From mboxrd@z Thu Jan 1 00:00:00 1970 From: ludo@gnu.org (Ludovic =?utf-8?Q?Court=C3=A8s?=) Subject: Re: [PATCH] gnu: Add samtools Date: Thu, 11 Dec 2014 18:57:38 +0100 Message-ID: <878uie6pd9.fsf@gnu.org> References: Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:44088) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Xz7zm-0006ex-C2 for guix-devel@gnu.org; Thu, 11 Dec 2014 12:57:51 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1Xz7zg-0002t4-Sm for guix-devel@gnu.org; Thu, 11 Dec 2014 12:57:46 -0500 Received: from hera.aquilenet.fr ([2a01:474::1]:45974) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Xz7zg-0002sQ-Mq for guix-devel@gnu.org; Thu, 11 Dec 2014 12:57:40 -0500 In-Reply-To: (Ricardo Wurmus's message of "Thu, 11 Dec 2014 15:48:22 +0100") List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Ricardo Wurmus Cc: guix-devel@gnu.org Ricardo Wurmus skribis: > * gnu/packages/bioinformatics.scm: New file > * gnu-system.am (GNU_SYSTEM_MODULES): Add it Perfect! [...] > + (synopsis "Efficient utilities on manipulating alignments in the SAM= format") What about =E2=80=9CUtilities to manipulate nucleotide sequence alignments= =E2=80=9D, to make it clearer that it=E2=80=99s bioinfo-related? > + (description > + "Samtools implements various utilities for post-processing alignmen= ts in > +the SAM, BAM, and CRAM formats, including indexing, variant calling (in > +conjunction with bcftools), and a simple alignment viewer.") Likewise, maybe replace =E2=80=9Calignments=E2=80=9D with =E2=80=9Cnucleoti= de sequence alignments=E2=80=9D or something to that effect? Thank you! Ludo=E2=80=99.