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* [PATCH] gnu: Add r-genomationdata.
@ 2016-05-23 14:57 Ricardo Wurmus
  2016-05-23 18:09 ` Efraim Flashner
  0 siblings, 1 reply; 6+ messages in thread
From: Ricardo Wurmus @ 2016-05-23 14:57 UTC (permalink / raw)
  To: guix-devel

* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fbaae12..51c371c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5002,6 +5002,32 @@ genomic feature data as long as it has minimal information on the locations of
 genomic intervals.  In addition, it can use BAM or BigWig files as input.")
     (license license:artistic2.0)))
 
+(define-public r-genomationdata
+  (package
+    (name "r-genomationdata")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://bioconductor.org/packages/"
+                                  "release/data/experiment/src/contrib/"
+                                  "genomationData_" version ".tar.gz"))
+              (sha256
+               (base32
+                "1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79"))))
+    (build-system r-build-system)
+    (arguments `(#:substitutable? #f))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "http://bioinformatics.mdc-berlin.de/genomation/")
+    (synopsis "Experimental data for use with the genomation package")
+    (description
+     "This package contains experimental genetic data for use with the
+genomation package.  Included are Chip Seq, Methylation and Cage data,
+downloaded from Encode.")
+    (license license:gpl3+)))
+
 (define-public r-org-hs-eg-db
   (package
     (name "r-org-hs-eg-db")
-- 
2.7.3

^ permalink raw reply related	[flat|nested] 6+ messages in thread

end of thread, other threads:[~2016-05-31 14:31 UTC | newest]

Thread overview: 6+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2016-05-23 14:57 [PATCH] gnu: Add r-genomationdata Ricardo Wurmus
2016-05-23 18:09 ` Efraim Flashner
2016-05-24  6:36   ` Ricardo Wurmus
2016-05-24  7:09     ` Efraim Flashner
2016-05-24  9:52     ` Ludovic Courtès
2016-05-31 14:30       ` Ricardo Wurmus

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