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Resent-From: Vagrant Cascadian Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 08 Mar 2024 20:31:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69579 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69579@debbugs.gnu.org Cc: ngraves@ngraves.fr Received: via spool by 69579-submit@debbugs.gnu.org id=B69579.170992982911699 (code B ref 69579); Fri, 08 Mar 2024 20:31:02 +0000 Received: (at 69579) by debbugs.gnu.org; 8 Mar 2024 20:30:29 +0000 Received: from localhost ([127.0.0.1]:59690 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rigrN-00032a-54 for submit@debbugs.gnu.org; Fri, 08 Mar 2024 15:30:29 -0500 Received: from cascadia.aikidev.net ([173.255.214.101]:37888) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rigrK-00032A-Eb for 69579@debbugs.gnu.org; Fri, 08 Mar 2024 15:30:27 -0500 Received: from localhost (unknown [IPv6:2600:3c01:e000:21:7:77:0:50]) (Authenticated sender: vagrant@cascadia.debian.net) by cascadia.aikidev.net (Postfix) with ESMTPSA id A586D1AD81; Fri, 8 Mar 2024 12:29:44 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=debian.org; s=1.vagrant.user; t=1709929784; bh=CUb3RQUJmouED0eGBZ71heNd35QHXan0ZaeNAtZAqtA=; h=From:To:Cc:Subject:In-Reply-To:References:Date:From; b=c25jOTaBmxCovnhDyFELRzbrH7fNrmJP6GE2dXsZwT1P4pfBJ/hPmp7pa873BHh+u TkAmJ0SGJrUQlhNEMp8XoajG+F8Svjfp4npmdBvba3D5rlZ0VedDSoaEOPOUV0FjRX ejZBNWRpfnZP34HfADGM31HPgN++fn/tbh72N5V2qGuIv+CSslwFEyNpsFv5FUrhzU GKa1PlnAWPZ5mfS/NCvs4t09usfzUDS1ATLxKwPMjKpsSl7KTWp0IOA+QEm2vUD/gZ +8G/5QroHLAr5BqMxYul/kJs4c0gV/wiwtTfo57nL4ew0t9B0IF/P1rQl5SvmsulKA ydlVIsAoezPrg== From: Vagrant Cascadian In-Reply-To: <20240306093803.4725-1-ngraves@ngraves.fr> References: <20240306093803.4725-1-ngraves@ngraves.fr> Date: Fri, 08 Mar 2024 12:29:41 -0800 Message-ID: <87ttlgbh6y.fsf@wireframe> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Scanner: mx12.migadu.com X-Migadu-Spam-Score: -3.38 X-Spam-Score: -3.38 X-Migadu-Queue-Id: 61F161F6A9 X-TUID: ZiEmbYN3jXce --=-=-= Content-Type: text/plain Content-Transfer-Encoding: quoted-printable On 2024-03-06, Nicolas Graves wrote: > * gnu/packages/python-xyz.scm (python-joblib): Update to 1.3.2. > [build-system]: Update to pyproject-build-system. > [arguments] > <#:phases>: Remove check phase. > <#:test-flags>: Keep former test flag. > [propagated-inputs]: Add python-psutil. > > Change-Id: Ide110a19431b1d26e1d7dd8d1adc3b3f0f417749 > --- > gnu/packages/python-xyz.scm | 22 ++++++++-------------- > 1 file changed, 8 insertions(+), 14 deletions(-) > > diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm > index 46232d3c98..122dca6e4e 100644 > --- a/gnu/packages/python-xyz.scm > +++ b/gnu/packages/python-xyz.scm > @@ -6169,26 +6169,20 @@ (define-public python-pystitcher > (define-public python-joblib > (package > (name "python-joblib") > - (version "1.1.1") > + (version "1.3.2") > (source (origin > (method url-fetch) > (uri (pypi-uri "joblib" version)) > (sha256 > (base32 > - "0019p280s2k941mihl67l7y6amwx86639xp3zvpsg1lmyish67rh"))= )) > - (build-system python-build-system) > + "1cbjjzsh9hzaqr2cqja95673p7j88b8bd02hjpkq8xz147k6by4j"))= )) > + (build-system pyproject-build-system) > (arguments > - `(#:phases > - (modify-phases %standard-phases > - (replace 'check > - (lambda* (#:key tests? #:allow-other-keys) > - (when tests? > - (setenv "JOBLIB_MULTIPROCESSING" "0") > - (invoke "pytest" "-v" "joblib" > - ;; We disable this test to avoid having to depend= on ipython/jupyter > - "-k" "not test_parallel_call_cached_function_defi= ned_in_jupyter"))))))) > - (native-inputs > - (list python-pytest)) > + (list > + #:test-flags ; disabled to avoid having to depend on ipython/jupy= ter > + #~(list "-k" "not test_parallel_call_cached_function_defined_in_ju= pyter"))) > + (native-inputs (list python-pytest)) > + (propagated-inputs (list python-psutil)) > (home-page "https://joblib.readthedocs.io/") > (synopsis "Using Python functions as pipeline jobs") > (description > --=20 > 2.41.0 I did a local test build, and tried to build the moderately large list of dependents (~90 if I recall), which seems to fix some builds and introduces some new failures, and some still fail in both cases... with python-joblib 1.3.2 patch: guix build: error: build of `/gnu/store/1f7fjigxbran1bn1lwvy4v7vfdfz09rj-python-pingouin-0.5.2.drv', `/gnu/store/4g2r98m4d5zkwvlgghdqgvnda8p5b8lf-tadbit-1.0.1-1.5c4c1dd.drv', `/gnu/store/8gkvizln2kjpdjn4m89vws9xpj3f62dw-python-scikit-allel-1.3.5.drv', `/gnu/store/cm2dr4npm0bn9w7xiyrfizcq097laibw-python-pyts-0.13.0.drv', `/gnu/store/h5l1cymbzrz2havw6ygn0gafxwvf5k9m-python-matplotlib-documentatio= n-3.8.2.drv', `/gnu/store/ijg5hbhwj3h89bzh0n9l8zrg595bnscz-python-openturns-1.21.3.drv', `/gnu/store/n0f7flida4sag8ifsvmczg4r33r07ry8-python-pytorch-geometric-2.4.0= .drv', `/gnu/store/yl5rndzgfprfr0lpcrhdwmvix61zyccr-python-poliastro-0.17.0.drv' failed without python-joblib 1.3.2 patch: guix build: error: build of `/gnu/store/rhd4p3n7ih0apdbqn552dvgf67ljmj5s-python-pingouin-0.5.2.drv', `/gnu/store/mdcf9g773mz96397fpy7hbhj624svdai-python-scikit-allel-1.3.5.drv', `/gnu/store/7b2px2nkw02i62zbc8izh5wlc08bvpp3-python-matplotlib-documentatio= n-3.5.2.drv', `/gnu/store/36hdl27cw8gb9s7alf3ginmqk40lzjzm-python-xgboost-1.5.2.drv', `/gnu/store/jja4pvcnsxd63mb6jxlilkyjjf0a524m-python-hicexplorer-3.7.2.drv', `/gnu/store/mqzg965f7qhiz1rk93yqlq5p6p93h30j-python-episcanpy-0.4.0.drv', `/gnu/store/r4bx6mx0bkhk25zq4g91wma0s5ll016q-python-multivelo-0.1.2.drv', `/gnu/store/wrpm94hkilphkznif8nzan8gblaflrqp-python-ikarus-0.0.2.drv' failed --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iHUEARYKAB0WIQRlgHNhO/zFx+LkXUXcUY/If5cWqgUCZet1NQAKCRDcUY/If5cW qjWZAP9M0RFOGaQ/ye8Lv6yeEaNud3uw/KJnWGdSYx+U0u6OcAD/edC9cyiIbUrP 37hikpmcFDrottH1A3L4xfRh22M4bAs= =mQsU -----END PGP SIGNATURE----- --=-=-=--