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Sun, 12 Jun 2022 20:22:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:34581) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1o0XqE-0002cr-IH for bug-guix@gnu.org; Sun, 12 Jun 2022 20:22:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1o0XqE-0001zG-8s for bug-guix@gnu.org; Sun, 12 Jun 2022 20:22:02 -0400 X-Loop: help-debbugs@gnu.org Subject: bug#55936: dockerd fails to start on boot Resent-From: Luciano Laratelli Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Mon, 13 Jun 2022 00:22:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 55936 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 55936@debbugs.gnu.org X-Debbugs-Original-To: bug-guix@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.16550796977603 (code B ref -1); Mon, 13 Jun 2022 00:22:02 +0000 Received: (at submit) by debbugs.gnu.org; 13 Jun 2022 00:21:37 +0000 Received: from localhost ([127.0.0.1]:56711 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o0Xpo-0001yY-Gs for submit@debbugs.gnu.org; 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Sun, 12 Jun 2022 22:57:49 +0000 (UTC) From: Luciano Laratelli Date: Sun, 12 Jun 2022 18:56:38 -0400 User-agent: mu4e 1.6.11; emacs 28.1.50 Message-ID: <87h74pa3rp.fsf@kong.network> MIME-Version: 1.0 Content-Type: multipart/alternative; boundary="=-=-=" X-Proofpoint-ORIG-GUID: g8HBIKMeMDjT0tJslj7xaKuoitFCxLQR X-Proofpoint-GUID: g8HBIKMeMDjT0tJslj7xaKuoitFCxLQR X-Proofpoint-Virus-Version: vendor=fsecure engine=1.1.170-22c6f66c430a71ce266a39bfe25bc2903e8d5c8f:6.0.138, 18.0.790, 17.11.62.513.0000000 definitions=2022-01-12_02:2020-02-14_02, 2022-01-12_02, 2021-12-02_01 signatures=0 X-Proofpoint-Spam-Details: rule=notspam policy=default score=0 mlxlogscore=593 bulkscore=0 clxscore=1030 suspectscore=0 adultscore=0 phishscore=0 malwarescore=0 mlxscore=0 spamscore=0 classifier=spam adjust=0 reason=mlx scancount=1 engine=8.12.0-2202240000 definitions=main-2206120109 Received-SPF: pass client-ip=17.57.155.19; envelope-from=luciano@laratel.li; helo=qs51p00im-qukt01080102.me.com X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_LOW=-0.7, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Mailman-Approved-At: Sun, 12 Jun 2022 20:21:35 -0400 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Mailman-Approved-At: Sun, 12 Jun 2022 20:27:26 -0400 X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; 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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=laratel.li header.s=sig1 header.b=hGAS3WdT; dmarc=none; spf=pass (aspmx1.migadu.com: domain of "bug-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="bug-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -1.39 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=laratel.li header.s=sig1 header.b=hGAS3WdT; dmarc=none; spf=pass (aspmx1.migadu.com: domain of "bug-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="bug-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 6147E2A78C X-Spam-Score: -1.39 X-Migadu-Scanner: scn0.migadu.com X-TUID: jw9IohW0Y9HO --=-=-= Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Hi, hope you are doing well. I=E2=80=99m running Guix System and am seeing that `dockerd' fails to start= on boot due to not being able to find `containerd': $ sudo tail /var/log/docker.log 2022-06-12 18:25:29 time=3D=E2=80=9C2022-06-12T18:25:29.969005384-04:00=E2= =80=9D level=3Dwarning msg=3D=E2=80=9CError (Unable to complete atomic oper= ation, key modified) deleting object [endpoint 062e6856b7776daf35f1d570dc7e= 055d3c0f3eefc0f58c5e279eba20035c8e9e eb10082295c7a53d882e36d93a8b5eb20e980a= 5950c4a67fa03444274448b232], retrying=E2=80=A6.=E2=80=9D 2022-06-12 18:25:30 time=3D=E2=80=9C2022-06-12T18:25:30.068910364-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CRemoving stale sandbox e35667a7ef1441bce= d213cf035efc9d6c71a0dce7f8941e3fbb63f5a27265bca (91314e5594f72585f9df121ba1= 6cc8d67c4e1fcb91fc3c7b9b0660aed1b3054a)=E2=80=9D 2022-06-12 18:25:30 time=3D=E2=80=9C2022-06-12T18:25:30.080685302-04:00=E2= =80=9D level=3Dwarning msg=3D=E2=80=9CError (Unable to complete atomic oper= ation, key modified) deleting object [endpoint 062e6856b7776daf35f1d570dc7e= 055d3c0f3eefc0f58c5e279eba20035c8e9e 825f4a6f68b1b81b24b2edc0b382deca116e72= a75e6207036f24e18ba6434c81], retrying=E2=80=A6.=E2=80=9D 2022-06-12 18:25:30 time=3D=E2=80=9C2022-06-12T18:25:30.143624227-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CDefault bridge (docker0) is assigned wit= h an IP address 172.17.0.0/16. Daemon option =E2=80=93bip can be used to se= t a preferred IP address=E2=80=9D 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.400700443-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CLoading containers: done.=E2=80=9D 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.689183684-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CDocker daemon=E2=80=9D commit=3Dv19.03.1= 5 graphdriver(s)=3Doverlay2 version=3D19.03.15-ce 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.691171101-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CDaemon has completed initialization=E2= =80=9D 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.961049886-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CAPI listen on /var/run/docker.sock=E2=80= =9D 2022-06-12 18:43:43 time=3D=E2=80=9C2022-06-12T18:43:43.503118343-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CStarting up=E2=80=9D 2022-06-12 18:43:43 failed to start containerd: exec: =E2=80=9Ccontainerd= =E2=80=9D: executable file not found in $PATH $ sudo docker ps Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the = docker daemon running? $ sudo herd status dockerd Status of dockerd: It is stopped. It is enabled. Provides (dockerd). Requires (containerd dbus-system elogind file-system-/sys/fs/cgroup/blkio= file-system-/sys/fs/cgroup/cpu file-system-/sys/fs/cgroup/cpuset file-syst= em-/sys/fs/cgroup/devices file-system-/sys/fs/cgroup/memory file-system-/sy= s/fs/cgroup/pids networking udev). Conflicts with (). Will be respawned. I can start it myself, though: $ sudo herd start dockerd Service dockerd has been started. I found a [past issue] on this list with someone experiencing a similar pro= blem, but adding `kmod' as suggested did not resolve the issue on my end.. Here=E2=80=99s my config.scm - I=E2=80=99ve redcated my host name and file-= system/swap-devices blocks, but everything else is verbatim what the machine is running. (use-modules (gnu) (nongnu packages linux) (nongnu system linux-initrd)) (use-service-modules desktop networking ssh xorg docker) (operating-system (kernel linux) (firmware (list linux-firmware)) (initrd microcode-initrd) (locale =E2=80=9Cen_US.utf8=E2=80=9D) (timezone =E2=80=9CAmerica/New_York=E2=80=9D) (keyboard-layout (keyboard-layout =E2=80=9Cus=E2=80=9D)) (users (cons* (user-account (name =E2=80=9Cluciano=E2=80=9D) (comment =E2=80=9CLuciano Laratelli=E2=80=9D) (group =E2=80=9Cusers=E2=80=9D) (home-directory =E2=80=9C/home/luciano=E2=80=9D) (supplementary-groups =E2=80=99(=E2=80=9Cwheel=E2=80=9D =E2=80=9Cnetdev=E2=80=9D = =E2=80=9Caudio=E2=80=9D =E2=80=9Cvideo=E2=80=9D))) %base-user-accounts)) (packages (append (list (specification->package =E2=80=9Cst=E2=80=9D) (specification->package =E2=80=9Cnss-certs=E2=80=9D) (specification->package =E2=80=9Cdocker=E2=80=9D) (specification->package =E2=80=9Cdocker-compose=E2=80=9D) (specification->package =E2=80=9Ccontainerd=E2=80=9D) (specification->package =E2=80=9Ckmod=E2=80=9D) (specification->package =E2=80=9Cvim=E2=80=9D) (specification->package =E2=80=9Cemacs-no-x-toolkit=E2=80=9D) (specification->package =E2=80=9Cparted=E2=80=9D)) %base-packages)) (services (append (list (service openssh-service-type (openssh-configuration (password-authentication? #f))) (service network-manager-service-type) (service wpa-supplicant-service-type) (service docker-service-type) (elogind-service) (set-xorg-configuration (xorg-configuration (keyboard-layout keyboard-layout)))) (modify-services %base-services (guix-service-type config =3D> (guix-configuration (inherit config) (substitute-urls (append (list "=E2=80=9D) %default-substitute-urls)) (authorized-keys (append (list (plain-file =E2=80=9Csigning-key.pub=E2=80=9D =E2=80=9C (public-key (ecc (curve Ed25519) (q #C1FD53E5D4CE971933EC50C9F307AE2171A2D3B52C804642A7= A35F84F3A4EA98#) ) )=E2=80=9D)) %default-authorized-guix-keys))))))) (bootloader (bootloader-configuration (bootloader grub-efi-bootloader) (targets =E2=80=99(=E2=80=9C/boot/efi=E2=80=9D)) (keyboard-layout keyboard-layout)))) I=E2=80=99m not sure how to debug this issue any further and would apprecia= te some pointers there. Thank you, Luciano [past issue] --=-=-= Content-Type: text/html; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable

Hi, hope you are doing well.

I=E2=80=99m running Guix System and am seeing that docke= rd fails to start on boot due to not being able to find containerd:

$ sudo tail /var/log/docker.log 2022-06-12 18:25:29 time=3D=E2=80=9C2022-06-12T18:25:29.969005384-04:00=E2= =80=9D level=3Dwarning msg=3D=E2=80=9CError (Unable to complete atomic oper= ation, key modified) deleting object [endpoint 062e6856b7776daf35f1d570dc7e= 055d3c0f3eefc0f58c5e279eba20035c8e9e eb10082295c7a53d882e36d93a8b5eb20e980a= 5950c4a67fa03444274448b232], retrying=E2=80=A6.=E2=80=9D 2022-06-12 18:25:30 time=3D=E2=80=9C2022-06-12T18:25:30.068910364-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CRemoving stale sandbox e35667a7ef1441bce= d213cf035efc9d6c71a0dce7f8941e3fbb63f5a27265bca (91314e5594f72585f9df121ba1= 6cc8d67c4e1fcb91fc3c7b9b0660aed1b3054a)=E2=80=9D 2022-06-12 18:25:30 time=3D=E2=80=9C2022-06-12T18:25:30.080685302-04:00=E2= =80=9D level=3Dwarning msg=3D=E2=80=9CError (Unable to complete atomic oper= ation, key modified) deleting object [endpoint 062e6856b7776daf35f1d570dc7e= 055d3c0f3eefc0f58c5e279eba20035c8e9e 825f4a6f68b1b81b24b2edc0b382deca116e72= a75e6207036f24e18ba6434c81], retrying=E2=80=A6.=E2=80=9D 2022-06-12 18:25:30 time=3D=E2=80=9C2022-06-12T18:25:30.143624227-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CDefault bridge (docker0) is assigned wit= h an IP address 172.17.0.0/16. Daemon option =E2=80=93bip can be used to se= t a preferred IP address=E2=80=9D 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.400700443-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CLoading containers: done.=E2=80=9D 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.689183684-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CDocker daemon=E2=80=9D commit=3Dv19.03.1= 5 graphdriver(s)=3Doverlay2 version=3D19.03.15-ce 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.691171101-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CDaemon has completed initialization=E2= =80=9D 2022-06-12 18:25:31 time=3D=E2=80=9C2022-06-12T18:25:31.961049886-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CAPI listen on /var/run/docker.sock=E2=80= =9D 2022-06-12 18:43:43 time=3D=E2=80=9C2022-06-12T18:43:43.503118343-04:00=E2= =80=9D level=3Dinfo msg=3D=E2=80=9CStarting up=E2=80=9D 2022-06-12 18:43:43 failed to start containerd: exec: =E2=80=9Ccontainerd= =E2=80=9D: executable file not found in $PATH

$ sudo docker ps Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the = docker daemon running?

$ sudo herd status dockerd Status of dockerd: It is stopped. It is enabled. Provides (dockerd). Requires (containerd dbus-system elogind file-system-/sys/fs/cgroup/blkio= file-system-/sys/fs/cgroup/cpu file-system-/sys/fs/cgroup/cpuset file-syst= em-/sys/fs/cgroup/devices file-system-/sys/fs/cgroup/memory file-system-/sy= s/fs/cgroup/pids networking udev). Conflicts with (). Will be respawned.

I can start it myself, though:

$ sudo herd start dockerd Service dockerd has been started.

I found a past issue on this list with someone experiencing a similar= problem, but adding kmod as suggested did not resolve the = issue on my end..

Here=E2=80=99s my config.scm - I=E2=80=99ve redcated my host name and file-= system/swap-devices blocks, but everything else is verbatim what the machine is running.

(use-modules (gnu) (nongnu packages linux) (nongnu system linux-initrd))

(use-service-modules desktop networking ssh xorg docker)

(operating-system (kernel linux) (firmware (list linux-firmware)) (initrd microcode-initrd) (locale =E2=80=9Cen_US.utf8=E2=80=9D) (timezone =E2=80=9CAmerica/New_York=E2=80=9D) (keyboard-layout (keyboard-layout =E2=80=9Cus=E2=80=9D))

(users (cons* (user-account (name =E2=80=9Cluciano=E2=80=9D) (comment =E2=80=9CLuciano Laratelli=E2=80=9D) (group =E2=80=9Cusers=E2=80=9D) (home-directory =E2=80=9C/home/luciano=E2=80=9D) (supplementary-groups =E2=80=99(=E2=80=9Cwheel=E2=80=9D =E2=80=9Cnetdev=E2=80=9D = =E2=80=9Caudio=E2=80=9D =E2=80=9Cvideo=E2=80=9D))) %base-user-accounts)) (packages (append (list (specification->package =E2=80=9Cst=E2=80=9D) (specification->package =E2=80=9Cnss-certs=E2=80=9D) (specification->package =E2=80=9Cdocker=E2=80=9D) (specification->package =E2=80=9Cdocker-compose=E2=80=9D) (specification->package =E2=80=9Ccontainerd=E2=80=9D) (specification->package =E2=80=9Ckmod=E2=80=9D) (specification->package =E2=80=9Cvim=E2=80=9D) (specification->package =E2=80=9Cemacs-no-x-toolkit=E2=80=9D) (specification->package =E2=80=9Cparted=E2=80=9D)) %base-packages)) (services (append (list (service openssh-service-type (openssh-configuration (password-authentication? #f)))

(service network-manager-service-type) (service wpa-supplicant-service-type) (service docker-service-type) (elogind-service) (set-xorg-configuration (xorg-configuration (keyboard-layout keyboard-layout)))) (modify-services %base-services (guix-service-type config =3D> (guix-configuration (inherit config) (substitute-urls (append (list "https://substitutes.nonguix.org=E2=80=9D) %default-substitute-urls)) (authorized-keys (append (list (plain-file =E2=80=9Csigning-key.pub=E2=80=9D =E2=80=9C (public-key (ecc (curve Ed25519) (q #C1FD53E5D4CE971933EC50C9F307AE2171A2D3B52C804642A7= A35F84F3A4EA98#) ) )=E2=80=9D)) %default-authorized-guix-keys))))))) (bootloader (bootloader-configuration (bootloader grub-efi-bootloader) (targets =E2=80=99(=E2=80=9C/boot/efi=E2=80=9D)) (keyboard-layout keyboard-layout))))

I=E2=80=99m not sure how to debug this issue any further and would apprecia= te some pointers there.

Thank you,

Luciano

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