From mboxrd@z Thu Jan 1 00:00:00 1970 From: Roel Janssen Subject: [PATCH] gnu: Add r-mutationalpatterns. Date: Thu, 27 Oct 2016 17:07:40 +0200 Message-ID: <87zilpde4j.fsf@gnu.org> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:40697) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bzmGC-0001IE-1j for guix-devel@gnu.org; Thu, 27 Oct 2016 11:06:32 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bzmG7-0004Ny-FR for guix-devel@gnu.org; Thu, 27 Oct 2016 11:06:28 -0400 Received: from fencepost.gnu.org ([2001:4830:134:3::e]:57346) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bzmG7-0004Nh-Bm for guix-devel@gnu.org; Thu, 27 Oct 2016 11:06:23 -0400 Received: from [143.121.198.169] (port=50400 helo=roel-tp) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1bzmG6-0006qI-UU for guix-devel@gnu.org; Thu, 27 Oct 2016 11:06:23 -0400 List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org Dear Guix, The following patch adds another bioinformatics-related R package. Kind regards, Roel Janssen >From 92a36d068c90c96b2b5b4a7c8b4578ac3f6255cd Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Thu, 27 Oct 2016 17:06:07 +0200 Subject: [PATCH] gnu: Add r-mutationalpatterns. * gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable. --- gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fa35531..09bfb9d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7394,6 +7394,40 @@ library implementing most of the pipeline's features.") @dfn{RNA-centric annotation system} (RCAS).") (license license:agpl3+))) +(define-public r-mutationalpatterns + (package + (name "r-mutationalpatterns") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MutationalPatterns" version)) + (sha256 + (base32 + "1a3c2bm0xx0q4gf98jiw74msmdf2fr8rbsdysd5ww9kqlzmsbr17")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-genomicranges" ,r-genomicranges) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-iranges" ,r-iranges) + ("r-nmf" ,r-nmf) + ("r-plyr" ,r-plyr) + ("r-pracma" ,r-pracma) + ("r-reshape2" ,r-reshape2) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (home-page "http://bioconductor.org/packages/MutationalPatterns/") + (synopsis "Package for extracting and visualizing mutational patterns in +SNV data") + (description "This package provides an extensive toolset for the +characterization and visualization of a wide range of mutational patterns +in base substitution data.") + (license license:expat))) + (define-public emboss (package (name "emboss") -- 2.10.1