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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 12 Oct 2023 12:48:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 66493 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 66493@debbugs.gnu.org Cc: Navid Afkhami X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.16971148563532 (code B ref -1); Thu, 12 Oct 2023 12:48:01 +0000 Received: (at submit) by debbugs.gnu.org; 12 Oct 2023 12:47:36 +0000 Received: from localhost ([127.0.0.1]:41323 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qqv6D-0000ug-E0 for submit@debbugs.gnu.org; Thu, 12 Oct 2023 08:47:35 -0400 Received: from lists.gnu.org ([2001:470:142::17]:47726) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qqv67-0000tp-F8 for submit@debbugs.gnu.org; Thu, 12 Oct 2023 08:47:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qqv5Y-0000zk-Sb for guix-patches@gnu.org; Thu, 12 Oct 2023 08:46:56 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qqv5U-0000ax-TN for guix-patches@gnu.org; Thu, 12 Oct 2023 08:46:52 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697114787; x=1698929188; bh=mLGb/AMSliQsp0h p5kTM3rnWbPpyqVW4okDDBD/aYkI=; b=LoRIx/0KvT3iy2zGyvRboLJwja4O/v/ Xkh+e7ric6lXN27jBB+JmkMWDNTEG69tDI45IU1CPyi1XlDkPSRZpTxF5SupqWZz fOgY4XFiLB/5FMiR5B8+4IRUKnDP6Z0/BjOTO6drLyqPVK1KwSyssW2FLXMn5B7O pL/TCNMDsGzo= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 6B6E2A019E for ; Thu, 12 Oct 2023 14:46:27 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Thu, 12 Oct 2023 14:46:26 +0200 From: Navid Afkhami Date: Thu, 12 Oct 2023 12:46:24 +0000 Message-ID: <618fa9f5d775960fae19fa60956f2d0729c321ab.1697114784.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27930.007 X-TM-AS-Result: No-10--3.732400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcN6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIEJ1hMCC63pYqbs +nJ/tFJHm2EqktmKsyBq+GDzhZYNl0N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV+FR9 Hau8GO7nSz6XreSIan5pB4w287dkH5muhlF7H/x2ya/YjoswtTc9wesZTwXF52XvPRaAUCxYC9l rK/gfKT2TB0/Q0QfOR5swHZk3n/LUrpkcrf+nKxt0oQIuj+SVeFEVfQxs3N6ZDgmt8QekvB5maC eNv/LIzVGQdqwsDiEg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.732400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27930.007 X-TM-SNTS-SMTP: 4DD6DA2D2946CBA2923C092245FE8A6B76A6F15804356E9954B9D8154E1D88D22000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US X-Spam-Score: 3.90 X-Migadu-Queue-Id: 075C455E17 X-Migadu-Scanner: mx0.migadu.com X-Migadu-Spam-Score: 3.90 X-TUID: nFU26Be0K1r7 * gnu/packages/bioinformatics.scm (r-complexupset): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cb0bdf766e..bd936cd1e3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -810,6 +810,34 @@ (define-public r-codeandroll2 These functions are used by MarkdownReports, ggExpress, and SeuratUtils.") (license license:gpl3)))) +(define-public r-complexupset + (let ((commit "bb3f10a35eb2033754620aacdedc1d52357f13e4") + (revision "1")) + (package + (name "r-complexupset") + (version (git-version "1.3.5" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/krassowski/complex-upset") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1yid15515yhfzmbs8z991kk62hzdrlgbz6p81aj6csg3db0xy2xc")))) + (properties `((upstream-name . "ComplexUpset"))) + (build-system r-build-system) + (propagated-inputs (list r-colorspace r-ggplot2 r-patchwork r-scales)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/krassowski/complex-upset") + (synopsis "Create complex upset plots using 'ggplot2' components") + (description + "@code{UpSet} plots improve set overlap visualizations over Venn Diagrams. +Striving to bring the best of the @code{UpSetR} and ggplot2', this +package offers a way to create complex overlap visualisations, +using simple and familiar tools.") + (license license:expat)))) + (define-public r-conospanel (let ((commit "39e76b201a783b4e92fd615010a735a61746fbb9") (revision "1")) base-commit: 1328c4cca531318e3ed90c6aecb522a5b22a4bcc -- 2.34.1