* Package installation problem
@ 2016-09-06 8:09 Roel Janssen
2016-09-06 8:16 ` Roel Janssen
0 siblings, 1 reply; 5+ messages in thread
From: Roel Janssen @ 2016-09-06 8:09 UTC (permalink / raw)
To: help-guix
Dear Guix,
I'm running into a problem I cannot solve. I attached the command and
its output. So, I have a Guix installation with a custom store path.
I've succesfully installed about ~70 packages with it, until I hit this.
I used the Git version at fea1422e273ba5ca7640ecbbfbf352703ef7cda8 (Sun
Sep 4 23:07:51 2016 -0400).
How can I further try to figure out what's wrong?
Thanks for your time.
Kind regards,
Roel Janssen
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Package installation problem
2016-09-06 8:09 Package installation problem Roel Janssen
@ 2016-09-06 8:16 ` Roel Janssen
2016-09-06 12:01 ` Alex Kost
0 siblings, 1 reply; 5+ messages in thread
From: Roel Janssen @ 2016-09-06 8:16 UTC (permalink / raw)
To: help-guix
[-- Attachment #1: output.log --]
[-- Type: text/plain, Size: 1545 bytes --]
[rjanssen2@hpc-mirror-001 ~]$ guix package -i macs --fallback --profile=/hpc/cog_bioinf/guix-state/guix/profiles/per-pipeline/atac-seq/guix-profile
Backtrace:
In guix/packages.scm:
1015: 19 [bag->derivation # # #]
In srfi/srfi-1.scm:
578: 18 [map #<procedure 1f02840 at guix/packages.scm:1017:30 (t-768298)> #]
In guix/packages.scm:
824: 17 [expand-input # # # ...]
779: 16 [cache! #<weak-key-hash-table 14873e0 363/443> # # ...]
1083: 15 [thunk]
1015: 14 [bag->derivation # # #]
In srfi/srfi-1.scm:
578: 13 [map #<procedure 664ebd0 at guix/packages.scm:1017:30 (t-768298)> #]
In guix/packages.scm:
827: 12 [expand-input # # # ...]
779: 11 [cache! #<weak-key-hash-table 14873e0 363/443> # # ...]
1083: 10 [thunk]
1015: 9 [bag->derivation # # #]
In srfi/srfi-1.scm:
578: 8 [map #<procedure 6672690 at guix/packages.scm:1017:30 (t-768298)> #]
In guix/packages.scm:
839: 7 [expand-input # # # ...]
In guix/store.scm:
1182: 6 [run-with-store # ...]
In guix/packages.scm:
1185: 5 [#<procedure 6685f60 at guix/packages.scm:1185:5 (state)> #]
In guix/store.scm:
1105: 4 [#<procedure 669b420 at guix/store.scm:1104:28 (store)> #]
In guix/packages.scm:
779: 3 [cache! #<weak-key-hash-table 14873e0 363/443> () ...]
1083: 2 [thunk]
779: 1 [cache! #<weak-key-hash-table 14870e0 383/443> () ...]
863: 0 [thunk]
guix/packages.scm:863:12: In procedure thunk:
guix/packages.scm:863:12: Throw to key `match-error' with args `("match" "no matching pattern")'.
[-- Attachment #2: Type: text/plain, Size: 501 bytes --]
Here's the attachment.
Roel Janssen writes:
> Dear Guix,
>
> I'm running into a problem I cannot solve. I attached the command and
> its output. So, I have a Guix installation with a custom store path.
> I've succesfully installed about ~70 packages with it, until I hit this.
>
> I used the Git version at fea1422e273ba5ca7640ecbbfbf352703ef7cda8 (Sun
> Sep 4 23:07:51 2016 -0400).
>
> How can I further try to figure out what's wrong?
> Thanks for your time.
>
> Kind regards,
> Roel Janssen
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Package installation problem
2016-09-06 8:16 ` Roel Janssen
@ 2016-09-06 12:01 ` Alex Kost
2016-09-06 12:09 ` Roel Janssen
0 siblings, 1 reply; 5+ messages in thread
From: Alex Kost @ 2016-09-06 12:01 UTC (permalink / raw)
To: Roel Janssen; +Cc: help-guix
Roel Janssen (2016-09-06 11:16 +0300) wrote:
> [rjanssen2@hpc-mirror-001 ~]$ guix package -i macs --fallback
> --profile=/hpc/cog_bioinf/guix-state/guix/profiles/per-pipeline/atac-seq/guix-profile
> Backtrace:
> In guix/packages.scm:
> 1015: 19 [bag->derivation # # #]
> In srfi/srfi-1.scm:
> 578: 18 [map #<procedure 1f02840 at guix/packages.scm:1017:30 (t-768298)> #]
> In guix/packages.scm:
> 824: 17 [expand-input # # # ...]
> 779: 16 [cache! #<weak-key-hash-table 14873e0 363/443> # # ...]
> 1083: 15 [thunk]
> 1015: 14 [bag->derivation # # #]
> In srfi/srfi-1.scm:
> 578: 13 [map #<procedure 664ebd0 at guix/packages.scm:1017:30 (t-768298)> #]
> In guix/packages.scm:
> 827: 12 [expand-input # # # ...]
> 779: 11 [cache! #<weak-key-hash-table 14873e0 363/443> # # ...]
> 1083: 10 [thunk]
> 1015: 9 [bag->derivation # # #]
> In srfi/srfi-1.scm:
> 578: 8 [map #<procedure 6672690 at guix/packages.scm:1017:30 (t-768298)> #]
> In guix/packages.scm:
> 839: 7 [expand-input # # # ...]
> In guix/store.scm:
> 1182: 6 [run-with-store # ...]
> In guix/packages.scm:
> 1185: 5 [#<procedure 6685f60 at guix/packages.scm:1185:5 (state)> #]
> In guix/store.scm:
> 1105: 4 [#<procedure 669b420 at guix/store.scm:1104:28 (store)> #]
> In guix/packages.scm:
> 779: 3 [cache! #<weak-key-hash-table 14873e0 363/443> () ...]
> 1083: 2 [thunk]
> 779: 1 [cache! #<weak-key-hash-table 14870e0 383/443> () ...]
> 863: 0 [thunk]
>
> guix/packages.scm:863:12: In procedure thunk:
> guix/packages.scm:863:12: Throw to key `match-error' with args `("match" "no matching pattern")'.
Did you try "make clean-go" (and "make" again)? Perhaps it will help.
--
Alex
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Package installation problem
2016-09-06 12:01 ` Alex Kost
@ 2016-09-06 12:09 ` Roel Janssen
2016-09-07 8:03 ` Ludovic Courtès
0 siblings, 1 reply; 5+ messages in thread
From: Roel Janssen @ 2016-09-06 12:09 UTC (permalink / raw)
To: Alex Kost; +Cc: help-guix
Alex Kost writes:
> Roel Janssen (2016-09-06 11:16 +0300) wrote:
>
>> [rjanssen2@hpc-mirror-001 ~]$ guix package -i macs --fallback
>> --profile=/hpc/cog_bioinf/guix-state/guix/profiles/per-pipeline/atac-seq/guix-profile
>> Backtrace:
>> In guix/packages.scm:
>> 1015: 19 [bag->derivation # # #]
>> In srfi/srfi-1.scm:
>> 578: 18 [map #<procedure 1f02840 at guix/packages.scm:1017:30 (t-768298)> #]
>> In guix/packages.scm:
>> 824: 17 [expand-input # # # ...]
>> 779: 16 [cache! #<weak-key-hash-table 14873e0 363/443> # # ...]
>> 1083: 15 [thunk]
>> 1015: 14 [bag->derivation # # #]
>> In srfi/srfi-1.scm:
>> 578: 13 [map #<procedure 664ebd0 at guix/packages.scm:1017:30 (t-768298)> #]
>> In guix/packages.scm:
>> 827: 12 [expand-input # # # ...]
>> 779: 11 [cache! #<weak-key-hash-table 14873e0 363/443> # # ...]
>> 1083: 10 [thunk]
>> 1015: 9 [bag->derivation # # #]
>> In srfi/srfi-1.scm:
>> 578: 8 [map #<procedure 6672690 at guix/packages.scm:1017:30 (t-768298)> #]
>> In guix/packages.scm:
>> 839: 7 [expand-input # # # ...]
>> In guix/store.scm:
>> 1182: 6 [run-with-store # ...]
>> In guix/packages.scm:
>> 1185: 5 [#<procedure 6685f60 at guix/packages.scm:1185:5 (state)> #]
>> In guix/store.scm:
>> 1105: 4 [#<procedure 669b420 at guix/store.scm:1104:28 (store)> #]
>> In guix/packages.scm:
>> 779: 3 [cache! #<weak-key-hash-table 14873e0 363/443> () ...]
>> 1083: 2 [thunk]
>> 779: 1 [cache! #<weak-key-hash-table 14870e0 383/443> () ...]
>> 863: 0 [thunk]
>>
>> guix/packages.scm:863:12: In procedure thunk:
>> guix/packages.scm:863:12: Throw to key `match-error' with args `("match" "no matching pattern")'.
>
> Did you try "make clean-go" (and "make" again)? Perhaps it will help.
Thanks a lot.. I hadn't thought of doing a complete recompile of Guix
:). It seems to work now.
Thanks!
Kind regards,
Roel Janssen
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Package installation problem
2016-09-06 12:09 ` Roel Janssen
@ 2016-09-07 8:03 ` Ludovic Courtès
0 siblings, 0 replies; 5+ messages in thread
From: Ludovic Courtès @ 2016-09-07 8:03 UTC (permalink / raw)
To: Roel Janssen; +Cc: Alex Kost, help-guix
Roel Janssen <roel@gnu.org> skribis:
> Alex Kost writes:
>
>> Roel Janssen (2016-09-06 11:16 +0300) wrote:
>>
>>> [rjanssen2@hpc-mirror-001 ~]$ guix package -i macs --fallback
[...]
>>> guix/packages.scm:863:12: In procedure thunk:
>>> guix/packages.scm:863:12: Throw to key `match-error' with args `("match" "no matching pattern")'.
>>
>> Did you try "make clean-go" (and "make" again)? Perhaps it will help.
>
> Thanks a lot.. I hadn't thought of doing a complete recompile of Guix
> :). It seems to work now.
Yeah, this happens when there’s an ABI change, such as changes in the
fields of a record type.
Ludo’.
^ permalink raw reply [flat|nested] 5+ messages in thread
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2016-09-06 8:09 Package installation problem Roel Janssen
2016-09-06 8:16 ` Roel Janssen
2016-09-06 12:01 ` Alex Kost
2016-09-06 12:09 ` Roel Janssen
2016-09-07 8:03 ` Ludovic Courtès
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