* bug#22125: bless: non-deterministic failure on x86_64
@ 2015-12-09 15:33 Mark H Weaver
2015-12-10 9:27 ` Ludovic Courtès
` (2 more replies)
0 siblings, 3 replies; 5+ messages in thread
From: Mark H Weaver @ 2015-12-09 15:33 UTC (permalink / raw)
To: 22125
The following build of 'bless' on x86_64, the most recent at the time of
this writing, failed by timeout after 1 hour of silence:
http://hydra.gnu.org/build/864760#tabs-buildsteps
Here's the tail of the failed build log:
--8<---------------cut here---------------start------------->8---
starting phase `build'
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c kmc/kmc_api/kmc_file.cpp -o kmc/kmc_api/kmc_file.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c kmc/kmc_api/kmer_api.cpp -o kmc/kmc_api/kmer_api.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c kmc/kmc_api/mmer.cpp -o kmc/kmc_api/mmer.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c murmurhash3/MurmurHash3.cpp -o murmurhash3/MurmurHash3.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c check_inputs.cpp -o check_inputs.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c correct_errors.cpp -o correct_errors.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c count_solid_kmers.cpp -o count_solid_kmers.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c main.cpp -o main.o
mpicxx -Wall -O3 -I ./boost/include -I ./google-sparsehash -I ./zlib/install/include -I ./klib -I ./kmc/kmc_api -fopenmp -std=c++11 -c parse_args.cpp -o parse_args.o
mpicxx kmc/kmc_api/kmc_file.o kmc/kmc_api/kmer_api.o kmc/kmc_api/mmer.o murmurhash3/MurmurHash3.o check_inputs.o correct_errors.o count_solid_kmers.o main.o parse_args.o -o bless -lboost_filesystem -lboost_system -lboost_iostreams -lz -fopenmp -std=c++11
cd kmc; make CC=mpicxx
make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/tmp/nix-build-bless-1p02.drv-0/v1p02/kmc'
mpicxx -Wall -O3 -m64 -fopenmp -pthread -std=c++11 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o
building of `/gnu/store/iwp3cd4p94lvfgkhyvpyzrghfsrm8mvj-bless-1p02.drv' timed out after 3600 seconds of silence
@ build-failed /gnu/store/iwp3cd4p94lvfgkhyvpyzrghfsrm8mvj-bless-1p02.drv - timeout
guix build: error: build failed: build of `/gnu/store/iwp3cd4p94lvfgkhyvpyzrghfsrm8mvj-bless-1p02.drv' failed
--8<---------------cut here---------------end--------------->8---
Mark
^ permalink raw reply [flat|nested] 5+ messages in thread
* bug#22125: bless: non-deterministic failure on x86_64
2015-12-09 15:33 bug#22125: bless: non-deterministic failure on x86_64 Mark H Weaver
@ 2015-12-10 9:27 ` Ludovic Courtès
2017-03-28 17:42 ` bug#22125: bless: non deterministic failure Branson, Joshua A
2018-02-09 21:36 ` Andreas Enge
2 siblings, 0 replies; 5+ messages in thread
From: Ludovic Courtès @ 2015-12-10 9:27 UTC (permalink / raw)
To: Mark H Weaver; +Cc: 22125
Mark H Weaver <mhw@netris.org> skribis:
> mpicxx kmc/kmc_api/kmc_file.o kmc/kmc_api/kmer_api.o kmc/kmc_api/mmer.o murmurhash3/MurmurHash3.o check_inputs.o correct_errors.o count_solid_kmers.o main.o parse_args.o -o bless -lboost_filesystem -lboost_system -lboost_iostreams -lz -fopenmp -std=c++11
> cd kmc; make CC=mpicxx
> make[1]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
> make[1]: Entering directory '/tmp/nix-build-bless-1p02.drv-0/v1p02/kmc'
> mpicxx -Wall -O3 -m64 -fopenmp -pthread -std=c++11 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o
> building of `/gnu/store/iwp3cd4p94lvfgkhyvpyzrghfsrm8mvj-bless-1p02.drv' timed out after 3600 seconds of silence
Sounds like ‘make’ getting confused and waiting forever.
Possibly #:parallel-build? #f would help?
Ludo’.
^ permalink raw reply [flat|nested] 5+ messages in thread
* bug#22125: bless: non deterministic failure
2015-12-09 15:33 bug#22125: bless: non-deterministic failure on x86_64 Mark H Weaver
2015-12-10 9:27 ` Ludovic Courtès
@ 2017-03-28 17:42 ` Branson, Joshua A
2017-03-28 18:48 ` Leo Famulari
2018-02-09 21:36 ` Andreas Enge
2 siblings, 1 reply; 5+ messages in thread
From: Branson, Joshua A @ 2017-03-28 17:42 UTC (permalink / raw)
To: 22125@debbugs.gnu.org
It looks like bless is building fine. It had two recent failures (March 2017), but more recent correct builds.
http://hydra.gnu.org/job/gnu/core-updates/bless-1p02.x86_64-linux
I also see other builds of bless working just fine here:
http://hydra.gnu.org/job/gnu/master/bless-1p02.x86_64-linux
http://hydra.gnu.org/job/gnu/release-0.12.0/bless-1p02.x86_64-linux
Perhaps this is not a huge issue anymore?
Joshua
^ permalink raw reply [flat|nested] 5+ messages in thread
* bug#22125: bless: non deterministic failure
2017-03-28 17:42 ` bug#22125: bless: non deterministic failure Branson, Joshua A
@ 2017-03-28 18:48 ` Leo Famulari
0 siblings, 0 replies; 5+ messages in thread
From: Leo Famulari @ 2017-03-28 18:48 UTC (permalink / raw)
To: Branson, Joshua A; +Cc: 22125@debbugs.gnu.org
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On Tue, Mar 28, 2017 at 05:42:36PM +0000, Branson, Joshua A wrote:
> It looks like bless is building fine. It had two recent failures (March 2017), but more recent correct builds.
>
> http://hydra.gnu.org/job/gnu/core-updates/bless-1p02.x86_64-linux
>
> I also see other builds of bless working just fine here:
>
> http://hydra.gnu.org/job/gnu/master/bless-1p02.x86_64-linux
>
> http://hydra.gnu.org/job/gnu/release-0.12.0/bless-1p02.x86_64-linux
>
> Perhaps this is not a huge issue anymore?
It may be an issue but not a huge issue. It would be good to know what's
going on, though.
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^ permalink raw reply [flat|nested] 5+ messages in thread
* bug#22125: bless: non deterministic failure
2015-12-09 15:33 bug#22125: bless: non-deterministic failure on x86_64 Mark H Weaver
2015-12-10 9:27 ` Ludovic Courtès
2017-03-28 17:42 ` bug#22125: bless: non deterministic failure Branson, Joshua A
@ 2018-02-09 21:36 ` Andreas Enge
2 siblings, 0 replies; 5+ messages in thread
From: Andreas Enge @ 2018-02-09 21:36 UTC (permalink / raw)
To: 22125-done
Bless is still compiling well in 2018, closing this bug.
Andreas
^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2018-02-09 21:37 UTC | newest]
Thread overview: 5+ messages (download: mbox.gz follow: Atom feed
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2015-12-09 15:33 bug#22125: bless: non-deterministic failure on x86_64 Mark H Weaver
2015-12-10 9:27 ` Ludovic Courtès
2017-03-28 17:42 ` bug#22125: bless: non deterministic failure Branson, Joshua A
2017-03-28 18:48 ` Leo Famulari
2018-02-09 21:36 ` Andreas Enge
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