From 1fe31024e6c78ab7bbdfe7be2c2ac8f4ec1db447 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrustben@gmail.com>
Date: Sat, 21 Nov 2015 10:37:34 +1000
Subject: [PATCH 3/3] gnu: orfm: Update to 0.4.4.

* gnu/packages/bioinformatics.scm (orfm): Update to 0.4.4.
[arguments]: Run intended tests.
[inputs]: Add inputs required for tests.
---
 gnu/packages/bioinformatics.scm | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 35cec1e..24a1992 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1878,7 +1878,7 @@ that a read originated from a particular isoform.")
 (define-public orfm
   (package
     (name "orfm")
-    (version "0.4.1")
+    (version "0.4.4")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1886,9 +1886,15 @@ that a read originated from a particular isoform.")
                     version "/orfm-" version ".tar.gz"))
               (sha256
                (base32
-                "05fmw145snk646ly076zby0fjav0k7ysbclck5d4s9pmgcfpijc2"))))
+                "1pwpy6qwkjjd4jyfln5c4c0009blgar0g7c5wkldbs9mzqrv77di"))))
     (build-system gnu-build-system)
+    (arguments
+     `(#:test-target "test"))
     (inputs `(("zlib" ,zlib)))
+    (native-inputs
+     `(("ruby-bio-commandeer" ,ruby-bio-commandeer)
+       ("ruby-rspec" ,ruby-rspec)
+       ("ruby" ,ruby)))
     (synopsis "Simple and not slow open reading frame (ORF) caller")
     (description
      "An ORF caller finds stretches of DNA that when translated are not
-- 
2.1.4