* Re: 01/01: gnu: bedtools: Update to 2.27.0.
[not found] ` <20171206181438.821D0204F7@vcs0.savannah.gnu.org>
@ 2017-12-08 5:57 ` Mark H Weaver
2017-12-08 13:11 ` Ricardo Wurmus
0 siblings, 1 reply; 4+ messages in thread
From: Mark H Weaver @ 2017-12-08 5:57 UTC (permalink / raw)
To: guix-devel
Hi,
rekado@elephly.net (Ricardo Wurmus) writes:
> rekado pushed a commit to branch master
> in repository guix.
>
> commit 0d9824cc127f045d32c22d0c75df46d97cb61624
> Author: Ricardo Wurmus <rekado@elephly.net>
> Date: Wed Dec 6 19:12:16 2017 +0100
>
> gnu: bedtools: Update to 2.27.0.
>
> * gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0.
> [arguments]: Remove custom "install" phase; specify prefix.
The standard 'install' phase seems to have failed on Hydra:
https://hydra.gnu.org/build/2389354
--8<---------------cut here---------------start------------->8---
starting phase `install'
make: *** No rule to make target 'install'. Stop.
phase `install' failed after 0.0 seconds
builder for `/gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv' failed with exit code 1
@ build-failed /gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv - 1 builder for `/gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv' failed with exit code 1
--8<---------------cut here---------------end--------------->8---
Any idea what happened here?
Mark
^ permalink raw reply [flat|nested] 4+ messages in thread* Re: 01/01: gnu: bedtools: Update to 2.27.0.
2017-12-08 5:57 ` 01/01: gnu: bedtools: Update to 2.27.0 Mark H Weaver
@ 2017-12-08 13:11 ` Ricardo Wurmus
2017-12-08 18:06 ` Mark H Weaver
0 siblings, 1 reply; 4+ messages in thread
From: Ricardo Wurmus @ 2017-12-08 13:11 UTC (permalink / raw)
To: Mark H Weaver; +Cc: guix-devel
Mark H Weaver <mhw@netris.org> writes:
> Hi,
>
> rekado@elephly.net (Ricardo Wurmus) writes:
>
>> rekado pushed a commit to branch master
>> in repository guix.
>>
>> commit 0d9824cc127f045d32c22d0c75df46d97cb61624
>> Author: Ricardo Wurmus <rekado@elephly.net>
>> Date: Wed Dec 6 19:12:16 2017 +0100
>>
>> gnu: bedtools: Update to 2.27.0.
>>
>> * gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0.
>> [arguments]: Remove custom "install" phase; specify prefix.
>
> The standard 'install' phase seems to have failed on Hydra:
>
> https://hydra.gnu.org/build/2389354
>
> --8<---------------cut here---------------start------------->8---
> starting phase `install'
> make: *** No rule to make target 'install'. Stop.
> phase `install' failed after 0.0 seconds
> builder for `/gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv' failed with exit code 1
> @ build-failed /gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv - 1 builder for `/gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv' failed with exit code 1
> --8<---------------cut here---------------end--------------->8---
“builder for … 2.18.0”? This should be version 2.27.0 and worked fine
on at least three machines here.
Is hydra confused?
--
Ricardo
GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC
https://elephly.net
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: 01/01: gnu: bedtools: Update to 2.27.0.
2017-12-08 13:11 ` Ricardo Wurmus
@ 2017-12-08 18:06 ` Mark H Weaver
2017-12-09 12:02 ` Ricardo Wurmus
0 siblings, 1 reply; 4+ messages in thread
From: Mark H Weaver @ 2017-12-08 18:06 UTC (permalink / raw)
To: Ricardo Wurmus; +Cc: guix-devel
Hi Ricardo,
Ricardo Wurmus <rekado@elephly.net> writes:
> Mark H Weaver <mhw@netris.org> writes:
>
>> rekado@elephly.net (Ricardo Wurmus) writes:
>>
>>> rekado pushed a commit to branch master
>>> in repository guix.
>>>
>>> commit 0d9824cc127f045d32c22d0c75df46d97cb61624
>>> Author: Ricardo Wurmus <rekado@elephly.net>
>>> Date: Wed Dec 6 19:12:16 2017 +0100
>>>
>>> gnu: bedtools: Update to 2.27.0.
>>>
>>> * gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0.
>>> [arguments]: Remove custom "install" phase; specify prefix.
>>
>> The standard 'install' phase seems to have failed on Hydra:
>>
>> https://hydra.gnu.org/build/2389354
>>
>> --8<---------------cut here---------------start------------->8---
>> starting phase `install'
>> make: *** No rule to make target 'install'. Stop.
>> phase `install' failed after 0.0 seconds
>> builder for `/gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv' failed with exit code 1
>> @ build-failed
>> /gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv - 1
>> builder for
>> `/gnu/store/fq59s5x7kxn8sq9wl62334bacpjgj1b3-bedtools-2.18.0.drv'
>> failed with exit code 1
>> --8<---------------cut here---------------end--------------->8---
>
> “builder for … 2.18.0”? This should be version 2.27.0 and worked fine
> on at least three machines here.
I see now that there's a 'bedtools-2.18' package that inherits from the
main 'bedtools'. 'bedtools-2.18', apparently needed by 'ribotaper', was
broken by your changes to 'bedtools'.
Mark
^ permalink raw reply [flat|nested] 4+ messages in thread* Re: 01/01: gnu: bedtools: Update to 2.27.0.
2017-12-08 18:06 ` Mark H Weaver
@ 2017-12-09 12:02 ` Ricardo Wurmus
0 siblings, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2017-12-09 12:02 UTC (permalink / raw)
To: Mark H Weaver; +Cc: guix-devel
Mark H Weaver <mhw@netris.org> writes:
>> “builder for … 2.18.0”? This should be version 2.27.0 and worked fine
>> on at least three machines here.
>
> I see now that there's a 'bedtools-2.18' package that inherits from the
> main 'bedtools'. 'bedtools-2.18', apparently needed by 'ribotaper', was
> broken by your changes to 'bedtools'.
Thank you. This is now fixed with commit 83b9d121a.
--
Ricardo
GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC
https://elephly.net
^ permalink raw reply [flat|nested] 4+ messages in thread
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[not found] <20171206181437.15273.96102@vcs0.savannah.gnu.org>
[not found] ` <20171206181438.821D0204F7@vcs0.savannah.gnu.org>
2017-12-08 5:57 ` 01/01: gnu: bedtools: Update to 2.27.0 Mark H Weaver
2017-12-08 13:11 ` Ricardo Wurmus
2017-12-08 18:06 ` Mark H Weaver
2017-12-09 12:02 ` Ricardo Wurmus
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