[bug#51305] [PATCH 0/4] More julia packages

[bug#51305] [PATCH 0/4] More julia packages

[Efraim Flashner]

I figured out where earcut is from finally and I'm skipping it for now.
The package providing libearcut.so is from Julia's Yggdrasil itself so
I'm not sure about it. TimeZones.jl is rough, I need to figure out how
to generate portions of it from our tzdata package.

Efraim Flashner (4):
  gnu: Add julia-gr-jll.
  gnu: Add julia-gr.
  gnu: Add julia-geometrybasics.
  gnu: Add julia-infinity.

 gnu/packages/julia-jll.scm |  50 +++++++++++++++++++
 gnu/packages/julia-xyz.scm | 100 +++++++++++++++++++++++++++++++++++++
 2 files changed, 150 insertions(+)


base-commit: 19d3cfec72720a4a1339be3d14f4d88ae5bd59f4
-- 
2.33.1

[bug#51305] [PATCH 1/4] gnu: Add julia-gr-jll.

[Efraim Flashner]

* gnu/packages/julia-jll.scm (julia-gr-jll): New variable.
---
 gnu/packages/julia-jll.scm | 50 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)

diff --git a/gnu/packages/julia-jll.scm b/gnu/packages/julia-jll.scm
index d3677d0a33..51643819ae 100644
--- a/gnu/packages/julia-jll.scm
+++ b/gnu/packages/julia-jll.scm
@@ -36,6 +36,7 @@ (define-module (gnu packages julia-jll)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gnupg)
+  #:use-module (gnu packages graphics)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages image)
   #:use-module (gnu packages imagemagick)
@@ -522,6 +523,55 @@ (define-public julia-glib-jll
     (description "This package provides a wrapper for the glib library.")
     (license license:expat)))
 
+(define-public julia-gr-jll
+  (package
+    (name "julia-gr-jll")
+    (version "0.58.1+0")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaBinaryWrappers/GR_jll.jl")
+               (commit (string-append "GR-v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "16m22n0wh86v3lh0im2pc9bg381djbmqji5hjx42j6aaz634gqiq"))))
+    (build-system julia-build-system)
+    (arguments
+     '(#:tests? #f  ; no runtests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'override-binary-path
+           (lambda* (#:key inputs #:allow-other-keys)
+             (map
+               (lambda (wrapper)
+                 (substitute* wrapper
+                   (("generate_wrapper_header.*")
+                    (string-append
+                      "generate_wrapper_header(\"GR\", \""
+                      (assoc-ref inputs "gr-framework") "\")\n"))))
+               ;; There's a Julia file for each platform, override them all
+               (find-files "src/wrappers/" "\\.jl$")))))))
+    (inputs
+     `(("gr-framework" ,gr-framework)))
+    (propagated-inputs
+     `(("julia-jllwrappers" ,julia-jllwrappers)
+       ("julia-bzip2-jll" ,julia-bzip2-jll)
+       ("julia-cairo-jll" ,julia-cairo-jll)
+       ("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
+       ("julia-fontconfig-jll" ,julia-fontconfig-jll)
+       ("julia-glfw-jll" ,julia-glfw-jll)
+       ("julia-jpegturbo-jll" ,julia-jpegturbo-jll)
+       ("julia-libpng-jll" ,julia-libpng-jll)
+       ("julia-libtiff-jll" ,julia-libtiff-jll)
+       ("julia-pixman-jll" ,julia-pixman-jll)
+       ("julia-qt5base-jll" ,julia-qt5base-jll)
+       ("julia-zlib-jll" ,julia-zlib-jll)))
+    (home-page "https://github.com/JuliaBinaryWrappers/GR_jll.jl")
+    (synopsis "GR framework library wrappers")
+    (description "This package provides a wrapper for the GR framework.")
+    (license license:expat)))
+
 (define-public julia-gumbo-jll
   (package
     (name "julia-gumbo-jll")
-- 
2.33.1

[bug#51305] [PATCH 0/4] More julia packages

[zimoun]

Hi,

On mer., 20 oct. 2021 at 15:51, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-jll.scm (julia-gr-jll): New variable.
> ---
>  gnu/packages/julia-jll.scm | 50 ++++++++++++++++++++++++++++++++++++++
>  1 file changed, 50 insertions(+)

LGTM, except...

> +    (inputs
> +     `(("gr-framework" ,gr-framework)))
> +    (propagated-inputs
> +     `(("julia-jllwrappers" ,julia-jllwrappers)
> +       ("julia-bzip2-jll" ,julia-bzip2-jll)
> +       ("julia-cairo-jll" ,julia-cairo-jll)
> +       ("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
> +       ("julia-fontconfig-jll" ,julia-fontconfig-jll)
> +       ("julia-glfw-jll" ,julia-glfw-jll)
> +       ("julia-jpegturbo-jll" ,julia-jpegturbo-jll)
> +       ("julia-libpng-jll" ,julia-libpng-jll)
> +       ("julia-libtiff-jll" ,julia-libtiff-jll)
> +       ("julia-pixman-jll" ,julia-pixman-jll)
> +       ("julia-qt5base-jll" ,julia-qt5base-jll)
> +       ("julia-zlib-jll" ,julia-zlib-jll)))

...is it possible to alphabetically sort?  I find easier for maintenance
later.  WDYT?

Cheers,
simon

[bug#51305] [PATCH 0/4] More julia packages

[Efraim Flashner]

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On Thu, Oct 21, 2021 at 03:01:55PM +0200, zimoun wrote:
> Hi,
> 
> On mer., 20 oct. 2021 at 15:51, Efraim Flashner <efraim@flashner.co.il> wrote:
> > * gnu/packages/julia-jll.scm (julia-gr-jll): New variable.
> > ---
> >  gnu/packages/julia-jll.scm | 50 ++++++++++++++++++++++++++++++++++++++
> >  1 file changed, 50 insertions(+)
> 
> LGTM, except...
> 
> > +    (inputs
> > +     `(("gr-framework" ,gr-framework)))
> > +    (propagated-inputs
> > +     `(("julia-jllwrappers" ,julia-jllwrappers)
> > +       ("julia-bzip2-jll" ,julia-bzip2-jll)
> > +       ("julia-cairo-jll" ,julia-cairo-jll)
> > +       ("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
> > +       ("julia-fontconfig-jll" ,julia-fontconfig-jll)
> > +       ("julia-glfw-jll" ,julia-glfw-jll)
> > +       ("julia-jpegturbo-jll" ,julia-jpegturbo-jll)
> > +       ("julia-libpng-jll" ,julia-libpng-jll)
> > +       ("julia-libtiff-jll" ,julia-libtiff-jll)
> > +       ("julia-pixman-jll" ,julia-pixman-jll)
> > +       ("julia-qt5base-jll" ,julia-qt5base-jll)
> > +       ("julia-zlib-jll" ,julia-zlib-jll)))
> 
> ...is it possible to alphabetically sort?  I find easier for maintenance
> later.  WDYT?

the julia-jllwrappers are intentionally at the top of the list because
then all the package jll packages are grouped together.

-- 
Efraim Flashner   <efraim@flashner.co.il>   רנשלפ םירפא
GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted

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[bug#51305] [PATCH 0/4] More julia packages

[zimoun]

Hi Efraim,

On Sun, 24 Oct 2021 at 09:16, Efraim Flashner <efraim@flashner.co.il> wrote:

> the julia-jllwrappers are intentionally at the top of the list because
> then all the package jll packages are grouped together.

It makes sense. :-)

Thanks,
simon

bug#51305: [PATCH 0/4] More julia packages

[Efraim Flashner]

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On Sun, Oct 24, 2021 at 09:54:22AM +0200, zimoun wrote:
> Hi Efraim,
> 
> On Sun, 24 Oct 2021 at 09:16, Efraim Flashner <efraim@flashner.co.il> wrote:
> 
> > the julia-jllwrappers are intentionally at the top of the list because
> > then all the package jll packages are grouped together.
> 
> It makes sense. :-)
> 
> Thanks,
> simon

Thanks for the reviews! Patches pushed.

-- 
Efraim Flashner   <efraim@flashner.co.il>   רנשלפ םירפא
GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted

[-- Attachment #2: signature.asc --]
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[bug#51305] [PATCH 2/4] gnu: Add julia-gr.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-gr): New variable.
---
 gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 58f58f36ec..1db5a1bc58 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1895,6 +1895,28 @@ (define-public julia-genericschur
 matrices the Schur form is often more useful.")
     (license license:expat)))
 
+(define-public julia-gr
+  (package
+    (name "julia-gr")
+    (version "0.58.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/jheinen/GR.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "18zxa1w2wmrf44c5l10qbh99zjdp7h94gxlymh47cf5kj5fc4xmx"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-gr-jll" ,julia-gr-jll)))
+    (home-page "https://github.com/jheinen/GR.jl")
+    (synopsis "Plotting for Julia based on GR")
+    (description "This module provides a Julia interface to GR, a framework for
+visualisation applications.")
+    (license license:expat)))
+
 (define-public julia-graphics
   (package
     (name "julia-graphics")
-- 
2.33.1

[bug#51305] [PATCH 3/4] gnu: Add julia-geometrybasics.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-geometrybasics): New variable.
---
 gnu/packages/julia-xyz.scm | 45 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 1db5a1bc58..74bec305f0 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1895,6 +1895,51 @@ (define-public julia-genericschur
 matrices the Schur form is often more useful.")
     (license license:expat)))
 
+(define-public julia-geometrybasics
+  (package
+    (name "julia-geometrybasics")
+    (version "0.4.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaGeometry/GeometryBasics.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "057j3hjpli3q5b98cqkpi4p10x2k9pyksrz62hjmv1kb5qzdvhsj"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'remove-earcut
+           (lambda _
+             (substitute* '("Project.toml"
+                            "src/GeometryBasics.jl")
+               ((".*EarCut.*") ""))
+             #t))
+         (add-after 'unpack 'skip-incompatible-test
+           (lambda _
+             (substitute* "test/runtests.jl"
+               (("@testset.*MetaT and heterogeneous data.*" all)
+                (string-append all "return\n")))
+             #t)))))
+    (propagated-inputs
+     `(("julia-itertools" ,julia-itertools)
+       ("julia-staticarrays" ,julia-staticarrays)
+       ("julia-structarrays" ,julia-structarrays)
+       ("julia-tables" ,julia-tables)))
+    (native-inputs
+     `(("julia-offsetarrays" ,julia-offsetarrays)))
+    (home-page "https://github.com/JuliaGeometry/GeometryBasics.jl")
+    (synopsis "Basic Geometry Types")
+    (description "This package aims to offer a standard set of Geometry types,
+which easily work with metadata, query frameworks on geometries and different
+memory layouts.  The aim is to create a solid basis for Graphics/Plotting,
+finite elements analysis, Geo applications, and general geometry manipulations
+- while offering a Julian API, that still allows performant C-interop.")
+    (license license:expat)))
+
 (define-public julia-gr
   (package
     (name "julia-gr")
-- 
2.33.1

[bug#51305] [PATCH 4/4] gnu: Add julia-infinity.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-infinity): New variable.
---
 gnu/packages/julia-xyz.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 74bec305f0..93fadf318c 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2448,6 +2448,39 @@ (define-public julia-indirectarrays
 indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
     (license license:expat)))
 
+(define-public julia-infinity
+  (package
+    (name "julia-infinity")
+    (version "0.2.4")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/cjdoris/Infinity.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1941lwvrdjnrynigzixxin3chpg1ba6xplvcwc89x0f6z658hwmm"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'remove-timezones.jl
+           (lambda _
+             (substitute* "test/runtests.jl"
+               (("using TimeZones.*") "")
+               ((".*infextendedtime.*") ""))
+             #t)))))
+    (propagated-inputs
+     `(("julia-requires" ,julia-requires)))
+    (native-inputs
+     `(("julia-compat" ,julia-compat)))
+    (home-page "https://docs.juliahub.com/Infinity/")
+    (synopsis "Representation of infinity in Julia")
+    (description "This package provides representations for infinity and
+negative infinity in Julia.")
+    (license license:expat)))
+
 (define-public julia-inifile
   (package
     (name "julia-inifile")
-- 
2.33.1

[bug#51305] [PATCH 0/4] More julia packages

[zimoun]

Hi Efraim,

On mer., 20 oct. 2021 at 15:48, Efraim Flashner <efraim@flashner.co.il> wrote:

> Efraim Flashner (4):
>   gnu: Add julia-gr-jll.
>   gnu: Add julia-gr.
>   gnu: Add julia-geometrybasics.
>   gnu: Add julia-infinity.

LGTM.  Except minor comment about julia-gr-jll.


Thanks,
simon