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* [bug#56023] [PATCH] gnu: Add r-alphabeta.
@ 2022-06-16 16:35 Mădălin Ionel Patrașcu
  2022-11-24 14:20 ` bug#56023: " Ricardo Wurmus
  0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-06-16 16:35 UTC (permalink / raw)
  To: 56023

* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
---
 gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..cd9923a946 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,46 @@ (define-public r-agimicrorna
 objects are used so that other packages could be used as well.")
     (license license:gpl3)))
 
+(define-public r-alphabeta
+  (package
+    (name "r-alphabeta")
+    (version "1.10.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AlphaBeta" version))
+              (sha256
+               (base32
+                "1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag"))))
+    (properties `((upstream-name . "AlphaBeta")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocparallel
+           r-data-table
+           r-dplyr
+           r-expm
+           r-ggplot2
+           r-gtools
+           r-igraph
+           r-optimx
+           r-plotly
+           r-stringr))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AlphaBeta")
+    (synopsis
+     "Estimating epimutation rates and spectra from DNA methylations in plants")
+    (description
+     "The package @code{AlphaBeta} is a computational method for estimating
+epimutation rates and spectra from high-throughput DNA methylation data in plants.
+The method has been specifically designed to:
+@itemize
+@item
+analyze @emph{germline} epimutations in the context of multi-generational mutation
+accumulation lines;
+@item
+analyze @emph{somatic} epimutations in the context of plant development and aging.
+@end itemize")
+    (license license:gpl3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
-- 
2.36.1





^ permalink raw reply related	[flat|nested] 2+ messages in thread

* bug#56023: [PATCH] gnu: Add r-alphabeta.
  2022-06-16 16:35 [bug#56023] [PATCH] gnu: Add r-alphabeta Mădălin Ionel Patrașcu
@ 2022-11-24 14:20 ` Ricardo Wurmus
  0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2022-11-24 14:20 UTC (permalink / raw)
  To: 56023-done

Applied, thanks!

-- 
Ricardo




^ permalink raw reply	[flat|nested] 2+ messages in thread

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2022-06-16 16:35 [bug#56023] [PATCH] gnu: Add r-alphabeta Mădălin Ionel Patrașcu
2022-11-24 14:20 ` bug#56023: " Ricardo Wurmus

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