From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:470:142:3::10]:41786) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jRHSo-0000DM-NL for guix-patches@gnu.org; Wed, 22 Apr 2020 11:39:02 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jRHSo-00012S-82 for guix-patches@gnu.org; Wed, 22 Apr 2020 11:39:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:41397) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jRHSn-00011u-SG for guix-patches@gnu.org; Wed, 22 Apr 2020 11:39:01 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1jRHSn-0001v8-PS for guix-patches@gnu.org; Wed, 22 Apr 2020 11:39:01 -0400 Subject: [bug#40691] [PATCH v2 1/1] gnu: Add gromacs. Resent-Message-ID: From: Ludovic =?UTF-8?Q?Court=C3=A8s?= References: <87k12b15ki.fsf@gnu.org> <36e8a145-1ca8-c380-9864-dbf8b1fd53cb@gmail.com> Date: Wed, 22 Apr 2020 17:38:09 +0200 In-Reply-To: <36e8a145-1ca8-c380-9864-dbf8b1fd53cb@gmail.com> (Vincent Legoll's message of "Tue, 21 Apr 2020 00:15:05 +0200") Message-ID: <87y2qnv8da.fsf@gnu.org> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: Vincent Legoll Cc: 40691@debbugs.gnu.org Hi Vincent, Vincent Legoll skribis: > From 650247f97a56f2967d068ee8b1911fae6412ce4d Mon Sep 17 00:00:00 2001 > From: Vincent Legoll > Date: Sat, 18 Apr 2020 00:14:56 +0200 > Subject: [PATCH] gnu: Add gromacs. > > * gnu/packages/bioinformatics.scm (gromacs): New variable. This v2 looks alright to me, but I got this test failure on x86_64: --8<---------------cut here---------------start------------->8--- Start 13: HardwareUnitTests 13/52 Test #13: HardwareUnitTests ...................***Failed 0.04 sec [=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D] Running 5 tests from 2 test cases. [----------] Global test environment set-up. [----------] 1 test from CpuInfoTest [ RUN ] CpuInfoTest.SupportLevel [ OK ] CpuInfoTest.SupportLevel (0 ms) [----------] 1 test from CpuInfoTest (0 ms total) [----------] 4 tests from HardwareTopologyTest [ RUN ] HardwareTopologyTest.Execute [ OK ] HardwareTopologyTest.Execute (6 ms) [ RUN ] HardwareTopologyTest.HwlocExecute /tmp/guix-build-gromacs-2020.1.drv-0/gromacs-2020.1/src/gromacs/hardware/te= sts/hardwaretopology.cpp:88: Failure Expected: (hwTop.supportLevel()) >=3D (gmx::HardwareTopology::SupportLevel:= :Basic), actual: 4-byte object <01-00 00-00> vs 4-byte object <02-00 00-00> Cannot determine basic hardware topology from hwloc. GROMACS will still work, but it might affect your performance for large nodes. Please mail gmx-developers@gromacs.org so we can try to fix it. [ FAILED ] HardwareTopologyTest.HwlocExecute (5 ms) [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (6 ms) [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (5 ms) [----------] 4 tests from HardwareTopologyTest (22 ms total) [----------] Global test environment tear-down [=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D] 5 tests from 2 test cases ran. (22 ms tota= l) [ PASSED ] 4 tests. [ FAILED ] 1 test, listed below: [ FAILED ] HardwareTopologyTest.HwlocExecute 1 FAILED TEST [=E2=80=A6] The following tests FAILED: 13 - HardwareUnitTests (Failed) Errors while running CTest make: *** [Makefile:99: test] Error 8 --8<---------------cut here---------------end--------------->8--- Could you check what the test is doing? It may be reasonable to just skip it. Thanks, Ludo=E2=80=99.