194b..07ed2ea727 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5110,26 +5110,27 @@ (define-public python-stsci-stimage
(define-public python-stcal
(package
(name "python-stcal")
- (version "1.9.0")
+ (version "1.10.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "stcal" version))
(sha256
- (base32 "1n843r19zyjm14iadfbi71ixpk0jrbhaj7h3szy1yhnhrfsrkwar"))))
+ (base32 "1h0vkc3nd77qm2ph1nihpd1n7dzr3d4rw2wga6j7siqjiwmphj3g"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
- #~(list "-k" (string-append
+ #~(list "-k" (string-join
;; Tests requiring network access.
- "not test_absolute_align"
- " and not test_relative_align[True]"
- " and not test_relative_align[False]"
- " and not test_get_catalog"
- " and not test_create_catalog"
- " and not test_create_catalog_graceful_failure"
- " and not test_parse_refcat"))
+ (list "not test_absolute_align"
+ "test_relative_align[True]"
+ "test_relative_align[False]"
+ "test_get_catalog"
+ "test_create_catalog"
+ "test_create_catalog_graceful_failure"
+ "test_parse_refcat")
+ " and not "))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-slope-fitter
@@ -5149,6 +5150,14 @@ (define-public python-stcal
(lambda _
;; Cython extensions have to be built before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (native-inputs
+ (list python-cython-3
+ python-psutil
+ python-pytest
+ python-pytest-doctestplus
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list opencv ;Provides OpenCV-Python
python-asdf
@@ -5160,12 +5169,6 @@ (define-public python-stcal
python-scikit-image
python-scipy
python-tweakwcs))
- (native-inputs
- (list python-cython-3
- python-psutil
- python-pytest
- python-pytest-doctestplus
- python-setuptools-scm))
(home-page "https://github.com/spacetelescope/stcal")
(synopsis "STScI tools and algorithms used in calibration pipelines")
(description "STScI tools and algorithms used in calibration pipelines.")
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 41/46] gnu: python-stdatamodels: Update to 2.1.2.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (39 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 40/46] gnu: python-stcal: Update to 1.10.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 42/46] gnu: python-stsynphot: Update to 1.4.0 Sharlatan Hellseher
` (4 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 2.1.2.
Change-Id: I59dec6df596c42b48cf6841c4d10857af9c92bd2
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 07ed2ea727..82275ebbda 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5177,13 +5177,13 @@ (define-public python-stcal
(define-public python-stdatamodels
(package
(name "python-stdatamodels")
- (version "2.1.1")
+ (version "2.1.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "stdatamodels" version))
(sha256
- (base32 "08zkr0amc65dj2lr90d2r29cj23f8h0ms94qmmcgcq2r4xlpna10"))))
+ (base32 "0x7fzkda9cr7bsf8hq2q090a73cxk3l3ynipq8lqixfp8c94m3kq"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 42/46] gnu: python-stsynphot: Update to 1.4.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (40 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 41/46] gnu: python-stdatamodels: Update to 2.1.2 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 43/46] gnu: python-synphot: Update to 1.5.0 Sharlatan Hellseher
` (3 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsynphot): Update to 1.4.0.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: I9155f517358ecf651a47fe48a676202a2c19bb2f
---
gnu/packages/astronomy.scm | 38 +++++++++++++++++++++-----------------
1 file changed, 21 insertions(+), 17 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 82275ebbda..1295b04f6b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5263,13 +5263,13 @@ (define-public python-stpipe
(define-public python-stsynphot
(package
(name "python-stsynphot")
- (version "1.3.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "stsynphot" version))
- (sha256
- (base32
- "15m3vy39mc7rh1mrxs8d2bs0bx5vv632m6wg8n15fqjzhadqy7j5"))))
+ (version "1.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "stsynphot" version))
+ (sha256
+ (base32 "02xaglg1kv3mk6gqjcs1283mmy9b42fgsga8g2z8768lkgwmmg9j"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -5278,16 +5278,20 @@ (define-public python-stsynphot
;; Failed to load Vega spectrum from
;; /grp/redcat/trds/calspec/alpha_lyr_stis_010.fits;
#:tests? #f))
- (propagated-inputs (list python-astropy
- python-beautifulsoup4
- python-matplotlib
- python-numpy
- python-scipy
- python-synphot))
- (native-inputs (list python-pytest
- python-pytest-astropy
- python-pytest-astropy-header
- python-setuptools-scm))
+ (native-inputs
+ (list python-pytest
+ python-pytest-astropy
+ python-pytest-astropy-header
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-beautifulsoup4
+ python-matplotlib
+ python-numpy
+ python-scipy
+ python-synphot))
(home-page "https://github.com/spacetelescope/stsynphot_refactor")
(synopsis "Synthetic photometry using Astropy for HST and JWST")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 43/46] gnu: python-synphot: Update to 1.5.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (41 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 42/46] gnu: python-stsynphot: Update to 1.4.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 44/46] gnu: python-yt: Update to 4.4.0 Sharlatan Hellseher
` (2 subsequent siblings)
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-synphot): Update to 1.5.0.
Simplify package.
[arguments]<phases>: Use default 'check phase.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: Iccc0c2bedc7075af3da2bc0ffb822787d40d6f41
---
gnu/packages/astronomy.scm | 25 +++++++++----------------
1 file changed, 9 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1295b04f6b..aec9cc330a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5881,36 +5881,29 @@ (define-public python-suntime
(define-public python-synphot
(package
(name "python-synphot")
- (version "1.4.0")
+ (version "1.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "synphot" version))
(sha256
- (base32 "0fk860bxaqbamrq15pkqlbvhbf70y50cra2mgvv9r0cxq37isbi6"))))
+ (base32 "0xifg0fbh2rj3jn5i504c0qh51dlzgr1l2k962nh38synjhq9csc"))))
(build-system pyproject-build-system)
(arguments
(list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? test-flags #:allow-other-keys)
- (when tests?
- (invoke "python" "setup.py" "build_ext" "--inplace")
- ;; Step out of the source directory to avoid interference; we
- ;; want to run the installed code with extensions etc.
- (with-directory-excursion "/tmp"
- (apply invoke "pytest" "-v" test-flags))))))))
+ #:test-flags #~(list "--pyargs" "synphot")))
+ (native-inputs
+ (list python-pytest
+ python-pytest-astropy
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-astropy
python-dust-extinction
python-numpy
python-scipy
python-specutils ))
- (native-inputs
- (list python-pytest
- python-pytest-astropy
- python-setuptools-scm))
(home-page "https://github.com/spacetelescope/synphot_refactor")
(synopsis "Synthetic photometry using Astropy")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 44/46] gnu: python-yt: Update to 4.4.0.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (42 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 43/46] gnu: python-synphot: Update to 1.5.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 45/46] gnu: python-yt-astro-analysis: Adjust inputs Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 46/46] gnu: python-gatspy: " Sharlatan Hellseher
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-yt): Update to 4.4.0.
[arguments]<test-flags>: Disable some failing tests and tests requiring
network access.
[propagated-inputs]: Add python-astropy, python-cartopy,
python-glue-core, python-h5py, python-netcdf4, python-pandas,
python-pooch, python-regions, python-requests, and python-xarray.
[native-inputs]: Remove python-nose, python-nose-exclude, and
python-nose-timer; add nss-certs-for-test.
Change-Id: Ia868892b81fb8c5fc72ae20040b5f70ef936ff78
---
gnu/packages/astronomy.scm | 42 ++++++++++++++++++++++++++++++--------
1 file changed, 34 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index aec9cc330a..858fb75d45 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6584,19 +6584,30 @@ (define-public python-wiimatch
(define-public python-yt
(package
(name "python-yt")
- (version "4.3.1")
+ (version "4.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "yt" version))
(sha256
- (base32 "03jy35vyniyd1pd3sv0zpd2f3ks2iyqw65xv28ids8nw6v1vavbv"))))
+ (base32 "1mf084wp0wrhi17npzbyz42lh3xwlc2hggr8h4pmighsnafdy58f"))))
(build-system pyproject-build-system)
(arguments
(list
#:build-backend "setuptools.build_meta"
#:test-flags
- #~(list "--numprocesses" (number->string (parallel-job-count)))
+ #~(list "--numprocesses" (number->string (parallel-job-count))
+ "-k" (string-join
+ ;; Tests requiring networking.
+ (list "not test_load_sample_timeout"
+ "test_unknown_filename"
+ "test_typo_filename"
+ "test_data_dir_broken"
+ "test_registry_byte_size_dtype"
+ "test_registry_byte_size_sign"
+ ;; AssertionError: Arrays are not equal
+ "test_field_cut_off_axis_octree")
+ " and not "))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
@@ -6612,10 +6623,8 @@ (define-public python-yt
(setenv "HOME" "/tmp")
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
- (list python-cython-3
- python-nose
- python-nose-exclude
- python-nose-timer
+ (list nss-certs-for-test
+ python-cython-3
python-pyaml
python-pytest
python-pytest-mpl
@@ -6634,7 +6643,24 @@ (define-public python-yt
python-pillow
python-tomli-w
python-tqdm
- python-unyt))
+ python-unyt
+ ;; Optional
+ ;; python-arm-pyart ; not packed yet
+ ;; python-f90nml
+ ;; python-firefly
+ ;; python-miniball
+ ;; python-pyx
+ ;; python-ratarmount
+ python-astropy
+ python-cartopy
+ python-glue-core
+ python-h5py
+ python-netcdf4
+ python-pandas
+ python-pooch
+ python-regions
+ python-requests
+ python-xarray))
(home-page "http://yt-project.org/")
(synopsis "Analyzing and visualizing volumetric data framework")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 45/46] gnu: python-yt-astro-analysis: Adjust inputs.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (43 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 44/46] gnu: python-yt: Update to 4.4.0 Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 46/46] gnu: python-gatspy: " Sharlatan Hellseher
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-yt-astro-analysis) [native-inputs]:
Remove python-nose; add python-pytest.
Change-Id: I0b08ced355e739f1522cc749ea96db65413dc7b5
---
gnu/packages/astronomy.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 858fb75d45..999914b3f9 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6700,8 +6700,9 @@ (define-public python-yt-astro-analysis
(build-system pyproject-build-system)
(arguments
(list
- ;; Disable test which require MPI setup and failed to run, check why.
- #:test-flags #~(list "--ignore=test_halo_finders_ts.py")
+ ;; Disable test which requires MPI setup and failed to run, check why.
+ #:test-flags
+ #~(list "--ignore=yt_astro_analysis/halo_analysis/tests/test_halo_finders_ts.py")
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'build-extensions
@@ -6709,9 +6710,9 @@ (define-public python-yt-astro-analysis
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-cython
- python-nose
- python-tomli
+ python-pytest
python-setuptools
+ python-tomli
python-wheel))
(propagated-inputs
(list python-h5py
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread* [bug#74497] [PATCH 46/46] gnu: python-gatspy: Adjust inputs.
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
` (44 preceding siblings ...)
2024-11-23 19:51 ` [bug#74497] [PATCH 45/46] gnu: python-yt-astro-analysis: Adjust inputs Sharlatan Hellseher
@ 2024-11-23 19:51 ` Sharlatan Hellseher
45 siblings, 0 replies; 47+ messages in thread
From: Sharlatan Hellseher @ 2024-11-23 19:51 UTC (permalink / raw)
To: 74497; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-gatspy) [native-inputs]: Remove
python-nose.
Change-Id: Ifbbaedf62817339743ac2313626cd058134479d9
---
gnu/packages/astronomy.scm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 999914b3f9..4370f8e1c3 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2210,12 +2210,14 @@ (define-public python-gatspy
;; Tests need this
(add-before 'check 'set-HOME
(lambda _ (setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-pytest
+ python-setuptools-scm))
(propagated-inputs
(list python-astroml
python-numpy
python-scipy
python-supersmoother))
- (native-inputs (list python-pytest python-nose python-setuptools-scm))
(home-page "https://github.com/astroml/gatspy")
(synopsis "General tools for astronomical time series in Python")
(description
--
2.46.0
^ permalink raw reply related [flat|nested] 47+ messages in thread