From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: Re: [PATCH] Add Ribotaper. Date: Sun, 10 Jul 2016 21:30:07 +1000 Message-ID: <578231BF.4000009@uq.edu.au> References: <20160707092629.23884-1-ricardo.wurmus@mdc-berlin.de> <577E59D2.3010107@uq.edu.au> <57802E95.1020305@uq.edu.au> <87mvlq38cv.fsf@elephly.net> Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:56579) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bMCwK-0005es-Ea for guix-devel@gnu.org; Sun, 10 Jul 2016 07:30:25 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bMCwG-0007Rw-AR for guix-devel@gnu.org; Sun, 10 Jul 2016 07:30:23 -0400 Received: from mailhub2.soe.uq.edu.au ([130.102.132.209]:37891 helo=newmailhub.uq.edu.au) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bMCwF-0007R4-NC for guix-devel@gnu.org; Sun, 10 Jul 2016 07:30:20 -0400 In-Reply-To: <87mvlq38cv.fsf@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ricardo Wurmus Cc: guix-devel@gnu.org On 10/07/16 05:43, Ricardo Wurmus wrote: > Ben Woodcroft writes: > > >> The patch LGTM otherwise, except that I would unpack 'ORF' and use the >> term 'ribo-seq' in the description. I've never looking at ribo-seq dat= a >> before and I'm not familiar, so I wasn't sure what 'ribosome profiling= ' >> meant exactly e.g. is it measuring the amount of ribosome in a cell? I >> realise that isn't true, just illustrating the point. Perhaps I am too >> naive. > I don=E2=80=99t know how to naturally include the term =E2=80=9Cribo-se= q=E2=80=9D, so how about > simply this: > > Ribotaper is a method for defining translated @dfn{open reading > frames} (ORFs) using ribosome profiling (ribo-seq) data. This > package provides the Ribotaper pipeline. > > Is this better? Thanks for indulging my naivety. Looks good. ben