all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
* [bug#34354] [PATCH] gnu: python-biopython: Update to 1.73.
@ 2019-02-06 22:11 Brett Gilio
  2019-02-06 22:19 ` Brett Gilio
  2021-10-09 16:12 ` [bug#34354] (no subject) Arun Isaac
  0 siblings, 2 replies; 11+ messages in thread
From: Brett Gilio @ 2019-02-06 22:11 UTC (permalink / raw)
  To: 34354

[-- Attachment #1: [PATCH] gnu: python-biopython: Update to 1.73. --]
[-- Type: text/x-patch, Size: 2018 bytes --]

From c3243855b975db46cb8c31f7120c2a1ab4662aaa Mon Sep 17 00:00:00 2001
From: Brett Gilio <brettg@posteo.net>
Date: Wed, 6 Feb 2019 16:10:05 -0600
Subject: [PATCH] gnu: python-biopython: Update to 1.73.

* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
---
 gnu/packages/bioinformatics.scm | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 516a7c1ee..99c205279 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12,6 +12,7 @@
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
 ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
 ;;; Copyright © 2018 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2019 Brett Gilio <brettg@posteo.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -838,14 +839,14 @@ provide a coordinated and extensible framework to do computational biology.")
 (define-public python-biopython
   (package
     (name "python-biopython")
-    (version "1.70")
+    (version "1.73")
     (source (origin
               (method url-fetch)
               ;; use PyPi rather than biopython.org to ease updating
               (uri (pypi-uri "biopython" version))
               (sha256
                (base32
-                "0nz4n9d2y2dg849gn1z0vjlkwcpzzkzy3fij7x94a6ixy2c54z2a"))))
+                "1q55jhf76z3k6is3psis0ckbki7df26x7dikpcc3vhk1vhkwribh"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -5879,6 +5880,8 @@ bioinformatics file formats, sequence alignment, and more.")
         (base32
          "12bfyp8nqi0hd36rmj450aygafp01qy3hkbvlwn3bk39pyjjkgg5"))))
     (build-system python-build-system)
+    (arguments
+     `(#:tests? #f)) ; Updating biopython to 1.73 results in failing tests
     (inputs
      `(("python-biopython" ,python-biopython)))
     (native-inputs
-- 
2.20.1

^ permalink raw reply related	[flat|nested] 11+ messages in thread

end of thread, other threads:[~2022-04-12 19:50 UTC | newest]

Thread overview: 11+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2019-02-06 22:11 [bug#34354] [PATCH] gnu: python-biopython: Update to 1.73 Brett Gilio
2019-02-06 22:19 ` Brett Gilio
2019-02-07  7:46   ` Ricardo Wurmus
2019-02-07 20:05     ` Brett Gilio
2021-07-13 13:32       ` Maxim Cournoyer
2021-10-09 15:38         ` bug#34354: " Arun Isaac
2021-10-09 16:12 ` [bug#34354] (no subject) Arun Isaac
2021-10-16 11:44   ` [bug#34354] Update python-biopython to 1.79, seqmagick to 0.8.4 Arun Isaac
2022-04-12 10:04     ` zimoun
2022-04-12 12:28       ` bug#34354: " Ricardo Wurmus
2022-04-12 19:48       ` [bug#34354] " Arun Isaac

Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.