From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: [PATCH 17/22] gnu: Add bpp-popgen. Date: Wed, 27 Jul 2016 22:54:18 +1000 Message-ID: <5962fca5284ee25259c2bfb8d7d86768dff8867e.1469622379.git.donttrustben@gmail.com> References: <20160727125423.7768-1-donttrustben@gmail.com> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:55059) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bSON5-0000Ki-80 for guix-devel@gnu.org; Wed, 27 Jul 2016 08:55:36 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bSON3-0004g7-IT for guix-devel@gnu.org; Wed, 27 Jul 2016 08:55:34 -0400 Received: from mail-pf0-x241.google.com ([2607:f8b0:400e:c00::241]:34136) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bSON2-0004fE-R2 for guix-devel@gnu.org; Wed, 27 Jul 2016 08:55:33 -0400 Received: by mail-pf0-x241.google.com with SMTP id g202so1843295pfb.1 for ; Wed, 27 Jul 2016 05:55:32 -0700 (PDT) Received: from localhost.localdomain ([103.25.181.216]) by smtp.googlemail.com with ESMTPSA id o80sm9177941pfa.67.2016.07.27.05.55.28 for (version=TLS1_2 cipher=ECDHE-RSA-AES128-SHA bits=128/128); Wed, 27 Jul 2016 05:55:30 -0700 (PDT) In-Reply-To: <20160727125423.7768-1-donttrustben@gmail.com> In-Reply-To: References: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (bpp-popgen): New variable. --- gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 803dae9..5dfc637 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -540,6 +540,39 @@ analysis, phylogenetics, molecular evolution and population genetics. This library provides phylogenetics-related modules.") (license license:cecill-c)))) +(define-public bpp-popgen + ;; The last release was in 2014 and the recommended way to install from source + ;; is to clone the git repository, so we do this. + ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page + (let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f")) + (package + (name "bpp-popgen") + (version (string-append "2.2.0-1." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "http://biopp.univ-montp2.fr/git/bpp-popgen") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5")))) + (build-system cmake-build-system) + (arguments + `(#:parallel-build? #f + #:tests? #f)) ; There are no tests. + (inputs + `(("bpp-core" ,bpp-core) + ("bpp-seq" ,bpp-seq) + ("gcc" ,gcc-5))) + (home-page "http://biopp.univ-montp2.fr") + (synopsis "Bio++ population genetics library") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence +analysis, phylogenetics, molecular evolution and population genetics. This +library provides population genetics-related modules.") + (license license:cecill-c)))) + (define-public bpp-seq ;; The last release was in 2014 and the recommended way to install from source ;; is to clone the git repository, so we do this. -- 2.9.1