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From: ludo@gnu.org (Ludovic Courtès)
To: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Cc: guix-devel <guix-devel@gnu.org>
Subject: Re: [PATCH] Add idr.
Date: Tue, 16 Jun 2015 17:36:56 +0200	[thread overview]
Message-ID: <87h9q7u0kn.fsf@gnu.org> (raw)
In-Reply-To: <idjr3pcouxz.fsf@bimsb-sys02.mdc-berlin.net> (Ricardo Wurmus's message of "Tue, 16 Jun 2015 11:37:28 +0200")

Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> skribis:

> From 815a5e24f43f61c4beb243d98beb0659bbd74b3a Mon Sep 17 00:00:00 2001
> From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
> Date: Tue, 16 Jun 2015 11:33:26 +0200
> Subject: [PATCH] gnu: Add idr.
>
> * gnu/packages/bioinformatics.scm (idr): New variable.

[...]

> +          'install 'wrap-program
> +          (lambda* (#:key outputs #:allow-other-keys)
> +            (let ((out (assoc-ref %outputs "out"))
> +                  (path (getenv "PYTHONPATH")))
> +              (wrap-program (string-append out "/bin/idr")
> +                `("PYTHONPATH" ":" prefix (,path))))

Taking $PYTHONPATH as is has the effect of keeping a reference to Cython
and to setuptools, which may not be what you want, given that they are
listed as ‘native-inputs’.

Should it instead explicitly list SciPy, NumPy, and Matplotlib?

Thanks,
Ludo’.

  reply	other threads:[~2015-06-16 15:37 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2015-06-16  9:37 [PATCH] Add idr Ricardo Wurmus
2015-06-16 15:36 ` Ludovic Courtès [this message]
2015-06-17 10:51   ` Ricardo Wurmus
2015-06-21 21:13     ` Ludovic Courtès

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