[bug#50490] [PATCH 0/5] Some julia packages

[bug#50490] [PATCH 0/5] Some julia packages

[Efraim Flashner]

Here are some julia packages. I'm still working on julia-documenter with
all the javascript it downloads at runtime, but these ones are ready.

Efraim Flashner (5):
  gnu: Add julia-quadgk.
  gnu: Add julia-measurements.
  gnu: Add julia-mlstyle.
  gnu: Add julia-pycall.
  gnu: Add julia-ansicoloredprinters.

 gnu/packages/julia-xyz.scm | 177 ++++++++++++++++++++++++++++++++++++-
 1 file changed, 176 insertions(+), 1 deletion(-)


base-commit: bae57cc7d2917c4a67e9afb68ed61ad7117ea7ea
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

Cool!

On Thu, 9 Sept 2021 at 20:20, Efraim Flashner <efraim@flashner.co.il> wrote:

> Here are some julia packages. I'm still working on julia-documenter with
> all the javascript it downloads at runtime, but these ones are ready.
>
> Efraim Flashner (5):
>   gnu: Add julia-quadgk.
>   gnu: Add julia-measurements.
>   gnu: Add julia-mlstyle.
>   gnu: Add julia-pycall.
>   gnu: Add julia-ansicoloredprinters.

Have you send this?

Cheers,
simon

[bug#50490] [PATCH 1/5] gnu: Add julia-quadgk.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
---
 gnu/packages/julia-xyz.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index a80964c2b0..bd6a296463 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2985,6 +2985,31 @@ everything from run time algorithm choice to code generation at compile time.")
 human-readable format.")
     (license license:expat)))
 
+(define-public julia-quadgk
+  (package
+    (name "julia-quadgk")
+    (version "2.4.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaMath/QuadGK.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-datastructures" ,julia-datastructures)))
+    (home-page "https://github.com/JuliaMath/QuadGK.jl")
+    (synopsis "Adaptive 1d numerical Gauss–Kronrod integration in Julia")
+    (description "This package provides support for one-dimensional numerical
+integration in Julia using adaptive Gauss-Kronrod quadrature.  The code was
+originally part of Base Julia.  It supports integration of arbitrary numeric
+types, including arbitrary precision (@code{BigFloat}), and even integration of
+arbitrary normed vector spaces (e.g. matrix-valued integrands).")
+    (license license:expat)))
+
 (define-public julia-quadmath
   (package
     (name "julia-quadmath")
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
> ---
>  gnu/packages/julia-xyz.scm | 25 +++++++++++++++++++++++++
>  1 file changed, 25 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index a80964c2b0..bd6a296463 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -2985,6 +2985,31 @@ everything from run time algorithm choice to code generation at compile time.")
>  human-readable format.")
>      (license license:expat)))
>
> +(define-public julia-quadgk
> +  (package
> +    (name "julia-quadgk")
> +    (version "2.4.1")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaMath/QuadGK.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
> +    (build-system julia-build-system)
> +    (propagated-inputs
> +     `(("julia-datastructures" ,julia-datastructures)))
> +    (home-page "https://github.com/JuliaMath/QuadGK.jl")
> +    (synopsis "Adaptive 1d numerical Gauss–Kronrod integration in Julia")

I would not write «in Julia».

> +    (description "This package provides support for one-dimensional numerical
> +integration in Julia using adaptive Gauss-Kronrod quadrature.  The code was
> +originally part of Base Julia.  It supports integration of arbitrary numeric
> +types, including arbitrary precision (@code{BigFloat}), and even integration of
> +arbitrary normed vector spaces (e.g. matrix-valued integrands).")
> +    (license license:expat)))

LGTM.

Cheers,
simon

[bug#50490] [PATCH 2/5] gnu: Add julia-measurements.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-measurements): New variable.
---
 gnu/packages/julia-xyz.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index bd6a296463..222f9f129e 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2433,6 +2433,37 @@ may include other factorizations such as the LQ factorization.")
 TLS} and cryptography C library for Julia.")
     (license license:expat)))
 
+(define-public julia-measurements
+  (package
+    (name "julia-measurements")
+    (version "2.6.0")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaPhysics/Measurements.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-calculus" ,julia-calculus)
+       ("julia-recipesbase" ,julia-recipesbase)
+       ("julia-requires" ,julia-requires)))
+    (native-inputs
+     `(("julia-specialfunctions" ,julia-specialfunctions)
+       ("julia-quadgk" ,julia-quadgk)
+       ("julia-unitful" ,julia-unitful)))
+    (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
+    (synopsis "Error propagation calculator and library")
+    (description "@code{Measurements.jl} is an error propagation calculator and
+library for physical measurements.  It supports real and complex numbers with
+uncertainty, arbitrary precision calculations, operations with arrays, and
+numerical integration.  The linear error propagation theory is employed to
+propagate the errors.")
+    (license license:expat)))
+
 (define-public julia-measures
   (package
     (name "julia-measures")
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-measurements): New variable.
> ---
>  gnu/packages/julia-xyz.scm | 31 +++++++++++++++++++++++++++++++
>  1 file changed, 31 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index bd6a296463..222f9f129e 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -2433,6 +2433,37 @@ may include other factorizations such as the LQ factorization.")
>  TLS} and cryptography C library for Julia.")
>      (license license:expat)))
>
> +(define-public julia-measurements
> +  (package
> +    (name "julia-measurements")
> +    (version "2.6.0")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaPhysics/Measurements.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
> +    (build-system julia-build-system)
> +    (propagated-inputs
> +     `(("julia-calculus" ,julia-calculus)
> +       ("julia-recipesbase" ,julia-recipesbase)
> +       ("julia-requires" ,julia-requires)))
> +    (native-inputs
> +     `(("julia-specialfunctions" ,julia-specialfunctions)
> +       ("julia-quadgk" ,julia-quadgk)
> +       ("julia-unitful" ,julia-unitful)))

Could we keep alphabetical sorted list?

> +    (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
> +    (synopsis "Error propagation calculator and library")
> +    (description "@code{Measurements.jl} is an error propagation calculator and
> +library for physical measurements.  It supports real and complex numbers with
> +uncertainty, arbitrary precision calculations, operations with arrays, and
> +numerical integration.  The linear error propagation theory is employed to
> +propagate the errors.")
> +    (license license:expat)))

LGTM.

Cheers,
simon

[bug#50490] [PATCH 3/5] gnu: Add julia-mlstyle.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
---
 gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 222f9f129e..3616ffd006 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2508,6 +2508,28 @@ resolving them into absolute units.")
 with @code{missing} values in Julia.")
     (license license:expat)))
 
+(define-public julia-mlstyle
+  (package
+    (name "julia-mlstyle")
+    (version "0.4.10")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/thautwarm/MLStyle.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
+    (build-system julia-build-system)
+    (native-inputs
+     `(("julia-datastructures" ,julia-datastructures)))
+    (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
+    (synopsis "Julia functional programming infrastructures")
+    (description "This package provides consistent and extensible functional
+programming infrastructures, and metaprogramming facilities.")
+    (license license:expat)))
+
 (define-public julia-mocking
   (package
     (name "julia-mocking")
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
> ---
>  gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
>  1 file changed, 22 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 222f9f129e..3616ffd006 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -2508,6 +2508,28 @@ resolving them into absolute units.")
>  with @code{missing} values in Julia.")
>      (license license:expat)))
>
> +(define-public julia-mlstyle
> +  (package
> +    (name "julia-mlstyle")
> +    (version "0.4.10")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/thautwarm/MLStyle.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
> +    (build-system julia-build-system)
> +    (native-inputs
> +     `(("julia-datastructures" ,julia-datastructures)))
> +    (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
> +    (synopsis "Julia functional programming infrastructures")
> +    (description "This package provides consistent and extensible functional
> +programming infrastructures, and metaprogramming facilities.")
> +    (license license:expat)))

LGTM.  I notice that the package raises warning at the check phase.

Cheers,
simon

[bug#50490] [PATCH 4/5] gnu: Add julia-pycall.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-pycall): New variable.
---
 gnu/packages/julia-xyz.scm | 79 +++++++++++++++++++++++++++++++++++++-
 1 file changed, 78 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 3616ffd006..1038d3f80b 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -26,7 +26,9 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system julia)
   #:use-module (gnu packages gcc)
-  #:use-module (gnu packages julia-jll))
+  #:use-module (gnu packages julia-jll)
+  #:use-module (gnu packages python)
+  #:use-module (gnu packages python-xyz))
 
 (define-public julia-abstractffts
   (package
@@ -3038,6 +3040,81 @@ everything from run time algorithm choice to code generation at compile time.")
 human-readable format.")
     (license license:expat)))
 
+(define-public julia-pycall
+  (package
+    (name "julia-pycall")
+    (version "1.92.3")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaPy/PyCall.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32
+          "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:imported-modules ((guix build python-build-system)
+                           ,@%julia-build-system-modules)
+       #:modules ((guix build julia-build-system)
+                  (guix build utils)
+                  ((guix build python-build-system) #:prefix python:))
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'remove-conda
+           (lambda _
+             (substitute* "Project.toml"
+               ((".*Conda.*") ""))
+             (substitute* (list "src/PyCall.jl"
+                                "test/runtests.jl")
+               (("import Conda") ""))
+             (substitute* "deps/depsutils.jl"
+               (("Conda.PYTHONDIR") "\"/\""))
+             #t))
+         (add-after 'unpack 'set-python
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((python (assoc-ref inputs "python")))
+               (setenv "PYCALL_JL_RUNTIME_PYTHON"
+                       (string-append python "/bin/python3"))
+               (with-output-to-file "deps/deps.jl"
+                 (lambda _
+                   (format #t
+                           "const python = \"~a/bin/python3\"~@
+                           const pyprogramname = \"~a/bin/python3\"~@
+                           const libpython = \"~a/lib/libpython~a.so.1.0\"~@
+                           const PYTHONHOME = \"~a\"~@
+                           const pyversion_build = v\"~a\"~@
+                           const conda = false~%"
+                           python
+                           python
+                           python
+                           (python:python-version python)
+                           python
+                           ,(package-version python))))
+               #t)))
+         (add-before 'check 'pre-check
+           (lambda _
+             (setenv "CI" "true")
+             (setenv "JULIA_PKGEVAL" "true")
+             #t)))))
+    (propagated-inputs
+     `(("julia-macrotools" ,julia-macrotools)
+       ("julia-versionparsing" ,julia-versionparsing)))
+    (inputs
+     `(("python" ,python)))
+    (native-inputs
+     `(("python-numpy" ,python-numpy)))
+    (home-page "https://github.com/JuliaPy/PyCall.jl")
+    (synopsis "Call Python functions from the Julia language")
+    (description "This package provides the ability to directly call and fully
+interoperate with Python from the Julia language.  You can import arbitrary
+Python modules from Julia, call Python functions (with automatic conversion of
+types between Julia and Python), define Python classes from Julia methods, and
+share large data structures between Julia and Python without copying them.")
+    (license license:expat)))
+
 (define-public julia-quadgk
   (package
     (name "julia-quadgk")
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-pycall): New variable.
> ---
>  gnu/packages/julia-xyz.scm | 79 +++++++++++++++++++++++++++++++++++++-
>  1 file changed, 78 insertions(+), 1 deletion(-)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 3616ffd006..1038d3f80b 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -26,7 +26,9 @@
>    #:use-module (guix git-download)
>    #:use-module (guix build-system julia)
>    #:use-module (gnu packages gcc)
> -  #:use-module (gnu packages julia-jll))
> +  #:use-module (gnu packages julia-jll)
> +  #:use-module (gnu packages python)
> +  #:use-module (gnu packages python-xyz))
>
>  (define-public julia-abstractffts
>    (package
> @@ -3038,6 +3040,81 @@ everything from run time algorithm choice to code generation at compile time.")
>  human-readable format.")
>      (license license:expat)))
>
> +(define-public julia-pycall
> +  (package
> +    (name "julia-pycall")
> +    (version "1.92.3")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaPy/PyCall.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32
> +          "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq"))))
> +    (build-system julia-build-system)
> +    (arguments
> +     `(#:imported-modules ((guix build python-build-system)
> +                           ,@%julia-build-system-modules)
> +       #:modules ((guix build julia-build-system)
> +                  (guix build utils)
> +                  ((guix build python-build-system) #:prefix python:))
> +       #:phases
> +       (modify-phases %standard-phases
> +         (add-after 'unpack 'remove-conda
> +           (lambda _
> +             (substitute* "Project.toml"
> +               ((".*Conda.*") ""))
> +             (substitute* (list "src/PyCall.jl"
> +                                "test/runtests.jl")
> +               (("import Conda") ""))
> +             (substitute* "deps/depsutils.jl"
> +               (("Conda.PYTHONDIR") "\"/\""))
> +             #t))
> +         (add-after 'unpack 'set-python
> +           (lambda* (#:key inputs outputs #:allow-other-keys)
> +             (let ((python (assoc-ref inputs "python")))
> +               (setenv "PYCALL_JL_RUNTIME_PYTHON"
> +                       (string-append python "/bin/python3"))
> +               (with-output-to-file "deps/deps.jl"
> +                 (lambda _
> +                   (format #t
> +                           "const python = \"~a/bin/python3\"~@
> +                           const pyprogramname = \"~a/bin/python3\"~@
> +                           const libpython = \"~a/lib/libpython~a.so.1.0\"~@
> +                           const PYTHONHOME = \"~a\"~@
> +                           const pyversion_build = v\"~a\"~@
> +                           const conda = false~%"
> +                           python
> +                           python
> +                           python
> +                           (python:python-version python)
> +                           python
> +                           ,(package-version python))))
> +               #t)))
> +         (add-before 'check 'pre-check
> +           (lambda _
> +             (setenv "CI" "true")
> +             (setenv "JULIA_PKGEVAL" "true")
> +             #t)))))
> +    (propagated-inputs
> +     `(("julia-macrotools" ,julia-macrotools)
> +       ("julia-versionparsing" ,julia-versionparsing)))
> +    (inputs
> +     `(("python" ,python)))
> +    (native-inputs
> +     `(("python-numpy" ,python-numpy)))
> +    (home-page "https://github.com/JuliaPy/PyCall.jl")
> +    (synopsis "Call Python functions from the Julia language")
> +    (description "This package provides the ability to directly call and fully
> +interoperate with Python from the Julia language.  You can import arbitrary
> +Python modules from Julia, call Python functions (with automatic conversion of
> +types between Julia and Python), define Python classes from Julia methods, and
> +share large data structures between Julia and Python without copying them.")
> +    (license license:expat)))


LGTM!


Cheers,
simon

[bug#50490] [PATCH 5/5] gnu: Add julia-ansicoloredprinters.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
---
 gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 1038d3f80b..ec31d70531 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -100,6 +100,26 @@ acts like @code{convert(T, x)}, but without the restriction of returning a
 be GPU compatible without throwing away the wrapper.")
     (license license:expat)))
 
+(define-public julia-ansicoloredprinters
+  (package
+    (name "julia-ansicoloredprinters")
+    (version "0.0.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+    (synopsis "ANSI escape code translator")
+    (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
+ANSI escape codes to another format.")
+    (license license:expat)))
+
 (define-public julia-aqua
   (package
     (name "julia-aqua")
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
> ---
>  gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
>  1 file changed, 20 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 1038d3f80b..ec31d70531 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -100,6 +100,26 @@ acts like @code{convert(T, x)}, but without the restriction of returning a
>  be GPU compatible without throwing away the wrapper.")
>      (license license:expat)))
>
> +(define-public julia-ansicoloredprinters
> +  (package
> +    (name "julia-ansicoloredprinters")
> +    (version "0.0.1")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
> +    (build-system julia-build-system)
> +    (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
> +    (synopsis "ANSI escape code translator")
> +    (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
> +ANSI escape codes to another format.")
> +    (license license:expat)))

LGTM!

Cheers,
simon

bug#50490: Acknowledgement ([PATCH 0/5] Some julia packages)

[Efraim Flashner]

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Patches pushed.

-- 
Efraim Flashner   <efraim@flashner.co.il>   רנשלפ םירפא
GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
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[bug#50582] [PATCH 0/4] Julia-documenter

[Efraim Flashner]

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Julia-documenter is a bit hard because there's a lot of javascript
packages which it expects to download at runtime.

The julia-documenter patch adds 4 packages in one go, julia-documenter
depends on two of them, and those two depend on julia-documenter. I was
able to use an older version of julia-documenter to bootstrap the
process, but it doesn't make a nice chain to apply that one separately.

Efraim Flashner (4):
  gnu: Add julia-libsass-jll.
  gnu: Add julia-sass.
  gnu: Add julia-ansicoloredprinters.
  gnu: Add julia-documenter.

 gnu/packages/julia-jll.scm |  43 +++++++++
 gnu/packages/julia-xyz.scm | 188 ++++++++++++++++++++++++++++++++++++-
 2 files changed, 230 insertions(+), 1 deletion(-)


base-commit: e4f8bfb3488cca0593327a983a368acceae6b352
-- 
2.33.0


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[bug#50582] [PATCH 1/4] gnu: Add julia-libsass-jll.

[Efraim Flashner]

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* gnu/packages/julia-jll.scm (julia-libsass-jll): New variable.
---
 gnu/packages/julia-jll.scm | 43 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

diff --git a/gnu/packages/julia-jll.scm b/gnu/packages/julia-jll.scm
index d18971ad48..d3677d0a33 100644
--- a/gnu/packages/julia-jll.scm
+++ b/gnu/packages/julia-jll.scm
@@ -1064,6 +1064,49 @@ (define-public julia-libpng-jll
     (description "This package provides a wrapper for the libpng library.")
     (license license:expat)))
 
+(define-public julia-libsass-jll
+  (let ((commit "69bf10603aad0ebf1f6df088c5fd7c4a5d1eb0ca"))
+    (package
+      (name "julia-libsass-jll")
+      (version "3.5.5+0")                 ;tag not created upstream
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/JuliaBinaryWrappers/libsass_jll.jl")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1fb6rf422533bsmfslvc20ag1hr50bf9xaj32rvh7nv593sbiygn"))))
+      (build-system julia-build-system)
+      (arguments
+       `(#:tests? #f                      ; no runtests.jl
+         #:phases
+         (modify-phases %standard-phases
+           (add-after 'unpack 'override-binary-path
+             (lambda* (#:key inputs #:allow-other-keys)
+               (map
+                (lambda (wrapper)
+                  (substitute* wrapper
+                    (("generate_wrapper_header.*")
+                     (string-append
+                      "generate_wrapper_header(\"libsass\", \""
+                      (assoc-ref inputs "libsass") "\")\n"))))
+                ;; There's a Julia file for each platform, override them all
+                (find-files "src/wrappers/" "\\.jl$"))
+               #t)))))
+      (inputs
+       `(("libsass" ,libsass)))
+      (propagated-inputs
+       `(("julia-jllwrappers" ,julia-jllwrappers)))
+      (home-page "https://github.com/JuliaBinaryWrappers/libsass_jll.jl")
+      (synopsis "Julia wrapper for libsass")
+      (description "This package provides a wrapper for libsass.  It is an
+autogenerated source package constructed using @code{BinaryBuilder.jl}.  The
+originating @code{build_tarballs.jl} script can be found on the community
+build tree Yggdrasil.")
+      (license license:expat))))
+
 (define-public julia-libtiff-jll
   (package
     (name "julia-libtiff-jll")
-- 
2.33.0


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[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-jll.scm (julia-libsass-jll): New variable.
> ---
>  gnu/packages/julia-jll.scm | 43 ++++++++++++++++++++++++++++++++++++++
>  1 file changed, 43 insertions(+)

LGTM!

Cheers,
simon

[bug#50582] [PATCH 2/4] gnu: Add julia-sass.

[Efraim Flashner]

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* gnu/packages/julia-xyz.scm (julia-sass): New variable.
---
 gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index a80964c2b0..2f953a33b7 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3403,6 +3403,28 @@ (define-public julia-safetestsets
 a loadable module.")
       (license license:expat))))
 
+(define-public julia-sass
+  (package
+    (name "julia-sass")
+    (version "0.2.0")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/piever/Sass.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-libsass-jll" ,julia-libsass-jll)))
+    (home-page "https://github.com/piever/Sass.jl")
+    (synopsis "Compile scss and sass file to css in Julia")
+    (description "This library provides a simple Julian API to use the
+@code{libsass} library to compile scss and sass files to css.")
+    (license license:expat)))
+
 (define-public julia-scratch
   (package
     (name "julia-scratch")
-- 
2.33.0


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[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-sass): New variable.
> ---
>  gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
>  1 file changed, 22 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index a80964c2b0..2f953a33b7 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -3403,6 +3403,28 @@ (define-public julia-safetestsets
>  a loadable module.")
>        (license license:expat))))
>
> +(define-public julia-sass
> +  (package
> +    (name "julia-sass")
> +    (version "0.2.0")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/piever/Sass.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
> +    (build-system julia-build-system)
> +    (propagated-inputs
> +     `(("julia-libsass-jll" ,julia-libsass-jll)))
> +    (home-page "https://github.com/piever/Sass.jl")
> +    (synopsis "Compile scss and sass file to css in Julia")

Again, I would remove «in Julia>..

> +    (description "This library provides a simple Julian API to use
> the

I would write «This package provides…»

> +@code{libsass} library to compile scss and sass files to css.")
> +    (license license:expat)))

LGTM.

Cheers,
simon

[bug#50490] [PATCH 3/4] gnu: Add julia-ansicoloredprinters.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
---
 gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 2f953a33b7..309687019d 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -98,6 +98,26 @@ (define-public julia-adapt
 be GPU compatible without throwing away the wrapper.")
     (license license:expat)))
 
+(define-public julia-ansicoloredprinters
+  (package
+    (name "julia-ansicoloredprinters")
+    (version "0.0.1")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+    (synopsis "ANSI escape code translator")
+    (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
+ANSI escape codes to another format.")
+    (license license:expat)))
+
 (define-public julia-aqua
   (package
     (name "julia-aqua")
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim@flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
> ---
>  gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
>  1 file changed, 20 insertions(+)

Already added by previous patch.  This one should be dropped.

Cheers,
simon

[bug#50490] [PATCH 4/4] gnu: Add julia-documenter.

[Efraim Flashner]

* gnu/packages/julia-xyz.scm (julia-documenter,
julia-documentermarkdown, julia-documentertools): New variables.
(julia-documenter-0.22): New hidden variable.
---
 gnu/packages/julia-xyz.scm | 146 ++++++++++++++++++++++++++++++++++++-
 1 file changed, 145 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 309687019d..e7e7680cca 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -26,7 +26,9 @@ (define-module (gnu packages julia-xyz)
   #:use-module (guix git-download)
   #:use-module (guix build-system julia)
   #:use-module (gnu packages gcc)
-  #:use-module (gnu packages julia-jll))
+  #:use-module (gnu packages julia-jll)
+  #:use-module (gnu packages python)
+  #:use-module (gnu packages version-control))
 
 (define-public julia-abstractffts
   (package
@@ -990,6 +992,148 @@ (define-public julia-docstringextensions
 valuable enough at this time.")
     (license license:expat)))
 
+;; By removing all the javascript and css downloads any HTML documentation
+;; produced by this package will not be very useful.
+(define-public julia-documenter
+  (package
+    (name "julia-documenter")
+    (version "0.27.6")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/Documenter.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1y6rql7cxc7hfhc8rfq1mdmffp70sqzyh4vnnq93fziwrc8c8sbj"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-source
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "src/Deps.jl"
+               (("pip install")
+                (string-append (assoc-ref inputs "python")
+                               "/bin/pip install")))
+             #t))
+         (add-after 'unpack 'remove-javascript-downloads
+           (lambda _
+             (substitute* "src/Writers/HTMLWriter.jl"
+               (("cdnjs.cloudflare.com") "example.com"))
+             ;; Removing the javascript downloads causes these tests fail.
+             (substitute* "test/examples/tests.jl"
+               ((".*Main\\.examples_html_doc.*") "")
+               ((".*Main\\.examples_html_mathjax3_doc.*") ""))
+             #t)))))
+    (propagated-inputs
+     `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
+       ("julia-docstringextensions" ,julia-docstringextensions)
+       ("julia-iocapture" ,julia-iocapture)
+       ("julia-json" ,julia-json)))
+    (inputs
+     `(("python" ,python-wrapper)))
+    (native-inputs
+     `(("git" ,git-minimal)
+       ("julia-documentermarkdown" ,julia-documentermarkdown)
+       ("julia-documentertools" ,julia-documentertools)))
+    (home-page "https://juliadocs.github.io/Documenter.jl")
+    (synopsis "Documentation generator for Julia")
+    (description "This package provides a documentation generator for Julia.")
+    (license license:expat)))
+
+(define-public julia-documenter-0.22
+  (package
+    (inherit julia-documenter)
+    (name "julia-documenter")
+    (version "0.22.6")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/Documenter.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32
+          "1z8b7267y7yn5nx8sjwkmc0ph97vmv42q52jg7s89ghqb9xx3wv5"))))
+    (arguments
+     `(#:tests? #f      ; Some tests require network.
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'remove-javascript-downloads
+           (lambda _
+             ;; This isn't problematic because we only use
+             ;; this package for bootstrapping.
+             (substitute* '("assets/html/documenter.js"
+                            "assets/html/search.js"
+                            "src/Writers/HTMLWriter.jl")
+               (("cdnjs.cloudflare.com") "example.com"))
+             #t)))))
+    (propagated-inputs
+     `(("julia-docstringextensions" ,julia-docstringextensions)
+       ("julia-json" ,julia-json)))
+    (inputs `())
+    (native-inputs `())
+    (properties '((hidden? . #t)))))
+
+(define-public julia-documentermarkdown
+  (package
+    (name "julia-documentermarkdown")
+    (version "0.2.2")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
+    (build-system julia-build-system)
+    (inputs
+     ;; We don't want to propagate the bootstrap version.
+     ;; Cycle with Documenter.jl in later versions.
+     `(("julia-documenter" ,julia-documenter-0.22)))
+    (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
+    (synopsis "Documenter's Markdown")
+    (description "This package enables the Markdown / MkDocs backend of
+@code{Documenter.jl}.")
+    (license license:expat)))
+
+(define-public julia-documentertools
+  (package
+    (name "julia-documentertools")
+    (version "0.1.13")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaDocs/DocumenterTools.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:tests? #f))    ; Tests require network.
+    (inputs
+     ;; We don't want to propagate the bootstrap version.
+     ;; Cycle with Documenter.jl in later versions.
+     `(("julia-documenter" ,julia-documenter-0.22)))
+    (propagated-inputs
+     `(("julia-docstringextensions" ,julia-docstringextensions)
+       ("julia-gumbo" ,julia-gumbo)
+       ("julia-sass" ,julia-sass)))
+    (native-inputs
+     `(("julia-example" ,julia-example)))
+    (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
+    (synopsis "Extra tools for setting up Documenter")
+    (description "This package contains utilities for setting up documentation
+generation with @code{Documenter.jl}.")
+    (license license:expat)))
+
 (define-public julia-diffresults
   (package
     (name "julia-diffresults")
-- 
2.33.0

[bug#50490] [PATCH 0/5] Some julia packages

[zimoun]

Hi Efraim,

On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim@flashner.co.il> wrote:

I would add here an explanation, along these lines: «These four
variables are added by the same commit to avoid a cyclic dependency.»

> * gnu/packages/julia-xyz.scm (julia-documenter,
> julia-documentermarkdown, julia-documentertools): New variables.
> (julia-documenter-0.22): New hidden variable.
> ---
>  gnu/packages/julia-xyz.scm | 146 ++++++++++++++++++++++++++++++++++++-
>  1 file changed, 145 insertions(+), 1 deletion(-)

The patch does not apply…

> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 309687019d..e7e7680cca 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -26,7 +26,9 @@ (define-module (gnu packages julia-xyz)
>    #:use-module (guix git-download)
>    #:use-module (guix build-system julia)
>    #:use-module (gnu packages gcc)
> -  #:use-module (gnu packages julia-jll))
> +  #:use-module (gnu packages julia-jll)
> +  #:use-module (gnu packages python)
> +  #:use-module (gnu packages version-control))
>
>  (define-public julia-abstractffts
>    (package
> @@ -990,6 +992,148 @@ (define-public julia-docstringextensions
>  valuable enough at this time.")
>      (license license:expat)))
>
> +;; By removing all the javascript and css downloads any HTML documentation
> +;; produced by this package will not be very useful.
> +(define-public julia-documenter
> +  (package
> +    (name "julia-documenter")
> +    (version "0.27.6")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaDocs/Documenter.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "1y6rql7cxc7hfhc8rfq1mdmffp70sqzyh4vnnq93fziwrc8c8sbj"))))
> +    (build-system julia-build-system)
> +    (arguments
> +     `(#:phases
> +       (modify-phases %standard-phases
> +         (add-after 'unpack 'patch-source
> +           (lambda* (#:key inputs #:allow-other-keys)
> +             (substitute* "src/Deps.jl"
> +               (("pip install")
> +                (string-append (assoc-ref inputs "python")
> +                               "/bin/pip install")))
> +             #t))
> +         (add-after 'unpack 'remove-javascript-downloads
> +           (lambda _
> +             (substitute* "src/Writers/HTMLWriter.jl"
> +               (("cdnjs.cloudflare.com") "example.com"))
> +             ;; Removing the javascript downloads causes these tests fail.
> +             (substitute* "test/examples/tests.jl"
> +               ((".*Main\\.examples_html_doc.*") "")
> +               ((".*Main\\.examples_html_mathjax3_doc.*") ""))
> +             #t)))))
> +    (propagated-inputs
> +     `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
> +       ("julia-docstringextensions" ,julia-docstringextensions)
> +       ("julia-iocapture" ,julia-iocapture)
> +       ("julia-json" ,julia-json)))
> +    (inputs
> +     `(("python" ,python-wrapper)))
> +    (native-inputs
> +     `(("git" ,git-minimal)
> +       ("julia-documentermarkdown" ,julia-documentermarkdown)
> +       ("julia-documentertools" ,julia-documentertools)))
> +    (home-page "https://juliadocs.github.io/Documenter.jl")
> +    (synopsis "Documentation generator for Julia")
> +    (description "This package provides a documentation generator for Julia.")
> +    (license license:expat)))
> +
> +(define-public julia-documenter-0.22

Do we need to make it public?  Is it not enough to keep it hidden?

> +  (package
> +    (inherit julia-documenter)
> +    (name "julia-documenter")
> +    (version "0.22.6")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaDocs/Documenter.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32
> +          "1z8b7267y7yn5nx8sjwkmc0ph97vmv42q52jg7s89ghqb9xx3wv5"))))
> +    (arguments
> +     `(#:tests? #f      ; Some tests require network.
> +       #:phases
> +       (modify-phases %standard-phases
> +         (add-after 'unpack 'remove-javascript-downloads
> +           (lambda _
> +             ;; This isn't problematic because we only use
> +             ;; this package for bootstrapping.
> +             (substitute* '("assets/html/documenter.js"
> +                            "assets/html/search.js"
> +                            "src/Writers/HTMLWriter.jl")
> +               (("cdnjs.cloudflare.com") "example.com"))
> +             #t)))))
> +    (propagated-inputs
> +     `(("julia-docstringextensions" ,julia-docstringextensions)
> +       ("julia-json" ,julia-json)))
> +    (inputs `())
> +    (native-inputs `())
> +    (properties '((hidden? . #t)))))
> +
> +(define-public julia-documentermarkdown
> +  (package
> +    (name "julia-documentermarkdown")
> +    (version "0.2.2")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
> +    (build-system julia-build-system)
> +    (inputs
> +     ;; We don't want to propagate the bootstrap version.
> +     ;; Cycle with Documenter.jl in later versions.
> +     `(("julia-documenter" ,julia-documenter-0.22)))
> +    (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> +    (synopsis "Documenter's Markdown")
> +    (description "This package enables the Markdown / MkDocs backend of
> +@code{Documenter.jl}.")
> +    (license license:expat)))
> +
> +(define-public julia-documentertools
> +  (package
> +    (name "julia-documentertools")
> +    (version "0.1.13")
> +    (source
> +      (origin
> +        (method git-fetch)
> +        (uri (git-reference
> +               (url "https://github.com/JuliaDocs/DocumenterTools.jl")
> +               (commit (string-append "v" version))))
> +        (file-name (git-file-name name version))
> +        (sha256
> +         (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
> +    (build-system julia-build-system)
> +    (arguments
> +     `(#:tests? #f))    ; Tests require network.
> +    (inputs
> +     ;; We don't want to propagate the bootstrap version.
> +     ;; Cycle with Documenter.jl in later versions.
> +     `(("julia-documenter" ,julia-documenter-0.22)))
> +    (propagated-inputs
> +     `(("julia-docstringextensions" ,julia-docstringextensions)
> +       ("julia-gumbo" ,julia-gumbo)
> +       ("julia-sass" ,julia-sass)))
> +    (native-inputs
> +     `(("julia-example" ,julia-example)))
> +    (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
> +    (synopsis "Extra tools for setting up Documenter")

I would write «setting up Documenter.jl»

> +    (description "This package contains utilities for setting up documentation
> +generation with @code{Documenter.jl}.")
> +    (license license:expat)))
> +
>  (define-public julia-diffresults
>    (package
>      (name "julia-diffresults")

…so I have not tried it.  It LGTM though.

Cheers,
simon

[bug#50490] [PATCH 0/5] Some julia packages

[Efraim Flashner]

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On Mon, Sep 27, 2021 at 07:11:18PM +0200, zimoun wrote:
> Hi Efraim,
> 
> On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim@flashner.co.il> wrote:
> 
> I would add here an explanation, along these lines: «These four
> variables are added by the same commit to avoid a cyclic dependency.»
> 
> > * gnu/packages/julia-xyz.scm (julia-documenter,
> > julia-documentermarkdown, julia-documentertools): New variables.
> > (julia-documenter-0.22): New hidden variable.
> > ---
> >  gnu/packages/julia-xyz.scm | 146 ++++++++++++++++++++++++++++++++++++-
> >  1 file changed, 145 insertions(+), 1 deletion(-)
> 
> The patch does not apply…
Probably due to the module imports. python-xyz was added in a different
patch.
> 
> > diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> > index 309687019d..e7e7680cca 100644
> > --- a/gnu/packages/julia-xyz.scm
> > +++ b/gnu/packages/julia-xyz.scm
> > @@ -26,7 +26,9 @@ (define-module (gnu packages julia-xyz)
> >    #:use-module (guix git-download)
> >    #:use-module (guix build-system julia)
> >    #:use-module (gnu packages gcc)
> > -  #:use-module (gnu packages julia-jll))
> > +  #:use-module (gnu packages julia-jll)
> > +  #:use-module (gnu packages python)
> > +  #:use-module (gnu packages version-control))
> >
> >  (define-public julia-abstractffts
> >    (package
> > @@ -990,6 +992,148 @@ (define-public julia-docstringextensions
> >  valuable enough at this time.")
> >      (license license:expat)))
> >
> > +;; By removing all the javascript and css downloads any HTML documentation
> > +;; produced by this package will not be very useful.
> > +(define-public julia-documenter
> > +  (package
> > +    (name "julia-documenter")
> > +    (version "0.27.6")
> > +    (source
> > +      (origin
> > +        (method git-fetch)
> > +        (uri (git-reference
> > +               (url "https://github.com/JuliaDocs/Documenter.jl")
> > +               (commit (string-append "v" version))))
> > +        (file-name (git-file-name name version))
> > +        (sha256
> > +         (base32 "1y6rql7cxc7hfhc8rfq1mdmffp70sqzyh4vnnq93fziwrc8c8sbj"))))
> > +    (build-system julia-build-system)
> > +    (arguments
> > +     `(#:phases
> > +       (modify-phases %standard-phases
> > +         (add-after 'unpack 'patch-source
> > +           (lambda* (#:key inputs #:allow-other-keys)
> > +             (substitute* "src/Deps.jl"
> > +               (("pip install")
> > +                (string-append (assoc-ref inputs "python")
> > +                               "/bin/pip install")))
> > +             #t))
> > +         (add-after 'unpack 'remove-javascript-downloads
> > +           (lambda _
> > +             (substitute* "src/Writers/HTMLWriter.jl"
> > +               (("cdnjs.cloudflare.com") "example.com"))
> > +             ;; Removing the javascript downloads causes these tests fail.
> > +             (substitute* "test/examples/tests.jl"
> > +               ((".*Main\\.examples_html_doc.*") "")
> > +               ((".*Main\\.examples_html_mathjax3_doc.*") ""))
> > +             #t)))))
> > +    (propagated-inputs
> > +     `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
> > +       ("julia-docstringextensions" ,julia-docstringextensions)
> > +       ("julia-iocapture" ,julia-iocapture)
> > +       ("julia-json" ,julia-json)))
> > +    (inputs
> > +     `(("python" ,python-wrapper)))
> > +    (native-inputs
> > +     `(("git" ,git-minimal)
> > +       ("julia-documentermarkdown" ,julia-documentermarkdown)
> > +       ("julia-documentertools" ,julia-documentertools)))
> > +    (home-page "https://juliadocs.github.io/Documenter.jl")
> > +    (synopsis "Documentation generator for Julia")
> > +    (description "This package provides a documentation generator for Julia.")
> > +    (license license:expat)))
> > +
> > +(define-public julia-documenter-0.22
> 
> Do we need to make it public?  Is it not enough to keep it hidden?
It should be enough to not make it hidden and not public. Also, I took
another look at it and adjusted the package slightly so it can use the
current julia-documenter version and not an older version for the
bootstrap.
> 
> > +  (package
> > +    (inherit julia-documenter)
> > +    (name "julia-documenter")
> > +    (version "0.22.6")
> > +    (source
> > +      (origin
> > +        (method git-fetch)
> > +        (uri (git-reference
> > +               (url "https://github.com/JuliaDocs/Documenter.jl")
> > +               (commit (string-append "v" version))))
> > +        (file-name (git-file-name name version))
> > +        (sha256
> > +         (base32
> > +          "1z8b7267y7yn5nx8sjwkmc0ph97vmv42q52jg7s89ghqb9xx3wv5"))))
> > +    (arguments
> > +     `(#:tests? #f      ; Some tests require network.
> > +       #:phases
> > +       (modify-phases %standard-phases
> > +         (add-after 'unpack 'remove-javascript-downloads
> > +           (lambda _
> > +             ;; This isn't problematic because we only use
> > +             ;; this package for bootstrapping.
> > +             (substitute* '("assets/html/documenter.js"
> > +                            "assets/html/search.js"
> > +                            "src/Writers/HTMLWriter.jl")
> > +               (("cdnjs.cloudflare.com") "example.com"))
> > +             #t)))))
> > +    (propagated-inputs
> > +     `(("julia-docstringextensions" ,julia-docstringextensions)
> > +       ("julia-json" ,julia-json)))
> > +    (inputs `())
> > +    (native-inputs `())
> > +    (properties '((hidden? . #t)))))
> > +
> > +(define-public julia-documentermarkdown
> > +  (package
> > +    (name "julia-documentermarkdown")
> > +    (version "0.2.2")
> > +    (source
> > +      (origin
> > +        (method git-fetch)
> > +        (uri (git-reference
> > +               (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> > +               (commit (string-append "v" version))))
> > +        (file-name (git-file-name name version))
> > +        (sha256
> > +         (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
> > +    (build-system julia-build-system)
> > +    (inputs
> > +     ;; We don't want to propagate the bootstrap version.
> > +     ;; Cycle with Documenter.jl in later versions.
> > +     `(("julia-documenter" ,julia-documenter-0.22)))
> > +    (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> > +    (synopsis "Documenter's Markdown")
> > +    (description "This package enables the Markdown / MkDocs backend of
> > +@code{Documenter.jl}.")
> > +    (license license:expat)))
> > +
> > +(define-public julia-documentertools
> > +  (package
> > +    (name "julia-documentertools")
> > +    (version "0.1.13")
> > +    (source
> > +      (origin
> > +        (method git-fetch)
> > +        (uri (git-reference
> > +               (url "https://github.com/JuliaDocs/DocumenterTools.jl")
> > +               (commit (string-append "v" version))))
> > +        (file-name (git-file-name name version))
> > +        (sha256
> > +         (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
> > +    (build-system julia-build-system)
> > +    (arguments
> > +     `(#:tests? #f))    ; Tests require network.
> > +    (inputs
> > +     ;; We don't want to propagate the bootstrap version.
> > +     ;; Cycle with Documenter.jl in later versions.
> > +     `(("julia-documenter" ,julia-documenter-0.22)))
> > +    (propagated-inputs
> > +     `(("julia-docstringextensions" ,julia-docstringextensions)
> > +       ("julia-gumbo" ,julia-gumbo)
> > +       ("julia-sass" ,julia-sass)))
> > +    (native-inputs
> > +     `(("julia-example" ,julia-example)))
> > +    (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
> > +    (synopsis "Extra tools for setting up Documenter")
> 
> I would write «setting up Documenter.jl»
> 
> > +    (description "This package contains utilities for setting up documentation
> > +generation with @code{Documenter.jl}.")
> > +    (license license:expat)))
> > +
> >  (define-public julia-diffresults
> >    (package
> >      (name "julia-diffresults")
> 
> …so I have not tried it.  It LGTM though.
> 
> Cheers,
> simon

-- 
Efraim Flashner   <efraim@flashner.co.il>   רנשלפ םירפא
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