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dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=R4da8+0l; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none) X-Migadu-Spam-Score: -2.81 X-Spam-Score: -2.81 X-TUID: H7hb2r4RngDz --=-=-= Content-Type: text/plain And here is a second patch adding documentation to gdcm 3.0.20 --=-=-= Content-Type: text/x-patch; charset=utf-8 Content-Disposition: attachment; filename=0001-gnu-gdcm-Add-documentation.patch Content-Transfer-Encoding: quoted-printable >From 9ec1adbf72f3b122a484fe449e3b950fcee4b221 Mon Sep 17 00:00:00 2001 From: =3D?UTF-8?q?Tor-bj=3DC3=3DB6rn=3D20Claesson?=3D Date: Sat, 14 Jan 2023 19:03:39 +0200 Subject: [PATCH] gnu: gdcm: Add documentation. --- gnu/packages/bioinformatics.scm | 17 ++++++++++++++++- 1 file changed, 16 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.= scm index 5b886526ad..aa54ec7ff7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -93,6 +93,7 @@ (define-module (gnu packages bioinformatics) #:use-module (gnu packages gawk) #:use-module (gnu packages gcc) #:use-module (gnu packages gd) + #:use-module (gnu packages ghostscript) #:use-module (gnu packages golang) #:use-module (gnu packages glib) #:use-module (gnu packages graph) @@ -17854,8 +17855,16 @@ (define-public gdcm (base32 "1w78cmm9q7aavs7svdkl4dgilcqk4yazci9m6x7icrssb7cj991i")))) (build-system cmake-build-system) + (outputs '("out" "doc")) (arguments (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-HOME + ;; The build spams =E2=80=98Fontconfig error: No writable= cache + ;; directories=E2=80=99 in a seemingly endless loop other= wise. + (lambda _ + (setenv "HOME" "/tmp")))) #:configure-flags #~(list "-DGDCM_BUILD_TESTING=3Dtrue" (string-append "-DCMAKE_CTEST_ARGUMENTS=3D-E;" @@ -17863,7 +17872,13 @@ (define-public gdcm "|TestElement2" "|TestSCUValidation" "|TestEcho" - "|TestFind'")))) + "|TestFind'") + "-DGDCM_DOCUMENTATION:BOOL=3DON" + "-DGDCM_PDF_DOCUMENTATION:BOOL=3DON" + (string-append "-DGDCM_INSTALL_DOC_DIR=3D" + #$output:doc "/share/doc/" #$name) + "-DGDCM_BUILD_DOCBOOK_MANPAGES:BOOL=3DOFF"))) ; TODO: need = =E2=80=98xsl-ns=E2=80=99 + (native-inputs (list doxygen ghostscript graphviz texlive)) (home-page "https://gdcm.sourceforge.net/wiki/index.php/Main_Page") (synopsis "Grassroots DICOM library") (description --=20 2.38.1 --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Cheers, Tor-bj=C3=B6rn Claesson --=-=-=--