[bug#57410] [PATCH] gnu: Add eccodes.

[bug#57410] [PATCH] gnu: Add eccodes.

[Antero Mejr via Guix-patches via]

* gnu/packages/geo.scm (eccodes): New variable.
---
 gnu/packages/geo.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 0c869fdebb..f1151fa95c 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -64,6 +64,7 @@ (define-module (gnu packages geo)
   #:use-module (gnu packages boost)
   #:use-module (gnu packages build-tools)
   #:use-module (gnu packages check)
+  #:use-module (gnu packages cmake)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages cpp)
   #:use-module (gnu packages cups)
@@ -76,6 +77,7 @@ (define-module (gnu packages geo)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages fonts)
   #:use-module (gnu packages fontutils)
+  #:use-module (gnu packages gcc)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages glib)
@@ -112,6 +114,7 @@ (define-module (gnu packages geo)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages qt)
   #:use-module (gnu packages readline)
+  #:use-module (gnu packages shells)
   #:use-module (gnu packages swig)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages textutils)
@@ -2797,3 +2800,35 @@ (define-public libaec
 point representations are not directly supported, they can also be efficiently
 coded by grouping exponents and mantissa.")
     (license license:bsd-2)))
+
+(define-public eccodes
+  (package
+    (name "eccodes")
+    (version "2.27.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/ecmwf/eccodes")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1hd4lli6g4m77rdfqwq8kxqpgn9na7lhv0j47w0sw9ihy8qllq41"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list #:configure-flags #~(list "-DECBUILD_DISABLE_NEW_DTAGS=OFF"
+                                     "-DENABLE_PNG=ON")))
+    (native-inputs (list ecbuild gfortran perl))
+    (inputs (list oksh libaec libpng netcdf openjpeg))
+    (home-page "https://confluence.ecmwf.int/display/ECC")
+    (synopsis "Encoder/decoder for GRIB and BUFR meteorological data files")
+    (description "ecCodes is a package developed by ECMWF which provides an
+application programming interface and a set of tools for decoding and encoding
+messages in the following formats:
+
+@itemize
+@item WMO FM-92 GRIB edition 1 and edition 2
+@item WMO FM-94 BUFR edition 3 and edition 4
+@item WMO GTS abbreviated header (only decoding)
+@end itemize")
+    (license license:asl2.0)))
-- 
2.37.2

[bug#57410] [PATCH] gnu: Add ecbuild.

[Antero Mejr via Guix-patches via]

* gnu/packages/cmake.scm (ecbuild): New variable.
---
 gnu/packages/cmake.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/cmake.scm b/gnu/packages/cmake.scm
index cf930c57fc..aa89d4815c 100644
--- a/gnu/packages/cmake.scm
+++ b/gnu/packages/cmake.scm
@@ -32,6 +32,7 @@ (define-module (gnu packages cmake)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix gexp)
   #:use-module (guix git-download)
   #:use-module (guix utils)
   #:use-module (guix deprecation)
@@ -49,6 +50,7 @@ (define-module (gnu packages cmake)
   #:use-module (gnu packages kde-frameworks)
   #:use-module (gnu packages libevent)
   #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages perl)
   #:use-module (gnu packages serialization)
   #:use-module (gnu packages sphinx)
   #:use-module (gnu packages texinfo)
@@ -406,3 +408,33 @@ (define-public emacs-cmake-mode
     (description "@code{cmakeos-mode} provides an Emacs major mode for editing
 Cmake files.  It supports syntax highlighting, indenting and refilling of
 comments.")))
+
+(define-public ecbuild
+  ;; when using set the configure flag "-DECBUILD_DISABLE_NEW_DTAGS=OFF"
+  ;; otherwise validate-runpath build step will fail when building Guix packages
+  (package
+    (name "ecbuild")
+    (version "3.7.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/ecmwf/ecbuild")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1mcjdqwvkzli7xj2wlnr4hshfh3wi5rs585f9nvqjfpgwvn0ym14"))
+              (modules '((guix build utils)))
+              (snippet #~(substitute* "bin/ecbuild"
+                           (("cmake=\\$\\{cmakebin:=cmake\\}")
+                            (string-append "cmake=${cmakebin:="
+                                           #$cmake-minimal "/bin/cmake}"))))))
+    (build-system cmake-build-system)
+    (native-inputs (list perl))
+    (inputs (list cmake-minimal))
+    (home-page "https://ecbuild.readthedocs.io/en/latest/")
+    (synopsis "CMake wrapper and collection of macros")
+    (description "ecBuild is built on top of CMake and consists of a set of
+macros as well as a wrapper around CMake.  Calling @code{ecbuild $SRC_DIR} is
+equivalent to @code{cmake -DCMAKE_MODULE_PATH=$ECBUILD_DIR/cmake $SRC_DIR}.")
+    (license license:asl2.0)))
-- 
2.37.2

[bug#57410] [PATCH] gnu: Add libaec.

[Antero Mejr via Guix-patches via]

* gnu/packages/geo.scm (libaec): New variable.
---
 gnu/packages/geo.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 66c97d3d6a..f23a8c1f4e 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -2773,3 +2773,27 @@ (define-public gplates
 reconstructions of geological and paleogeographic features through geological
 time.  Interactively visualize vector, raster and volume data.")
     (license license:gpl2+)))
+
+(define-public libaec
+  (package
+    (name "libaec")
+    (version "1.0.6")
+    (home-page "https://gitlab.dkrz.de/k202009/libaec")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "14myrmmiz9z6wgxqywf3a63cq514vrzsd6z4zvpwigvawlk30iip"))))
+    (build-system cmake-build-system)
+    (synopsis "Adaptive Entropy Coding library")
+    (description "Libaec provides fast lossless compression of 1 up to 32 bit
+wide signed or unsigned integers (samples).  The library achieves best results
+for low entropy data as often encountered in space imaging instrument data or
+numerical model output from weather or climate simulations.  While floating
+point representations are not directly supported, they can also be efficiently
+coded by grouping exponents and mantissa.")
+    (license license:bsd-2)))
-- 
2.37.2

[bug#57410] [PATCH] gnu: Add ecbuild.

[Maxime Devos]

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On 25-08-2022 19:27, Antero Mejr via Guix-patches via wrote:
> +              (method git-fetch)
> +              (uri (git-reference
> +                    (url"https://github.com/ecmwf/ecbuild")
> +                    (commit version)))
> +              (file-name (git-file-name name version))
> +              (sha256
> +               (base32
> +                "1mcjdqwvkzli7xj2wlnr4hshfh3wi5rs585f9nvqjfpgwvn0ym14"))
> +              (modules '((guix build utils)))
> +              (snippet #~(substitute* "bin/ecbuild"
> +                           (("cmake=\\$\\{cmakebin:=cmake\\}")
> +                            (string-append "cmake=${cmakebin:="
> +                                           #$cmake-minimal "/bin/cmake}"))))))

This 'source' is only usable inside Guix as it embeds store items, which 
makes "guix build --source" less useful for sharing source code (see: 
(guix)Snippets versus Phases).

Try doing this in a snippet instead.

Greetings,
Maxime.


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[bug#57410] [PATCH] gnu: Add ecbuild.

[Antero Mejr via Guix-patches via]

* gnu/packages/cmake.scm (ecbuild): New variable.
---
Patch Guix-specific paths in a build step rather than a snippet (from review).

 gnu/packages/cmake.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

diff --git a/gnu/packages/cmake.scm b/gnu/packages/cmake.scm
index cf930c57fc..be4271f84c 100644
--- a/gnu/packages/cmake.scm
+++ b/gnu/packages/cmake.scm
@@ -32,6 +32,7 @@ (define-module (gnu packages cmake)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix gexp)
   #:use-module (guix git-download)
   #:use-module (guix utils)
   #:use-module (guix deprecation)
@@ -49,6 +50,7 @@ (define-module (gnu packages cmake)
   #:use-module (gnu packages kde-frameworks)
   #:use-module (gnu packages libevent)
   #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages perl)
   #:use-module (gnu packages serialization)
   #:use-module (gnu packages sphinx)
   #:use-module (gnu packages texinfo)
@@ -406,3 +408,36 @@ (define-public emacs-cmake-mode
     (description "@code{cmakeos-mode} provides an Emacs major mode for editing
 Cmake files.  It supports syntax highlighting, indenting and refilling of
 comments.")))
+
+(define-public ecbuild
+  ;; when using set the configure flag "-DECBUILD_DISABLE_NEW_DTAGS=OFF"
+  ;; otherwise validate-runpath build step will fail when building Guix packages
+  (package
+    (name "ecbuild")
+    (version "3.7.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/ecmwf/ecbuild")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1mcjdqwvkzli7xj2wlnr4hshfh3wi5rs585f9nvqjfpgwvn0ym14"))))
+    (arguments
+     (list #:phases #~(modify-phases %standard-phases
+                        (add-after 'unpack 'patch-cmake-binary-path
+                          (lambda _
+                            (substitute* "bin/ecbuild"
+                              (("cmake=\\$\\{cmakebin:=cmake\\}")
+                               (string-append "cmake=${cmakebin:="
+                                              #$cmake-minimal "/bin/cmake}"))))))))
+    (build-system cmake-build-system)
+    (native-inputs (list perl))
+    (inputs (list cmake-minimal))
+    (home-page "https://ecbuild.readthedocs.io/en/latest/")
+    (synopsis "CMake wrapper and collection of macros")
+    (description "ecBuild is built on top of CMake and consists of a set of
+macros as well as a wrapper around CMake.  Calling @code{ecbuild $SRC_DIR} is
+equivalent to @code{cmake -DCMAKE_MODULE_PATH=$ECBUILD_DIR/cmake $SRC_DIR}.")
+    (license license:asl2.0)))
-- 
2.37.2

[bug#57410] [PATCH] gnu: Add ecbuild.

[Vagrant Cascadian]

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retitle 57410 gnu: Add ecbuild.
thanks

On 2022-08-29, Antero Mejr wrote:
> * gnu/packages/cmake.scm (ecbuild): New variable.

The other two new packages proposed in this bug, eccodes and libaec,
have already been merged into guix:

1504edd84f1a0b4afda11cab99edc602d82085c1 gnu: Add eccodes.
d03b6fb0e3f0b81b35a9b35b89c213c144c59fe6 gnu: Add libaec.

Retitling bug to reflect outstanding issue.

live well,
  vagrant

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