From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: Mark H Weaver <mhw@netris.org>
Cc: guix-devel@gnu.org
Subject: Re: [PATCH] gnu: Add samtools
Date: Sat, 13 Dec 2014 09:19:11 +0100 [thread overview]
Message-ID: <87y4qcj728.fsf@mango.localdomain> (raw)
In-Reply-To: <87k31wysbs.fsf@netris.org>
Mark H Weaver writes:
> This built successfully on x86_64, but on i686 its test suite shows 87
> failures ("SAM files differ"). See:
>
> http://hydra.gnu.org/build/173180
> http://hydra.gnu.org/build/173180/log/raw
Apparently, these 87 test failures on non-64-bit architectures are
upstream problems with the test data for version 1.1. According to the
developers the test data does not actually comply with the SAM specs,
see <https://github.com/samtools/samtools/pull/307> and the linked
discussion.
This has been fixed in later commits, but there hasn't been a new
release yet.
Can we disable the test suite for certain architectures? Or would they
have to be disabled completely?
next prev parent reply other threads:[~2014-12-13 8:19 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-12-11 14:48 [PATCH] gnu: Add samtools Ricardo Wurmus
2014-12-11 17:57 ` Ludovic Courtès
2014-12-12 9:48 ` Ricardo Wurmus
2014-12-12 22:55 ` Ludovic Courtès
2014-12-13 6:30 ` Mark H Weaver
2014-12-13 8:19 ` Ricardo Wurmus [this message]
2014-12-13 15:53 ` Ludovic Courtès
2014-12-13 16:30 ` Mark H Weaver
2014-12-13 17:04 ` Mark H Weaver
2014-12-15 11:36 ` Ricardo Wurmus
2014-12-15 22:12 ` Ludovic Courtès
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