A reasonably straightforward update.


Version 2.25.0 (3-Sept-2015)

 1. Added new -F option that allows one to set the minimum fraction of
    overlap required for the B interval. This complements the
    functionality of the -f option.Available for intersect, coverage,
    map, subtract, and jaccard.
 2. Added new -e option that allows one to require that the minimum
    fraction overlap is achieved in either A _OR_ B, not A _AND_ B which
    is the behavior of the -r option. Available for intersect, coverage,
    map, subtract, and jaccard.
 3. Fixed a longstanding bug that prevented genomecov from reporting
    chromosomes that lack a single interval.
 4. Modified a src directory called "aux" to "driver" to prevent
    compilation errors on Windows machines. Thanks very much to John
    Marshall.
 5. Fixed a regression that caused the coverage tool to complain if BED
    files had less than 5 columns.
 6. Fixed a variable overload bug that prevented compilation on Debian
    machines.
 7. Speedups to the groupby tool.
 8. New -delim option for the groupby tool.
 9. Fixed a bug in map that prevented strand-specifc overlaps from being
    reported when using certain BEDPLUS formats.
10. Prevented excessive memory usage when not using pre-sorted input.