From: Ben Woodcroft <b.woodcroft@uq.edu.au>
To: "guix-devel@gnu.org" <guix-devel@gnu.org>
Subject: Update mafft to 7.245.
Date: Tue, 10 Nov 2015 22:18:10 +1000 [thread overview]
Message-ID: <5641E082.90801@uq.edu.au> (raw)
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Also had to fix the inputs. Hard not to notice these things in the
environment container - worked well thanks.
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From a540e28db46d7914e66f448ad49850f4365902cb Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrustben@gmail.com>
Date: Tue, 10 Nov 2015 22:10:39 +1000
Subject: [PATCH] gnu: mafft: Update to 7.245.
* gnu/packages/bioinformatics.scm (mafft): Update to 7.245.
Fix inputs.
---
gnu/packages/bioinformatics.scm | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f13e405..011ce78 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -40,6 +40,7 @@
#:use-module (gnu packages compression)
#:use-module (gnu packages cpio)
#:use-module (gnu packages file)
+ #:use-module (gnu packages gawk)
#:use-module (gnu packages java)
#:use-module (gnu packages linux)
#:use-module (gnu packages machine-learning)
@@ -1688,7 +1689,7 @@ sequencing tag position and orientation.")
(define-public mafft
(package
(name "mafft")
- (version "7.221")
+ (version "7.245")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1697,7 +1698,7 @@ sequencing tag position and orientation.")
(file-name (string-append name "-" version ".tgz"))
(sha256
(base32
- "0xi7klbsgi049vsrk6jiwh9wfj3b770gz3c8c7zwij448v0dr73d"))))
+ "0m1l7gdrmfxjw54d3a0g18w6rwqrra9w9zvxix7dcddw6d1qyir2"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no automated tests, though there are tests in the read me
@@ -1731,8 +1732,11 @@ sequencing tag position and orientation.")
\\$\\(DESTDIR\\)\\$\\(LIBDIR\\)") "#"))
#t))
(delete 'configure))))
- (inputs
- `(("perl" ,perl)))
+ (propagated-inputs
+ `(("perl" ,perl)
+ ("gawk" ,gawk)
+ ("coreutils" ,coreutils)
+ ("grep" ,grep)))
(home-page "http://mafft.cbrc.jp/alignment/software/")
(synopsis "Multiple sequence alignment program")
(description
--
2.4.3
next reply other threads:[~2015-11-10 12:18 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-11-10 12:18 Ben Woodcroft [this message]
2015-11-10 13:06 ` Update mafft to 7.245 Ricardo Wurmus
2015-11-10 13:12 ` Efraim Flashner
2015-11-10 22:22 ` Ben Woodcroft
2015-12-10 16:16 ` Ricardo Wurmus
2015-12-15 12:05 ` Ben Woodcroft
2015-12-17 12:47 ` Ricardo Wurmus
2015-12-17 20:01 ` Ben Woodcroft
2015-12-17 22:29 ` Ricardo Wurmus
2015-12-17 23:27 ` Ben Woodcroft
2015-12-21 14:17 ` Ricardo Wurmus
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