From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: Re: [PATCH] Add prodigal. Date: Sun, 05 Jul 2015 14:52:05 +1000 Message-ID: <5598B7F5.3080507@uq.edu.au> References: <558DDFB8.4070303@uq.edu.au> <558DE0A0.5020603@uq.edu.au> <87zj3lxwn2.fsf@mdc-berlin.de> <87y4j5xwiw.fsf@mdc-berlin.de> <558E981B.4000402@uq.edu.au> Mime-Version: 1.0 Content-Type: text/plain; charset=windows-1252; format=flowed Content-Transfer-Encoding: 7bit Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:58140) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZBbud-0002QX-Of for guix-devel@gnu.org; Sun, 05 Jul 2015 00:52:20 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZBbua-0007tL-IK for guix-devel@gnu.org; Sun, 05 Jul 2015 00:52:19 -0400 Received: from mailhub1.soe.uq.edu.au ([130.102.132.208]:45034 helo=newmailhub.uq.edu.au) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZBbua-0007t1-02 for guix-devel@gnu.org; Sun, 05 Jul 2015 00:52:16 -0400 In-Reply-To: <558E981B.4000402@uq.edu.au> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Ricardo Wurmus Cc: "guix-devel@gnu.org" On 27/06/15 22:33, Ben Woodcroft wrote: > To me this is problematic in two ways: > 1. It works on more than just genomes > 2. There is some contention in the field about the use of > "prokaryote", since this refers to a paraphyletic group - us humans > are more closely related to Archaea than Bacteria. > http://link.springer.com/referenceworkentry/10.1007/978-3-642-30194-0_114 > > I figure it was just easier to sidestep the issue and put Archaea and > Bacteria. Perhaps I bored everyone, but is the patch a-ok now? ta